Wall clock time and date at job start Wed Apr 1 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36402 * 120.34562 * 2 1 4 4 C 1.40197 * 119.26498 * 179.97438 * 3 2 1 5 5 C 1.35350 * 119.94671 * 0.02562 * 4 3 2 6 6 N 1.35765 * 120.70248 * 359.97438 * 5 4 3 7 7 C 1.46500 * 119.62207 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47624 * 89.99662 * 7 6 5 9 9 O 1.21286 * 119.99419 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00485 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00208 * 179.97438 * 10 8 7 12 12 C 1.51219 * 111.06818 * 291.66040 * 11 10 8 13 13 C 1.55691 * 104.60970 * 276.12474 * 12 11 10 14 14 C 1.55022 * 105.77317 * 352.87459 * 13 12 11 15 15 C 1.50525 * 102.34356 * 335.48279 * 14 13 12 16 16 H 1.08999 * 108.14093 * 293.46140 * 15 14 13 17 17 N 1.42708 * 128.14737 * 161.02576 * 15 14 13 18 18 C 1.36933 * 127.10231 * 28.96486 * 17 15 14 19 19 H 1.08004 * 120.00451 * 351.70338 * 18 17 15 20 20 C 1.38811 * 120.00113 * 171.70716 * 18 17 15 21 21 N 1.31627 * 119.99839 * 7.95041 * 20 18 17 22 22 Si 1.86800 * 120.00192 * 188.22283 * 20 18 17 23 23 H 1.48500 * 109.47120 * 264.92044 * 22 20 18 24 24 H 1.48497 * 109.47084 * 24.92490 * 22 20 18 25 25 H 1.48500 * 109.47039 * 144.92081 * 22 20 18 26 26 C 1.49295 * 105.79249 * 209.21889 * 17 15 14 27 27 C 1.52136 * 111.08516 * 71.70040 * 11 10 8 28 28 C 1.34650 * 120.75045 * 0.29189 * 6 5 4 29 29 O 1.22066 * 119.98845 * 179.70045 * 28 6 5 30 30 H 1.08999 * 109.47957 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47189 * 119.99799 * 1 2 3 32 32 H 1.09000 * 109.47564 * 240.00031 * 1 2 3 33 33 H 1.07996 * 120.36875 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.02711 * 179.97438 * 4 3 2 35 35 H 1.07995 * 119.64869 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47094 * 329.99242 * 7 6 5 37 37 H 1.09006 * 109.46971 * 209.99837 * 7 6 5 38 38 H 0.97002 * 119.99912 * 0.02562 * 10 8 7 39 39 H 1.09001 * 110.40758 * 34.90969 * 12 11 10 40 40 H 1.09001 * 110.40753 * 157.22507 * 12 11 10 41 41 H 1.09000 * 110.15668 * 111.86850 * 13 12 11 42 42 H 1.08997 * 110.15935 * 233.56477 * 13 12 11 43 43 H 1.09002 * 110.93642 * 217.05976 * 14 13 12 44 44 H 1.09008 * 110.45550 * 93.69036 * 14 13 12 45 45 H 0.97004 * 120.00028 * 180.27839 * 21 20 18 46 46 H 1.08995 * 110.04481 * 127.66602 * 26 17 15 47 47 H 1.08997 * 110.04802 * 249.13924 * 26 17 15 48 48 H 1.09002 * 111.14873 * 191.85134 * 27 11 10 49 49 H 1.08998 * 111.14889 * 316.07350 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5978 1.1507 0.0005 5 6 4.2512 -0.0346 0.0005 6 7 3.5635 -1.2052 0.0005 7 6 4.2949 -2.4746 0.0011 8 6 4.5452 -2.9097 1.4221 9 8 4.1510 -2.2267 2.3436 10 7 5.2061 -4.0580 1.6688 11 6 5.4499 -4.4805 3.0502 12 6 6.4322 -3.5575 3.7357 13 6 7.8326 -4.0925 3.3155 14 6 7.5668 -5.4151 2.5518 15 6 6.2349 -5.8447 3.1064 16 1 6.3697 -6.0925 4.1592 17 7 5.3043 -6.7705 2.5467 18 6 5.5871 -7.8414 1.7416 19 1 6.5875 -7.9799 1.3587 20 6 4.5882 -8.7492 1.4176 21 7 3.3394 -8.5004 1.7511 22 14 5.0171 -10.3273 0.5149 23 1 4.8200 -10.1323 -0.9440 24 1 6.4351 -10.6796 0.7801 25 1 4.1371 -11.4247 0.9909 26 6 3.9580 -6.3265 3.0150 27 6 4.1633 -4.9463 3.7153 28 6 2.2171 -1.2127 -0.0054 29 8 1.6129 -2.2734 -0.0108 30 1 -0.3635 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 -0.3634 -0.5138 0.8900 33 1 1.6678 2.1191 0.0004 34 1 4.1558 2.0754 0.0001 35 1 5.3311 -0.0494 0.0005 36 1 5.2476 -2.3453 -0.5125 37 1 3.7052 -3.2339 -0.5128 38 1 5.5210 -4.6043 0.9318 39 1 6.2968 -2.5331 3.3887 40 1 6.3121 -3.6105 4.8177 41 1 8.3282 -3.3748 2.6616 42 1 8.4436 -4.2798 4.1985 43 1 8.3376 -6.1537 2.7720 44 1 7.5014 -5.2294 1.4797 45 1 2.6419 -9.1366 1.5283 46 1 3.2834 -6.2197 2.1655 47 1 3.5533 -7.0470 3.7258 48 1 4.2963 -5.0621 4.7909 49 1 3.3385 -4.2690 3.4936 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990685894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:10 Heat of formation + Delta-G solvation = 8.761547 kcal Electronic energy + Delta-G solvation = -31852.975303 eV Core-core repulsion = 27781.819931 eV Total energy + Delta-G solvation = -4071.155372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.52332 -40.43543 -38.15879 -36.83690 -35.11958 -34.48876 -33.17025 -31.82151 -31.24899 -30.02402 -28.26486 -27.22058 -26.98054 -25.76763 -24.07972 -23.21815 -22.49377 -20.96573 -20.48568 -19.63491 -18.82007 -17.51132 -17.49743 -17.17248 -16.49724 -16.24283 -15.69330 -15.27152 -15.06860 -14.69038 -14.50569 -14.34655 -13.95374 -13.87736 -13.69114 -13.65534 -12.85742 -12.77305 -12.63584 -12.37463 -12.33202 -12.13136 -11.98136 -11.88541 -11.61488 -11.44841 -11.39099 -11.05547 -10.95262 -10.84585 -10.54838 -10.32943 -10.22009 -10.07410 -10.00825 -9.87598 -9.72319 -9.55317 -9.16794 -8.66331 -8.55176 -7.85852 -6.87942 -5.78946 -3.13116 0.78443 1.89305 2.46631 2.85267 3.36002 3.42299 3.43754 3.44625 3.76966 4.42259 4.44957 4.51853 4.57605 4.75503 4.90925 4.98893 5.06169 5.16745 5.18465 5.22323 5.28797 5.44166 5.51474 5.56442 5.67588 5.70557 5.77237 5.77967 5.90453 5.93044 6.00119 6.09963 6.13100 6.20399 6.25012 6.29388 6.32672 6.38772 6.45035 6.47042 6.62509 6.79858 6.85643 7.05007 7.11403 7.53951 7.55493 7.75762 7.89714 8.09647 8.16885 8.53595 9.09496 9.76685 10.46393 11.34032 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.003514 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.428800 B = 7966.669396 C = 9226.647058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.207 4.207 3 C -0.026 4.026 4 C -0.233 4.233 5 C 0.139 3.861 6 N -0.476 5.476 7 C 0.068 3.932 8 C 0.502 3.498 9 O -0.536 6.536 10 N -0.684 5.684 11 C 0.131 3.869 12 C -0.110 4.110 13 C -0.116 4.116 14 C -0.115 4.115 15 C 0.160 3.840 16 H 0.024 0.976 17 N -0.583 5.583 18 C -0.238 4.238 19 H 0.079 0.921 20 C 0.000 4.000 21 N -0.912 5.912 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.281 1.281 25 H -0.290 1.290 26 C 0.180 3.820 27 C -0.138 4.138 28 C 0.521 3.479 29 O -0.538 6.538 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.404 0.596 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.254 0.746 46 H 0.059 0.941 47 H 0.039 0.961 48 H 0.065 0.935 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 19.590 -3.561 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.211 4.211 3 C -0.048 4.048 4 C -0.257 4.257 5 C 0.012 3.988 6 N -0.186 5.186 7 C -0.058 4.058 8 C 0.286 3.714 9 O -0.414 6.414 10 N -0.335 5.335 11 C 0.044 3.956 12 C -0.149 4.149 13 C -0.154 4.154 14 C -0.153 4.153 15 C 0.049 3.951 16 H 0.041 0.959 17 N -0.307 5.307 18 C -0.366 4.366 19 H 0.097 0.903 20 C -0.198 4.198 21 N -0.558 5.558 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.206 1.206 25 H -0.216 1.216 26 C 0.056 3.944 27 C -0.178 4.178 28 C 0.322 3.678 29 O -0.419 6.419 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.240 0.760 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.057 0.943 48 H 0.084 0.916 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.313 19.087 -2.990 19.795 hybrid contribution 0.420 -1.133 -0.769 1.432 sum 4.733 17.954 -3.759 18.944 Atomic orbital electron populations 1.20399 0.89199 1.01762 1.02947 1.20782 0.97796 0.91972 1.10559 1.21287 0.93895 0.97818 0.91769 1.20527 0.94619 0.97057 1.13453 1.21848 0.98267 0.84869 0.93842 1.44997 1.08005 1.06445 1.59141 1.21851 0.99201 0.87325 0.97411 1.20422 0.78440 0.82015 0.90508 1.90701 1.50639 1.54564 1.45458 1.45622 1.56558 1.22140 1.09164 1.21571 0.96251 0.96563 0.81256 1.21857 0.93878 0.99032 1.00152 1.22601 0.96711 0.96509 0.99566 1.21629 0.97717 0.96228 0.99740 1.20822 0.90044 0.87775 0.96433 0.95895 1.43671 1.01026 1.28853 1.57127 1.18959 0.95559 0.99102 1.22977 0.90336 1.24841 0.95440 0.98620 1.00853 1.69951 0.99050 1.35862 1.50902 0.86194 0.77454 0.83583 0.79042 1.21683 1.20630 1.21631 1.21965 0.86741 0.88738 0.96960 1.22766 0.96585 0.99388 0.99015 1.16942 0.80464 0.91227 0.79211 1.91001 1.66326 1.32683 1.51875 0.91748 0.91380 0.91246 0.85124 0.83965 0.82527 0.86489 0.85209 0.76027 0.91431 0.91148 0.92325 0.91909 0.91720 0.91809 0.93559 0.92313 0.94265 0.91617 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.64 36.00 0.35 -0.65 16 2 C -0.21 -2.75 5.90 -104.42 -0.62 -3.36 16 3 C -0.03 -0.26 9.72 -39.51 -0.38 -0.64 16 4 C -0.23 -2.04 10.01 -39.88 -0.40 -2.44 16 5 C 0.14 1.36 10.28 -16.84 -0.17 1.19 16 6 N -0.48 -6.41 2.07 -121.06 -0.25 -6.66 16 7 C 0.07 0.88 5.82 -5.19 -0.03 0.85 16 8 C 0.50 8.27 7.21 -10.99 -0.08 8.19 16 9 O -0.54 -10.47 14.58 5.55 0.08 -10.38 16 10 N -0.68 -11.44 4.35 -46.58 -0.20 -11.64 16 11 C 0.13 2.35 0.41 -130.71 -0.05 2.29 16 12 C -0.11 -1.68 6.05 -26.19 -0.16 -1.84 16 13 C -0.12 -1.52 6.90 -24.23 -0.17 -1.69 16 14 C -0.11 -1.80 6.37 -26.90 -0.17 -1.97 16 15 C 0.16 3.11 2.65 -68.71 -0.18 2.93 16 16 H 0.02 0.49 7.99 -51.93 -0.41 0.07 16 17 N -0.58 -13.96 3.12 -162.74 -0.51 -14.47 16 18 C -0.24 -6.23 10.27 -15.06 -0.15 -6.38 16 19 H 0.08 1.97 7.84 -52.48 -0.41 1.56 16 20 C 0.00 0.00 5.49 -17.43 -0.10 -0.09 16 21 N -0.91 -26.44 10.64 55.49 0.59 -25.85 16 22 Si 0.91 21.51 29.56 -169.99 -5.03 16.49 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.18 4.38 5.28 -0.81 0.00 4.38 16 27 C -0.14 -2.84 6.22 -25.49 -0.16 -3.00 16 28 C 0.52 8.55 7.39 -15.45 -0.11 8.44 16 29 O -0.54 -11.09 16.08 4.86 0.08 -11.01 16 30 H 0.06 0.54 7.89 -51.93 -0.41 0.13 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.13 0.90 7.95 -52.49 -0.42 0.48 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.16 0.99 8.04 -52.49 -0.42 0.56 16 36 H 0.12 0.96 8.01 -51.93 -0.42 0.55 16 37 H 0.13 1.87 7.38 -51.93 -0.38 1.48 16 38 H 0.40 6.62 7.76 -40.82 -0.32 6.31 16 39 H 0.07 1.05 6.84 -51.93 -0.36 0.70 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.97 7.31 -51.92 -0.38 0.59 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.06 1.62 7.35 -51.93 -0.38 1.23 16 47 H 0.04 1.05 7.81 -51.93 -0.41 0.65 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.07 1.48 7.17 -51.93 -0.37 1.10 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -34.91 390.05 -9.56 -44.47 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.60 Total: 6.98 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -2.60 Total: 6.19 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.37 Total: -58.62 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.16 Total: -21.39 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.91 -9.56 -44.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990685894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.230 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds