Wall clock time and date at job start Wed Apr 1 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36399 * 120.34716 * 2 1 4 4 C 1.40199 * 119.26328 * 179.97438 * 3 2 1 5 5 C 1.35344 * 119.94569 * 0.25813 * 4 3 2 6 6 N 1.35763 * 120.70455 * 359.50645 * 5 4 3 7 7 C 1.46498 * 119.62445 * 180.23587 * 6 5 4 8 8 C 1.50693 * 109.47562 * 270.23396 * 7 6 5 9 9 O 1.21277 * 120.00210 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00304 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00099 * 179.97438 * 10 8 7 12 12 H 1.09001 * 115.55089 * 9.29697 * 11 10 8 13 13 C 1.53026 * 117.50507 * 223.61094 * 11 10 8 14 14 C 1.52813 * 117.50171 * 155.02664 * 11 10 8 15 15 C 1.53186 * 117.71297 * 359.85753 * 14 11 10 16 16 C 1.53354 * 108.77073 * 158.89071 * 15 14 11 17 17 N 1.46842 * 108.81662 * 51.30541 * 16 15 14 18 18 C 1.36937 * 120.37973 * 123.07576 * 17 16 15 19 19 H 1.08004 * 119.99765 * 207.87267 * 18 17 16 20 20 C 1.38807 * 120.00343 * 27.87776 * 18 17 16 21 21 N 1.31618 * 120.00451 * 214.75832 * 20 18 17 22 22 Si 1.86800 * 119.99871 * 34.75284 * 20 18 17 23 23 H 1.48506 * 109.47304 * 95.38545 * 22 20 18 24 24 H 1.48499 * 109.47625 * 215.38547 * 22 20 18 25 25 H 1.48501 * 109.47098 * 335.38665 * 22 20 18 26 26 C 1.46845 * 119.23629 * 303.10384 * 17 16 15 27 27 C 1.53182 * 117.71495 * 215.10182 * 14 11 10 28 28 C 1.34657 * 120.75215 * 0.47655 * 6 5 4 29 29 O 1.22055 * 119.98966 * 179.76809 * 28 6 5 30 30 H 1.09005 * 109.47108 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47286 * 119.99610 * 1 2 3 32 32 H 1.08999 * 109.47437 * 239.99905 * 1 2 3 33 33 H 1.07998 * 120.36653 * 359.95972 * 3 2 1 34 34 H 1.07997 * 120.02445 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.64603 * 179.72130 * 5 4 3 36 36 H 1.09003 * 109.47032 * 30.23551 * 7 6 5 37 37 H 1.08999 * 109.47385 * 150.22846 * 7 6 5 38 38 H 0.96999 * 119.99765 * 0.02562 * 10 8 7 39 39 H 1.09005 * 117.50156 * 359.97438 * 13 11 10 40 40 H 1.08993 * 117.50895 * 145.04904 * 13 11 10 41 41 H 1.08995 * 109.59171 * 278.67659 * 15 14 11 42 42 H 1.08998 * 109.58797 * 39.10601 * 15 14 11 43 43 H 1.09001 * 109.58082 * 291.51311 * 16 15 14 44 44 H 1.08992 * 109.69233 * 171.17496 * 16 15 14 45 45 H 0.96996 * 120.00143 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58087 * 297.10706 * 26 17 16 47 47 H 1.08998 * 109.58010 * 176.69872 * 26 17 16 48 48 H 1.08998 * 109.58896 * 320.89551 * 27 14 11 49 49 H 1.09005 * 109.58867 * 81.18623 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1506 0.0005 5 6 4.2512 -0.0347 -0.0042 6 7 3.5635 -1.2053 0.0005 7 6 4.2948 -2.4748 0.0004 8 6 4.5456 -2.9100 -1.4203 9 8 4.1519 -2.2274 -2.3422 10 7 5.2075 -4.0580 -1.6666 11 6 5.4508 -4.4814 -3.0478 12 1 5.2092 -3.7453 -3.8147 13 6 5.2202 -5.9559 -3.3861 14 6 6.6426 -5.4028 -3.3039 15 6 7.4970 -5.8136 -2.1006 16 6 8.2624 -7.0948 -2.4531 17 7 8.9569 -6.8950 -3.7314 18 6 10.3138 -7.0591 -3.8153 19 1 10.8790 -6.5128 -4.5559 20 6 10.9629 -7.9276 -2.9486 21 7 12.1742 -7.6449 -2.5183 22 14 10.1171 -9.4977 -2.3927 23 1 10.5432 -10.6240 -3.2617 24 1 10.4906 -9.7897 -0.9854 25 1 8.6450 -9.3277 -2.4890 26 6 8.1797 -6.5167 -4.9185 27 6 7.4127 -5.2236 -4.6159 28 6 2.2170 -1.2128 0.0004 29 8 1.6128 -2.2734 0.0004 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 -0.3634 -0.5138 0.8899 33 1 1.6679 2.1190 -0.0007 34 1 4.1559 2.0752 0.0001 35 1 5.3311 -0.0495 -0.0083 36 1 5.2473 -2.3454 0.5143 37 1 3.7050 -3.2339 0.5143 38 1 5.5221 -4.6042 -0.9294 39 1 4.8878 -6.6110 -2.5808 40 1 4.8275 -6.1899 -4.3755 41 1 8.2043 -5.0182 -1.8660 42 1 6.8527 -5.9977 -1.2408 43 1 7.5623 -7.9253 -2.5439 44 1 8.9903 -7.3144 -1.6723 45 1 12.6275 -8.2517 -1.9124 46 1 7.4744 -7.3112 -5.1618 47 1 8.8536 -6.3534 -5.7595 48 1 6.7127 -5.0162 -5.4251 49 1 8.1139 -4.3948 -4.5178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016622611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:38 Heat of formation + Delta-G solvation = 21.316780 kcal Electronic energy + Delta-G solvation = -30111.088504 eV Core-core repulsion = 26040.477568 eV Total energy + Delta-G solvation = -4070.610937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.81403 -40.01775 -38.59802 -37.13959 -35.83385 -35.35576 -33.37784 -31.84025 -31.46911 -30.53480 -29.13207 -28.30325 -27.46074 -24.24191 -23.77393 -22.99026 -22.75785 -22.08906 -21.17035 -20.52117 -18.53865 -17.82958 -17.79654 -17.64060 -16.78005 -16.43929 -15.93407 -15.58830 -15.31596 -15.05196 -14.78109 -14.28402 -14.15594 -14.05578 -14.00495 -13.66121 -13.17396 -13.12297 -12.98886 -12.81942 -12.61023 -12.50136 -12.43249 -12.20306 -12.10618 -11.91325 -11.84534 -11.75447 -11.31715 -10.74263 -10.68334 -10.62111 -10.28115 -10.19894 -10.05472 -9.96978 -9.90625 -9.55460 -9.40809 -8.73995 -8.41297 -8.13577 -6.98865 -6.06946 -3.28162 0.52582 1.63367 2.12007 2.28269 2.89779 3.35552 3.41522 3.48154 3.53135 3.97684 4.19559 4.25542 4.36317 4.51402 4.53309 4.68780 4.78231 4.81805 4.85329 4.88931 4.93960 4.95160 5.06202 5.27827 5.30133 5.40199 5.47132 5.51271 5.67887 5.77682 5.84496 5.89334 5.90251 5.91953 6.04251 6.05131 6.16730 6.21127 6.31049 6.33668 6.38516 6.44969 6.62706 6.69761 6.73755 6.75008 6.96866 7.24573 7.76441 7.94080 7.94157 8.28256 8.93859 9.70401 10.11462 11.08011 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.002132 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.308136 B =13131.718656 C =13281.881483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.210 4.210 3 C -0.022 4.022 4 C -0.227 4.227 5 C 0.136 3.864 6 N -0.479 5.479 7 C 0.070 3.930 8 C 0.505 3.495 9 O -0.529 6.529 10 N -0.690 5.690 11 C 0.073 3.927 12 H 0.133 0.867 13 C -0.183 4.183 14 C -0.099 4.099 15 C -0.101 4.101 16 C 0.150 3.850 17 N -0.599 5.599 18 C -0.271 4.271 19 H 0.080 0.920 20 C 0.036 3.964 21 N -0.886 5.886 22 Si 0.837 3.163 23 H -0.293 1.293 24 H -0.295 1.295 25 H -0.254 1.254 26 C 0.150 3.850 27 C -0.098 4.098 28 C 0.523 3.477 29 O -0.547 6.547 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.403 0.597 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.029 0.971 44 H 0.066 0.934 45 H 0.262 0.738 46 H 0.023 0.977 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.269 16.531 7.567 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.214 4.214 3 C -0.044 4.044 4 C -0.250 4.250 5 C 0.009 3.991 6 N -0.189 5.189 7 C -0.056 4.056 8 C 0.289 3.711 9 O -0.405 6.405 10 N -0.341 5.341 11 C -0.032 4.032 12 H 0.150 0.850 13 C -0.221 4.221 14 C -0.100 4.100 15 C -0.141 4.141 16 C 0.023 3.977 17 N -0.322 5.322 18 C -0.398 4.398 19 H 0.098 0.902 20 C -0.165 4.165 21 N -0.526 5.526 22 Si 0.664 3.336 23 H -0.221 1.221 24 H -0.222 1.222 25 H -0.179 1.179 26 C 0.024 3.976 27 C -0.137 4.137 28 C 0.325 3.675 29 O -0.429 6.429 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.239 0.761 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.041 0.959 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.762 16.275 7.000 25.805 hybrid contribution 0.027 -1.299 0.669 1.461 sum -18.736 14.976 7.669 25.182 Atomic orbital electron populations 1.20402 0.89062 1.01980 1.02841 1.20780 0.97865 0.91909 1.10813 1.21355 0.93925 0.97988 0.91104 1.20609 0.94641 0.97241 1.12526 1.21919 0.98494 0.84722 0.93939 1.44982 1.07969 1.06397 1.59556 1.21800 0.99731 0.87690 0.96343 1.20601 0.77996 0.81422 0.91086 1.90743 1.50176 1.53871 1.45668 1.45288 1.57016 1.23314 1.08442 1.21865 1.04087 0.93210 0.84050 0.84959 1.23566 0.99763 0.95685 1.03113 1.21946 0.88824 1.00575 0.98658 1.21706 0.97583 1.01119 0.93642 1.21290 0.94472 0.92966 0.88927 1.44255 1.04479 1.80589 1.02867 1.18793 0.80554 1.20748 1.19732 0.90247 1.25251 0.95029 0.98554 0.97625 1.70078 1.15282 1.35738 1.31519 0.87589 0.81681 0.87343 0.76942 1.22126 1.22226 1.17901 1.20903 0.93655 0.92757 0.90296 1.21669 0.98263 1.00701 0.93079 1.16930 0.80345 0.91236 0.78978 1.90943 1.66455 1.32796 1.52722 0.91575 0.91307 0.91380 0.84859 0.83627 0.82153 0.85757 0.85147 0.76092 0.88812 0.88236 0.91109 0.93427 0.95362 0.91602 0.92829 0.95933 0.91788 0.92532 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.64 36.01 0.35 -0.42 16 2 C -0.21 -2.21 5.90 -104.42 -0.62 -2.83 16 3 C -0.02 -0.17 9.72 -39.51 -0.38 -0.55 16 4 C -0.23 -1.53 10.01 -39.88 -0.40 -1.93 16 5 C 0.14 1.03 10.28 -16.84 -0.17 0.85 16 6 N -0.48 -4.95 2.07 -121.07 -0.25 -5.20 16 7 C 0.07 0.61 5.81 -5.20 -0.03 0.58 16 8 C 0.50 6.21 7.89 -10.99 -0.09 6.13 16 9 O -0.53 -8.71 16.00 5.56 0.09 -8.62 16 10 N -0.69 -7.88 5.34 -53.89 -0.29 -8.16 16 11 C 0.07 0.98 6.14 -68.01 -0.42 0.56 16 12 H 0.13 1.93 7.40 -51.93 -0.38 1.55 16 13 C -0.18 -2.40 9.86 -26.80 -0.26 -2.66 16 14 C -0.10 -1.45 1.94 -154.50 -0.30 -1.75 16 15 C -0.10 -1.61 5.37 -26.45 -0.14 -1.76 16 16 C 0.15 3.05 4.36 -3.67 -0.02 3.03 16 17 N -0.60 -13.57 2.66 -172.26 -0.46 -14.03 16 18 C -0.27 -7.30 9.83 -15.06 -0.15 -7.44 16 19 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 20 C 0.04 1.01 4.86 -17.43 -0.08 0.93 16 21 N -0.89 -26.24 13.97 55.49 0.78 -25.46 16 22 Si 0.84 20.69 26.39 -169.99 -4.49 16.20 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.25 -5.91 4.84 56.52 0.27 -5.64 16 26 C 0.15 2.83 6.52 -3.67 -0.02 2.81 16 27 C -0.10 -1.54 5.83 -26.45 -0.15 -1.70 16 28 C 0.52 6.84 7.39 -15.45 -0.11 6.73 16 29 O -0.55 -8.95 16.09 4.87 0.08 -8.87 16 30 H 0.07 0.40 7.89 -51.93 -0.41 0.00 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.13 0.64 7.95 -52.49 -0.42 0.22 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 35 H 0.16 0.71 8.04 -52.49 -0.42 0.29 16 36 H 0.12 0.57 8.02 -51.93 -0.42 0.15 16 37 H 0.13 1.12 7.39 -51.93 -0.38 0.73 16 38 H 0.40 3.68 7.12 -40.82 -0.29 3.39 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.62 6.75 -51.93 -0.35 0.27 16 43 H 0.03 0.58 6.77 -51.93 -0.35 0.23 16 44 H 0.07 1.47 5.45 -51.93 -0.28 1.19 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 48 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 49 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -36.33 393.16 -9.23 -45.57 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.61 Total: 2.07 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.01 Total: 0.58 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.22 Total: -52.86 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.17 Total: -17.49 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.49 Total: 16.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.33 -9.23 -45.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016622611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.884 kcal (2) G-P(sol) polarization free energy of solvation -36.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds