Wall clock time and date at job start Wed Apr 1 2020 04:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35654 * 116.99793 * 2 1 4 4 C 1.39343 * 120.54171 * 359.72769 * 3 2 1 5 5 C 1.38306 * 118.43507 * 179.73370 * 4 3 2 6 6 C 1.50706 * 120.27305 * 180.25918 * 5 4 3 7 7 C 1.38763 * 119.44678 * 0.55816 * 5 4 3 8 8 N 1.31371 * 121.06822 * 359.70149 * 7 5 4 9 9 C 1.32866 * 121.69608 * 359.97438 * 8 7 5 10 10 C 1.47827 * 119.78280 * 180.02562 * 9 8 7 11 11 O 1.21558 * 120.00037 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00205 * 0.02562 * 10 9 8 13 13 C 1.46491 * 119.99952 * 179.97438 * 12 10 9 14 14 H 1.09001 * 115.55464 * 350.68760 * 13 12 10 15 15 C 1.53030 * 117.50150 * 136.41719 * 13 12 10 16 16 C 1.52818 * 117.50279 * 205.00287 * 13 12 10 17 17 C 1.53181 * 117.71660 * 144.90086 * 16 13 12 18 18 C 1.53354 * 108.77241 * 158.88605 * 17 16 13 19 19 N 1.46841 * 108.81284 * 51.30573 * 18 17 16 20 20 C 1.36939 * 120.38281 * 123.12238 * 19 18 17 21 21 H 1.07998 * 119.99974 * 208.88762 * 20 19 18 22 22 C 1.38809 * 119.99871 * 28.88165 * 20 19 18 23 23 N 1.31627 * 120.00158 * 17.86286 * 22 20 19 24 24 Si 1.86805 * 120.00150 * 197.86326 * 22 20 19 25 25 H 1.48503 * 109.47085 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46950 * 119.99771 * 24 22 20 27 27 H 1.48500 * 109.47178 * 240.00014 * 24 22 20 28 28 C 1.46850 * 119.23602 * 303.10358 * 19 18 17 29 29 C 1.53181 * 117.71327 * 0.13680 * 16 13 12 30 30 H 1.09004 * 109.46582 * 300.00030 * 1 2 3 31 31 H 1.08997 * 109.47043 * 59.99944 * 1 2 3 32 32 H 1.08996 * 109.47127 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.78191 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.46781 * 270.30099 * 6 5 4 35 35 H 1.08997 * 109.47091 * 30.30166 * 6 5 4 36 36 H 1.08995 * 109.46477 * 150.30340 * 6 5 4 37 37 H 1.07998 * 119.46473 * 179.67909 * 7 5 4 38 38 H 0.96997 * 119.99788 * 359.97438 * 12 10 9 39 39 H 1.08999 * 117.50581 * 214.95400 * 15 13 12 40 40 H 1.09003 * 117.50778 * 0.02562 * 15 13 12 41 41 H 1.08994 * 109.58723 * 278.67348 * 17 16 13 42 42 H 1.09004 * 109.58545 * 39.10252 * 17 16 13 43 43 H 1.09001 * 109.58203 * 291.51013 * 18 17 16 44 44 H 1.08994 * 109.58109 * 171.10724 * 18 17 16 45 45 H 0.96992 * 120.00016 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.57814 * 297.10542 * 28 19 18 47 47 H 1.09000 * 109.58127 * 176.70285 * 28 19 18 48 48 H 1.09005 * 109.59168 * 320.91000 * 29 16 13 49 49 H 1.09003 * 109.58375 * 81.33311 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2970 2.3844 -0.0057 5 6 1.9697 3.5928 0.0002 6 6 1.2020 4.8897 0.0003 7 6 3.3573 3.6012 -0.0003 8 7 4.0420 2.4800 -0.0003 9 6 3.4410 1.2950 0.0005 10 6 4.2532 0.0598 0.0010 11 8 3.7075 -1.0264 0.0013 12 7 5.5987 0.1380 0.0010 13 6 6.4035 -1.0861 0.0021 14 1 5.8509 -2.0120 0.1619 15 6 7.6134 -1.1371 -0.9336 16 6 7.8176 -1.0005 0.5750 17 6 8.3541 -2.2186 1.3332 18 6 9.8860 -2.1524 1.3526 19 7 10.2968 -0.8280 1.8356 20 6 11.1131 -0.7119 2.9289 21 1 11.0518 0.1636 3.5582 22 6 12.0195 -1.7197 3.2283 23 7 12.3527 -2.6000 2.3082 24 14 12.7663 -1.8269 4.9373 25 1 12.2313 -0.7282 5.7810 26 1 12.4177 -3.1345 5.5487 27 1 14.2430 -1.7034 4.8408 28 6 9.8223 0.3708 1.1324 29 6 8.2891 0.3558 1.1087 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2175 2.3528 -0.0106 34 1 1.0166 5.2022 -1.0274 35 1 0.2513 4.7491 0.5144 36 1 1.7830 5.6557 0.5138 37 1 3.8829 4.5446 -0.0009 38 1 6.0342 1.0047 0.0004 39 1 7.8569 -2.0967 -1.3896 40 1 7.8108 -0.2598 -1.5495 41 1 7.9749 -2.2090 2.3551 42 1 8.0341 -3.1316 0.8310 43 1 10.2712 -2.3094 0.3451 44 1 10.2765 -2.9215 2.0190 45 1 12.9857 -3.3044 2.5176 46 1 10.2034 0.3701 0.1113 47 1 10.1709 1.2622 1.6539 48 1 7.9258 1.1510 0.4577 49 1 7.9065 0.5040 2.1186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016663282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:18 Heat of formation + Delta-G solvation = 11.046111 kcal Electronic energy + Delta-G solvation = -30098.749454 eV Core-core repulsion = 26027.693148 eV Total energy + Delta-G solvation = -4071.056306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.26325 -39.54983 -38.58637 -38.10185 -35.37886 -34.22769 -32.82617 -31.49495 -31.31527 -29.92530 -28.61974 -28.18427 -27.48429 -24.28774 -24.07814 -23.10784 -22.37236 -21.89278 -20.94333 -20.23097 -18.47838 -18.06610 -17.79376 -17.50161 -16.40136 -16.32183 -15.83989 -15.42222 -14.89134 -14.74229 -14.47459 -14.24492 -14.15163 -13.95875 -13.91781 -13.43166 -13.27828 -13.13763 -13.09757 -12.97427 -12.63923 -12.55889 -12.14110 -11.83656 -11.83056 -11.54568 -11.50429 -11.23292 -10.89250 -10.68958 -10.37852 -10.31459 -10.23235 -9.94472 -9.89325 -9.82724 -9.58444 -9.53416 -9.24667 -8.78585 -8.39630 -8.27656 -6.57536 -5.73327 -3.16118 0.33301 0.85966 2.64657 2.78552 3.11056 3.40717 3.48760 3.51152 3.58818 3.94856 4.11753 4.31202 4.33114 4.48583 4.53573 4.54734 4.65937 4.74213 5.00015 5.03088 5.06028 5.10815 5.15108 5.24893 5.27407 5.42776 5.44947 5.47286 5.60818 5.66980 5.72416 5.96676 5.99988 6.16641 6.18145 6.22502 6.38888 6.54835 6.69243 6.72897 6.74502 6.78932 6.82938 6.93169 7.05785 7.37382 7.44220 7.73086 7.74001 7.85479 8.33584 8.52420 9.27725 9.91601 10.48444 11.34347 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002241 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.558612 B =12488.653282 C =13119.216822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.143 3.857 4 C -0.180 4.180 5 C -0.074 4.074 6 C -0.115 4.115 7 C 0.059 3.941 8 N -0.415 5.415 9 C 0.039 3.961 10 C 0.573 3.427 11 O -0.520 6.520 12 N -0.678 5.678 13 C 0.068 3.932 14 H 0.132 0.868 15 C -0.182 4.182 16 C -0.096 4.096 17 C -0.105 4.105 18 C 0.173 3.827 19 N -0.590 5.590 20 C -0.250 4.250 21 H 0.064 0.936 22 C 0.001 3.999 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.150 3.850 29 C -0.097 4.097 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.165 0.835 38 H 0.409 0.591 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.018 0.982 44 H 0.090 0.910 45 H 0.253 0.747 46 H 0.019 0.981 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.817 12.646 -7.450 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.180 6.180 3 C 0.092 3.908 4 C -0.206 4.206 5 C -0.077 4.077 6 C -0.172 4.172 7 C -0.103 4.103 8 N -0.126 5.126 9 C -0.100 4.100 10 C 0.358 3.642 11 O -0.395 6.395 12 N -0.328 5.328 13 C -0.037 4.037 14 H 0.150 0.850 15 C -0.220 4.220 16 C -0.097 4.097 17 C -0.145 4.145 18 C 0.047 3.953 19 N -0.312 5.312 20 C -0.380 4.380 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.024 3.976 29 C -0.137 4.137 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.163 0.837 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.183 0.817 38 H 0.246 0.754 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.092 11.483 -7.425 28.576 hybrid contribution -0.595 0.525 0.750 1.092 sum -25.687 12.008 -6.675 29.130 Atomic orbital electron populations 1.23229 0.78533 1.04774 1.01144 1.86445 1.20907 1.24439 1.86257 1.20032 0.92231 0.85692 0.92883 1.21615 1.00914 0.91233 1.06888 1.21010 0.95265 0.95789 0.95595 1.20824 0.99926 0.93343 1.03134 1.22623 0.90572 0.96445 1.00630 1.67619 1.39752 0.97372 1.07850 1.20679 0.88586 0.92838 1.07859 1.17538 0.82168 0.87207 0.77302 1.90817 1.71687 1.27544 1.49464 1.45205 1.05095 1.09644 1.72846 1.21922 0.86922 0.89018 1.05842 0.85009 1.23532 1.01442 1.03221 0.93823 1.21955 0.94782 0.98637 0.94333 1.21878 1.00732 0.93209 0.98649 1.20764 0.87466 0.88939 0.98111 1.43990 1.55118 0.99916 1.32187 1.19228 1.12140 1.05716 1.00913 0.91795 1.25044 0.96936 0.99926 0.97822 1.70048 1.34870 1.18394 1.31274 0.86263 0.78560 0.77586 0.84615 1.20284 1.21585 1.21798 1.20841 0.90352 0.91057 0.95387 1.21623 0.99535 0.92679 0.99841 0.92488 0.92538 0.87539 0.83669 0.90185 0.91006 0.90398 0.81745 0.75374 0.88322 0.89032 0.92142 0.93016 0.96359 0.89208 0.93736 0.96306 0.92773 0.93406 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.12 16 2 O -0.27 -3.34 8.56 -40.61 -0.35 -3.69 16 3 C 0.14 1.69 6.71 -38.56 -0.26 1.43 16 4 C -0.18 -1.48 8.81 -39.15 -0.34 -1.82 16 5 C -0.07 -0.54 5.90 -104.40 -0.62 -1.15 16 6 C -0.12 -0.43 10.03 36.01 0.36 -0.07 16 7 C 0.06 0.52 10.85 -17.55 -0.19 0.33 16 8 N -0.42 -5.00 9.54 -9.71 -0.09 -5.09 16 9 C 0.04 0.54 6.76 -82.88 -0.56 -0.02 16 10 C 0.57 9.29 7.80 -12.34 -0.10 9.20 16 11 O -0.52 -9.80 14.70 -16.64 -0.24 -10.04 16 12 N -0.68 -10.37 5.33 -54.83 -0.29 -10.66 16 13 C 0.07 1.11 6.14 -68.01 -0.42 0.69 16 14 H 0.13 2.26 7.40 -51.93 -0.38 1.88 16 15 C -0.18 -2.85 9.86 -26.79 -0.26 -3.11 16 16 C -0.10 -1.69 1.94 -154.49 -0.30 -1.99 16 17 C -0.11 -2.09 5.83 -26.45 -0.15 -2.25 16 18 C 0.17 4.19 5.40 -3.67 -0.02 4.17 16 19 N -0.59 -14.96 2.94 -172.26 -0.51 -15.46 16 20 C -0.25 -6.94 9.54 -15.06 -0.14 -7.09 16 21 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 22 C 0.00 0.03 4.88 -17.43 -0.09 -0.05 16 23 N -0.90 -26.42 11.23 55.49 0.62 -25.80 16 24 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.15 3.19 6.52 -3.67 -0.02 3.17 16 29 C -0.10 -1.74 5.37 -26.46 -0.14 -1.88 16 30 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 31 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.15 0.75 6.46 -52.49 -0.34 0.42 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 36 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 37 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.41 5.80 6.44 -40.82 -0.26 5.53 16 39 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 2.43 5.93 -51.93 -0.31 2.12 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 1.13 7.92 -51.93 -0.41 0.71 16 48 H 0.05 0.73 6.75 -51.93 -0.35 0.38 16 49 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -34.00 395.36 -9.66 -43.66 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.47 Total: 3.54 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.26 Total: 0.67 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.27 Total: -57.02 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.59 Total: -13.73 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.00 -9.66 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016663282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.707 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds