Wall clock time and date at job start Wed Apr 1 2020 04:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35654 * 116.99793 * 2 1 4 4 C 1.39343 * 120.54171 * 359.72769 * 3 2 1 5 5 C 1.38306 * 118.43507 * 179.73370 * 4 3 2 6 6 C 1.50706 * 120.27305 * 180.25918 * 5 4 3 7 7 C 1.38763 * 119.44678 * 0.55816 * 5 4 3 8 8 N 1.31371 * 121.06822 * 359.70149 * 7 5 4 9 9 C 1.32866 * 121.69608 * 359.97438 * 8 7 5 10 10 C 1.47827 * 119.78280 * 180.02562 * 9 8 7 11 11 O 1.21558 * 120.00037 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00205 * 0.02562 * 10 9 8 13 13 C 1.46491 * 119.99952 * 179.97438 * 12 10 9 14 14 H 1.09001 * 115.55464 * 350.68760 * 13 12 10 15 15 C 1.53030 * 117.50150 * 136.41719 * 13 12 10 16 16 C 1.52818 * 117.50279 * 205.00287 * 13 12 10 17 17 C 1.53181 * 117.71660 * 144.90086 * 16 13 12 18 18 C 1.53354 * 108.77241 * 158.88605 * 17 16 13 19 19 N 1.46841 * 108.81284 * 51.30573 * 18 17 16 20 20 C 1.36939 * 120.38281 * 123.12238 * 19 18 17 21 21 H 1.07998 * 119.99974 * 208.88762 * 20 19 18 22 22 C 1.38809 * 119.99871 * 28.88165 * 20 19 18 23 23 N 1.31627 * 120.00158 * 17.86286 * 22 20 19 24 24 Si 1.86805 * 120.00150 * 197.86326 * 22 20 19 25 25 H 1.48503 * 109.47085 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46950 * 119.99771 * 24 22 20 27 27 H 1.48500 * 109.47178 * 240.00014 * 24 22 20 28 28 C 1.46850 * 119.23602 * 303.10358 * 19 18 17 29 29 C 1.53181 * 117.71327 * 0.13680 * 16 13 12 30 30 H 1.09004 * 109.46582 * 300.00030 * 1 2 3 31 31 H 1.08997 * 109.47043 * 59.99944 * 1 2 3 32 32 H 1.08996 * 109.47127 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.78191 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.46781 * 270.30099 * 6 5 4 35 35 H 1.08997 * 109.47091 * 30.30166 * 6 5 4 36 36 H 1.08995 * 109.46477 * 150.30340 * 6 5 4 37 37 H 1.07998 * 119.46473 * 179.67909 * 7 5 4 38 38 H 0.96997 * 119.99788 * 359.97438 * 12 10 9 39 39 H 1.08999 * 117.50581 * 214.95400 * 15 13 12 40 40 H 1.09003 * 117.50778 * 0.02562 * 15 13 12 41 41 H 1.08994 * 109.58723 * 278.67348 * 17 16 13 42 42 H 1.09004 * 109.58545 * 39.10252 * 17 16 13 43 43 H 1.09001 * 109.58203 * 291.51013 * 18 17 16 44 44 H 1.08994 * 109.58109 * 171.10724 * 18 17 16 45 45 H 0.96992 * 120.00016 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.57814 * 297.10542 * 28 19 18 47 47 H 1.09000 * 109.58127 * 176.70285 * 28 19 18 48 48 H 1.09005 * 109.59168 * 320.91000 * 29 16 13 49 49 H 1.09003 * 109.58375 * 81.33311 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2970 2.3844 -0.0057 5 6 1.9697 3.5928 0.0002 6 6 1.2020 4.8897 0.0003 7 6 3.3573 3.6012 -0.0003 8 7 4.0420 2.4800 -0.0003 9 6 3.4410 1.2950 0.0005 10 6 4.2532 0.0598 0.0010 11 8 3.7075 -1.0264 0.0013 12 7 5.5987 0.1380 0.0010 13 6 6.4035 -1.0861 0.0021 14 1 5.8509 -2.0120 0.1619 15 6 7.6134 -1.1371 -0.9336 16 6 7.8176 -1.0005 0.5750 17 6 8.3541 -2.2186 1.3332 18 6 9.8860 -2.1524 1.3526 19 7 10.2968 -0.8280 1.8356 20 6 11.1131 -0.7119 2.9289 21 1 11.0518 0.1636 3.5582 22 6 12.0195 -1.7197 3.2283 23 7 12.3527 -2.6000 2.3082 24 14 12.7663 -1.8269 4.9373 25 1 12.2313 -0.7282 5.7810 26 1 12.4177 -3.1345 5.5487 27 1 14.2430 -1.7034 4.8408 28 6 9.8223 0.3708 1.1324 29 6 8.2891 0.3558 1.1087 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2175 2.3528 -0.0106 34 1 1.0166 5.2022 -1.0274 35 1 0.2513 4.7491 0.5144 36 1 1.7830 5.6557 0.5138 37 1 3.8829 4.5446 -0.0009 38 1 6.0342 1.0047 0.0004 39 1 7.8569 -2.0967 -1.3896 40 1 7.8108 -0.2598 -1.5495 41 1 7.9749 -2.2090 2.3551 42 1 8.0341 -3.1316 0.8310 43 1 10.2712 -2.3094 0.3451 44 1 10.2765 -2.9215 2.0190 45 1 12.9857 -3.3044 2.5176 46 1 10.2034 0.3701 0.1113 47 1 10.1709 1.2622 1.6539 48 1 7.9258 1.1510 0.4577 49 1 7.9065 0.5040 2.1186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016663282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:17 Heat of formation + Delta-G solvation = -10.027018 kcal Electronic energy + Delta-G solvation = -30099.663253 eV Core-core repulsion = 26027.693148 eV Total energy + Delta-G solvation = -4071.970106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.05847 -40.81961 -39.48859 -39.29307 -37.10994 -34.97312 -34.25596 -33.24544 -32.03977 -31.64763 -30.01909 -29.02830 -28.14381 -26.23521 -24.86729 -24.07147 -23.86636 -23.05493 -22.43817 -21.53412 -19.83826 -19.35977 -18.55755 -18.42176 -18.08480 -17.12315 -17.04242 -16.79098 -16.30671 -15.88318 -15.67767 -15.38101 -15.13837 -15.05891 -14.86014 -14.85541 -14.71162 -14.52636 -14.15639 -13.78462 -13.60736 -13.55557 -13.28377 -13.10304 -13.00203 -12.88759 -12.60281 -12.52472 -12.42069 -12.40170 -12.24345 -11.99303 -11.78953 -11.38757 -11.35162 -11.23117 -10.83047 -10.61912 -10.53952 -10.47308 -9.74979 -9.42609 -8.61565 -7.85246 -5.31401 -0.43193 0.18681 1.45685 1.48003 1.58415 1.64773 1.97594 2.17148 2.52124 2.70407 2.98400 3.13799 3.29411 3.51663 3.63321 3.67619 3.79842 3.87273 3.89365 3.98894 4.04350 4.13126 4.22256 4.25586 4.33151 4.52547 4.57614 4.62424 4.72027 4.72982 4.80414 4.84760 4.85962 4.90814 4.95514 5.02521 5.08158 5.14731 5.17414 5.18663 5.31241 5.37473 5.46178 5.49768 5.55942 5.66686 5.77891 6.17696 6.41485 6.42299 6.76987 7.17183 7.17405 7.89302 8.40856 9.20076 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002241 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.558612 B =12488.653282 C =13119.216822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.308 6.308 3 C 0.132 3.868 4 C -0.177 4.177 5 C -0.057 4.057 6 C -0.114 4.114 7 C 0.053 3.947 8 N -0.434 5.434 9 C -0.005 4.005 10 C 0.569 3.431 11 O -0.558 6.558 12 N -0.674 5.674 13 C 0.081 3.919 14 H 0.121 0.879 15 C -0.166 4.166 16 C -0.112 4.112 17 C -0.093 4.093 18 C 0.182 3.818 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.064 0.936 22 C -0.051 4.051 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.268 1.268 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.147 3.853 29 C -0.082 4.082 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.178 0.822 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.194 0.806 38 H 0.415 0.585 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.001 0.999 44 H 0.055 0.945 45 H 0.250 0.750 46 H 0.019 0.981 47 H 0.055 0.945 48 H 0.079 0.921 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.409 15.613 -7.776 33.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.218 6.218 3 C 0.081 3.919 4 C -0.203 4.203 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.110 4.110 8 N -0.145 5.145 9 C -0.141 4.141 10 C 0.356 3.644 11 O -0.436 6.436 12 N -0.324 5.324 13 C -0.025 4.025 14 H 0.139 0.861 15 C -0.204 4.204 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.056 3.944 19 N -0.331 5.331 20 C -0.391 4.391 21 H 0.082 0.918 22 C -0.247 4.247 23 N -0.579 5.579 24 Si 0.793 3.207 25 H -0.192 1.192 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.022 3.978 29 C -0.121 4.121 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.195 0.805 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.211 0.789 38 H 0.253 0.747 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.702 14.474 -7.757 32.204 hybrid contribution 0.095 -0.261 0.811 0.858 sum -27.607 14.213 -6.946 31.818 Atomic orbital electron populations 1.23528 0.76107 1.05900 1.02978 1.86388 1.23630 1.25431 1.86379 1.20226 0.91965 0.86746 0.92972 1.21989 1.02354 0.90157 1.05763 1.21470 0.94938 0.97102 0.92423 1.20954 1.00226 0.91404 1.04466 1.23256 0.91754 0.96430 0.99601 1.67529 1.40675 0.97647 1.08635 1.20332 0.89273 0.92378 1.12120 1.18037 0.82267 0.87953 0.76170 1.90774 1.72321 1.29208 1.51309 1.45146 1.05047 1.09386 1.72797 1.21694 0.86300 0.89292 1.05240 0.86079 1.23609 1.00013 1.04307 0.92517 1.21808 0.96409 0.97386 0.95782 1.21640 0.97482 0.95433 0.98712 1.20531 0.90061 0.87857 0.95988 1.44248 1.55203 1.01362 1.32331 1.19530 1.12109 1.05691 1.01778 0.91818 1.25789 0.97822 0.99899 1.01147 1.70190 1.35707 1.19019 1.32999 0.85254 0.77492 0.77493 0.80496 1.19199 1.21771 1.21773 1.20980 0.92544 0.89519 0.94789 1.21428 0.96740 0.93877 1.00089 0.90682 0.90492 0.86991 0.80491 0.88619 0.89532 0.89023 0.78909 0.74684 0.87651 0.87483 0.93428 0.91332 0.98042 0.92666 0.94117 0.96293 0.92653 0.90297 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.83 113.37 1.11 1.22 16 2 O -0.31 -7.56 8.56 -68.70 -0.59 -8.14 16 3 C 0.13 3.02 6.71 22.93 0.15 3.18 16 4 C -0.18 -2.40 8.81 22.55 0.20 -2.20 16 5 C -0.06 -0.63 5.90 -19.72 -0.12 -0.74 16 6 C -0.11 -0.30 10.03 71.24 0.71 0.42 16 7 C 0.05 0.79 10.85 84.89 0.92 1.71 16 8 N -0.43 -9.95 9.54 -184.63 -1.76 -11.71 16 9 C 0.00 -0.14 6.76 41.92 0.28 0.15 16 10 C 0.57 18.82 7.80 86.78 0.68 19.49 16 11 O -0.56 -21.82 14.70 17.09 0.25 -21.57 16 12 N -0.67 -20.47 5.33 -445.67 -2.38 -22.85 16 13 C 0.08 2.60 6.14 44.94 0.28 2.87 16 14 H 0.12 4.21 7.40 -2.39 -0.02 4.20 16 15 C -0.17 -5.01 9.86 30.55 0.30 -4.71 16 16 C -0.11 -3.92 1.94 -52.17 -0.10 -4.02 16 17 C -0.09 -3.78 5.83 30.77 0.18 -3.61 16 18 C 0.18 9.08 5.40 86.43 0.47 9.55 16 19 N -0.61 -31.48 2.94 -698.90 -2.05 -33.53 16 20 C -0.26 -14.73 9.54 84.03 0.80 -13.93 16 21 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 22 C -0.05 -2.93 4.88 84.86 0.41 -2.52 16 23 N -0.93 -56.37 11.23 21.65 0.24 -56.12 16 24 Si 0.96 45.97 29.59 68.60 2.03 48.00 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 28 C 0.15 6.24 6.52 86.43 0.56 6.80 16 29 C -0.08 -2.87 5.37 30.77 0.17 -2.71 16 30 H 0.07 0.59 7.71 -2.38 -0.02 0.57 16 31 H 0.08 0.57 7.68 -2.39 -0.02 0.55 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.18 1.12 6.46 -2.91 -0.02 1.10 16 34 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.09 0.05 8.09 -2.39 -0.02 0.03 16 36 H 0.09 0.06 8.09 -2.39 -0.02 0.04 16 37 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.41 11.40 6.44 -92.71 -0.60 10.80 16 39 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.05 3.13 5.93 -2.39 -0.01 3.12 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 2.29 7.92 -2.39 -0.02 2.27 16 48 H 0.08 2.26 6.75 -2.38 -0.02 2.25 16 49 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -77.59 395.36 3.13 -74.46 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.37 Total: 20.52 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 7.01 Total: 10.95 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -5.95 Total: -124.22 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.34 Total: -29.71 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -77.59 3.13 -74.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016663282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.436 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds