Wall clock time and date at job start Wed Apr 1 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35646 * 117.00170 * 2 1 4 4 C 1.39340 * 120.53715 * 359.97438 * 3 2 1 5 5 C 1.38303 * 118.43835 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.27990 * 179.97438 * 5 4 3 7 7 C 1.38769 * 119.44509 * 359.97438 * 5 4 3 8 8 N 1.31374 * 121.06516 * 359.74131 * 7 5 4 9 9 C 1.32854 * 121.70004 * 0.52522 * 8 7 5 10 10 C 1.47824 * 119.78917 * 179.75047 * 9 8 7 11 11 O 1.21561 * 120.00094 * 179.72477 * 10 9 8 12 12 N 1.34774 * 120.00046 * 359.73286 * 10 9 8 13 13 C 1.47222 * 126.69781 * 0.02562 * 12 10 9 14 14 C 1.55736 * 106.44158 * 148.28473 * 13 12 10 15 15 H 1.08994 * 112.38512 * 258.03351 * 14 13 12 16 16 C 1.54324 * 109.23951 * 132.61966 * 14 13 12 17 17 C 1.55053 * 103.93863 * 223.03486 * 16 14 13 18 18 C 1.55058 * 102.10650 * 40.06064 * 17 16 14 19 19 H 1.08998 * 110.66108 * 78.61655 * 18 17 16 20 20 N 1.46506 * 110.53216 * 201.33130 * 18 17 16 21 21 C 1.36938 * 119.99629 * 269.51229 * 20 18 17 22 22 H 1.07998 * 120.00011 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99969 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99451 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00030 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47019 * 90.00089 * 25 23 21 27 27 H 1.48501 * 109.46818 * 209.99874 * 25 23 21 28 28 H 1.48494 * 109.46891 * 329.99877 * 25 23 21 29 29 C 1.54318 * 103.93686 * 319.94039 * 18 17 16 30 30 H 1.09001 * 111.69393 * 262.79503 * 29 18 17 31 31 C 1.47210 * 126.70574 * 180.02562 * 12 10 9 32 32 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47164 * 299.99383 * 1 2 3 34 34 H 1.09002 * 109.47240 * 59.99964 * 1 2 3 35 35 H 1.08000 * 120.78044 * 359.97438 * 4 3 2 36 36 H 1.08997 * 109.46956 * 89.99622 * 6 5 4 37 37 H 1.08994 * 109.47237 * 210.00515 * 6 5 4 38 38 H 1.08998 * 109.46584 * 330.00341 * 6 5 4 39 39 H 1.08005 * 119.46373 * 180.02562 * 7 5 4 40 40 H 1.09005 * 110.06922 * 267.93149 * 13 12 10 41 41 H 1.08990 * 110.07468 * 29.47300 * 13 12 10 42 42 H 1.08998 * 110.53567 * 341.64949 * 16 14 13 43 43 H 1.09007 * 110.53845 * 104.28155 * 16 14 13 44 44 H 1.09000 * 110.90712 * 281.85714 * 17 16 14 45 45 H 1.09006 * 110.90640 * 158.25793 * 17 16 14 46 46 H 0.96995 * 119.99814 * 89.51209 * 20 18 17 47 47 H 0.97000 * 119.99482 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.07450 * 92.06765 * 31 12 10 49 49 H 1.08996 * 110.11841 * 330.54649 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3843 -0.0005 5 6 1.9696 3.5927 -0.0011 6 6 1.2020 4.8897 -0.0022 7 6 3.3573 3.6011 -0.0005 8 7 4.0419 2.4799 0.0056 9 6 3.4411 1.2950 0.0011 10 6 4.2532 0.0598 0.0027 11 8 3.7074 -1.0265 0.0037 12 7 5.5986 0.1378 0.0033 13 6 6.4086 1.3673 0.0030 14 6 7.7118 1.0368 0.7890 15 1 7.6942 1.4293 1.8057 16 6 8.9307 1.5391 -0.0132 17 6 9.9561 0.3817 0.1016 18 6 9.0514 -0.8696 -0.0406 19 1 8.7968 -1.0432 -1.0862 20 7 9.7105 -2.0476 0.5288 21 6 10.5011 -2.8386 -0.2613 22 1 10.6391 -2.5939 -1.3041 23 6 11.1252 -3.9551 0.2781 24 7 10.9565 -4.2536 1.5488 25 14 12.2043 -5.0338 -0.7996 26 1 13.6032 -4.5375 -0.7537 27 1 12.1588 -6.4326 -0.3029 28 1 11.7087 -4.9889 -2.1987 29 6 7.7893 -0.5100 0.7713 30 1 7.8267 -0.9246 1.7787 31 6 6.5454 -0.9894 0.0043 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 0.2174 2.3526 -0.0014 36 1 1.0165 5.2029 1.0251 37 1 1.7830 5.6552 -0.5164 38 1 0.2513 4.7486 -0.5163 39 1 3.8829 4.5446 -0.0005 40 1 6.6457 1.6587 -1.0202 41 1 5.8699 2.1702 0.5060 42 1 8.6594 1.7076 -1.0553 43 1 9.3300 2.4518 0.4293 44 1 10.4510 0.3954 1.0727 45 1 10.6864 0.4274 -0.7063 46 1 9.5868 -2.2671 1.4655 47 1 11.3929 -5.0336 1.9258 48 1 6.8148 -1.2527 -1.0185 49 1 6.1039 -1.8494 0.5079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026284789.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:52 Heat of formation + Delta-G solvation = -11.911322 kcal Electronic energy + Delta-G solvation = -30495.457875 eV Core-core repulsion = 26423.406059 eV Total energy + Delta-G solvation = -4072.051815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.28215 -39.82007 -38.55844 -38.05919 -35.05172 -34.12911 -33.22787 -31.31331 -30.87038 -29.65448 -28.40487 -28.20255 -27.40265 -24.99561 -24.25571 -23.25481 -22.84818 -22.31730 -20.36864 -19.67285 -18.97144 -17.90984 -17.76674 -17.24750 -16.81230 -16.33825 -16.01480 -15.47225 -15.02522 -14.91580 -14.47393 -14.42091 -14.21161 -13.99485 -13.96096 -13.57364 -13.17668 -13.11826 -12.95485 -12.90252 -12.64169 -12.35231 -12.23218 -11.83529 -11.79579 -11.69535 -11.52949 -11.06271 -10.74125 -10.72643 -10.63243 -10.29734 -10.21726 -10.12461 -10.04161 -9.92135 -9.81601 -9.58389 -9.38451 -8.81286 -8.77215 -8.32373 -6.88161 -5.71183 -2.99357 0.36713 0.87645 2.71761 2.81085 3.09389 3.47703 3.52958 3.54645 3.64648 3.96348 4.13675 4.31176 4.48994 4.53212 4.63689 4.68632 4.77331 4.79383 4.88271 5.02896 5.04919 5.09711 5.11465 5.18316 5.41715 5.46557 5.56910 5.60601 5.64828 5.68716 5.75980 5.84754 5.94135 5.99963 6.08622 6.14116 6.20163 6.24975 6.35272 6.41597 6.51486 6.60470 6.66052 6.81089 6.87201 6.89300 7.13063 7.43571 7.75987 7.77860 8.34408 8.47589 9.58596 10.17003 10.51235 11.51505 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.002440 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.321303 B =11472.567887 C =12651.857476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.142 3.858 4 C -0.179 4.179 5 C -0.076 4.076 6 C -0.115 4.115 7 C 0.054 3.946 8 N -0.409 5.409 9 C 0.046 3.954 10 C 0.583 3.417 11 O -0.521 6.521 12 N -0.599 5.599 13 C 0.100 3.900 14 C -0.101 4.101 15 H 0.084 0.916 16 C -0.114 4.114 17 C -0.142 4.142 18 C 0.184 3.816 19 H 0.058 0.942 20 N -0.720 5.720 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.108 4.108 30 H 0.086 0.914 31 C 0.117 3.883 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.165 0.835 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.072 0.928 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.581 21.765 -2.523 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.180 6.180 3 C 0.091 3.909 4 C -0.206 4.206 5 C -0.078 4.078 6 C -0.172 4.172 7 C -0.107 4.107 8 N -0.120 5.120 9 C -0.093 4.093 10 C 0.370 3.630 11 O -0.396 6.396 12 N -0.331 5.331 13 C -0.023 4.023 14 C -0.120 4.120 15 H 0.102 0.898 16 C -0.153 4.153 17 C -0.183 4.183 18 C 0.073 3.927 19 H 0.075 0.925 20 N -0.360 5.360 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.129 4.129 30 H 0.105 0.895 31 C -0.005 4.005 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.163 0.837 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.182 0.818 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.909 20.774 -2.666 30.309 hybrid contribution -0.526 -0.505 -0.211 0.759 sum -22.434 20.269 -2.876 30.371 Atomic orbital electron populations 1.23226 0.78539 1.04791 1.01093 1.86454 1.20897 1.24437 1.86234 1.20024 0.92193 0.85707 0.92983 1.21607 1.00880 0.91225 1.06850 1.20991 0.95282 0.95718 0.95820 1.20817 0.99891 0.93366 1.03108 1.22710 0.90611 0.96687 1.00677 1.67868 1.38542 0.97381 1.08196 1.20672 0.88471 0.92818 1.07342 1.17191 0.80645 0.87228 0.77976 1.90847 1.70794 1.27688 1.50306 1.48365 1.04063 1.09673 1.70989 1.23024 0.90974 0.87860 1.00420 1.22952 0.94301 0.95656 0.99138 0.89812 1.22445 0.95343 0.98287 0.99175 1.23287 0.97764 0.95643 1.01626 1.21251 0.88909 0.87169 0.95395 0.92453 1.42450 1.56106 1.26704 1.10771 1.19244 1.20581 1.03971 0.93024 0.91210 1.24736 1.01231 0.98907 0.96134 1.69663 1.47923 1.28917 1.11617 0.86211 0.80532 0.80043 0.79549 1.21810 1.21846 1.20789 1.22922 0.95196 0.94366 1.00378 0.89519 1.22213 0.88125 0.89325 1.00853 0.87535 0.92525 0.92544 0.83718 0.90219 0.90472 0.91075 0.81820 0.91673 0.87618 0.91761 0.92327 0.91641 0.92269 0.78201 0.93568 0.91023 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.27 -3.50 8.56 -40.59 -0.35 -3.85 16 3 C 0.14 1.73 6.71 -38.55 -0.26 1.47 16 4 C -0.18 -1.49 8.80 -39.15 -0.34 -1.83 16 5 C -0.08 -0.54 5.90 -104.40 -0.62 -1.16 16 6 C -0.11 -0.41 10.03 36.01 0.36 -0.05 16 7 C 0.05 0.46 10.85 -17.55 -0.19 0.26 16 8 N -0.41 -4.84 6.57 -9.71 -0.06 -4.90 16 9 C 0.05 0.64 6.74 -82.88 -0.56 0.08 16 10 C 0.58 10.09 7.86 -12.34 -0.10 9.99 16 11 O -0.52 -10.60 15.37 -16.64 -0.26 -10.85 16 12 N -0.60 -9.78 3.32 -171.45 -0.57 -10.35 16 13 C 0.10 1.36 5.88 -2.19 -0.01 1.35 16 14 C -0.10 -1.42 4.01 -87.48 -0.35 -1.77 16 15 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.11 -1.55 6.37 -24.95 -0.16 -1.71 16 17 C -0.14 -2.49 6.60 -24.56 -0.16 -2.65 16 18 C 0.18 3.65 3.03 -66.15 -0.20 3.45 16 19 H 0.06 1.18 7.14 -51.93 -0.37 0.80 16 20 N -0.72 -18.11 5.21 -51.70 -0.27 -18.38 16 21 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 25 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 29 C -0.11 -1.87 3.55 -88.52 -0.31 -2.19 16 30 H 0.09 1.60 7.81 -51.93 -0.41 1.20 16 31 C 0.12 2.07 6.54 -3.24 -0.02 2.05 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 34 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 35 H 0.15 0.78 6.46 -52.49 -0.34 0.44 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.20 8.09 -51.93 -0.42 -0.22 16 38 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 39 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.07 0.85 7.20 -51.93 -0.37 0.48 16 41 H 0.11 1.34 5.44 -51.93 -0.28 1.06 16 42 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 43 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.38 10.31 7.61 -40.82 -0.31 9.99 16 47 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.07 1.30 7.13 -51.93 -0.37 0.93 16 49 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -34.89 389.69 -9.49 -44.39 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.38 Total: 7.00 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.18 Total: 1.15 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.18 Total: -61.44 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.60 Total: -14.70 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.89 -9.49 -44.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026284789.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.475 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds