Wall clock time and date at job start Wed Apr 1 2020 03:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35646 * 117.00170 * 2 1 4 4 C 1.39340 * 120.53715 * 359.97438 * 3 2 1 5 5 C 1.38303 * 118.43835 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.27990 * 179.97438 * 5 4 3 7 7 C 1.38769 * 119.44509 * 359.97438 * 5 4 3 8 8 N 1.31374 * 121.06516 * 359.74131 * 7 5 4 9 9 C 1.32854 * 121.70004 * 0.52522 * 8 7 5 10 10 C 1.47824 * 119.78917 * 179.75047 * 9 8 7 11 11 O 1.21561 * 120.00094 * 179.72477 * 10 9 8 12 12 N 1.34774 * 120.00046 * 359.73286 * 10 9 8 13 13 C 1.47222 * 126.69781 * 0.02562 * 12 10 9 14 14 C 1.55736 * 106.44158 * 148.28473 * 13 12 10 15 15 H 1.08994 * 112.38512 * 258.03351 * 14 13 12 16 16 C 1.54324 * 109.23951 * 132.61966 * 14 13 12 17 17 C 1.55053 * 103.93863 * 223.03486 * 16 14 13 18 18 C 1.55058 * 102.10650 * 40.06064 * 17 16 14 19 19 H 1.08998 * 110.66108 * 78.61655 * 18 17 16 20 20 N 1.46506 * 110.53216 * 201.33130 * 18 17 16 21 21 C 1.36938 * 119.99629 * 269.51229 * 20 18 17 22 22 H 1.07998 * 120.00011 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99969 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99451 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00030 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47019 * 90.00089 * 25 23 21 27 27 H 1.48501 * 109.46818 * 209.99874 * 25 23 21 28 28 H 1.48494 * 109.46891 * 329.99877 * 25 23 21 29 29 C 1.54318 * 103.93686 * 319.94039 * 18 17 16 30 30 H 1.09001 * 111.69393 * 262.79503 * 29 18 17 31 31 C 1.47210 * 126.70574 * 180.02562 * 12 10 9 32 32 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47164 * 299.99383 * 1 2 3 34 34 H 1.09002 * 109.47240 * 59.99964 * 1 2 3 35 35 H 1.08000 * 120.78044 * 359.97438 * 4 3 2 36 36 H 1.08997 * 109.46956 * 89.99622 * 6 5 4 37 37 H 1.08994 * 109.47237 * 210.00515 * 6 5 4 38 38 H 1.08998 * 109.46584 * 330.00341 * 6 5 4 39 39 H 1.08005 * 119.46373 * 180.02562 * 7 5 4 40 40 H 1.09005 * 110.06922 * 267.93149 * 13 12 10 41 41 H 1.08990 * 110.07468 * 29.47300 * 13 12 10 42 42 H 1.08998 * 110.53567 * 341.64949 * 16 14 13 43 43 H 1.09007 * 110.53845 * 104.28155 * 16 14 13 44 44 H 1.09000 * 110.90712 * 281.85714 * 17 16 14 45 45 H 1.09006 * 110.90640 * 158.25793 * 17 16 14 46 46 H 0.96995 * 119.99814 * 89.51209 * 20 18 17 47 47 H 0.97000 * 119.99482 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.07450 * 92.06765 * 31 12 10 49 49 H 1.08996 * 110.11841 * 330.54649 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3843 -0.0005 5 6 1.9696 3.5927 -0.0011 6 6 1.2020 4.8897 -0.0022 7 6 3.3573 3.6011 -0.0005 8 7 4.0419 2.4799 0.0056 9 6 3.4411 1.2950 0.0011 10 6 4.2532 0.0598 0.0027 11 8 3.7074 -1.0265 0.0037 12 7 5.5986 0.1378 0.0033 13 6 6.4086 1.3673 0.0030 14 6 7.7118 1.0368 0.7890 15 1 7.6942 1.4293 1.8057 16 6 8.9307 1.5391 -0.0132 17 6 9.9561 0.3817 0.1016 18 6 9.0514 -0.8696 -0.0406 19 1 8.7968 -1.0432 -1.0862 20 7 9.7105 -2.0476 0.5288 21 6 10.5011 -2.8386 -0.2613 22 1 10.6391 -2.5939 -1.3041 23 6 11.1252 -3.9551 0.2781 24 7 10.9565 -4.2536 1.5488 25 14 12.2043 -5.0338 -0.7996 26 1 13.6032 -4.5375 -0.7537 27 1 12.1588 -6.4326 -0.3029 28 1 11.7087 -4.9889 -2.1987 29 6 7.7893 -0.5100 0.7713 30 1 7.8267 -0.9246 1.7787 31 6 6.5454 -0.9894 0.0043 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 0.2174 2.3526 -0.0014 36 1 1.0165 5.2029 1.0251 37 1 1.7830 5.6552 -0.5164 38 1 0.2513 4.7486 -0.5163 39 1 3.8829 4.5446 -0.0005 40 1 6.6457 1.6587 -1.0202 41 1 5.8699 2.1702 0.5060 42 1 8.6594 1.7076 -1.0553 43 1 9.3300 2.4518 0.4293 44 1 10.4510 0.3954 1.0727 45 1 10.6864 0.4274 -0.7063 46 1 9.5868 -2.2671 1.4655 47 1 11.3929 -5.0336 1.9258 48 1 6.8148 -1.2527 -1.0185 49 1 6.1039 -1.8494 0.5079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026284789.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:51 Heat of formation + Delta-G solvation = -34.127639 kcal Electronic energy + Delta-G solvation = -30496.421246 eV Core-core repulsion = 26423.406059 eV Total energy + Delta-G solvation = -4073.015187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.13861 -41.04932 -39.40119 -39.30612 -36.64335 -35.12363 -34.65570 -32.69804 -32.05699 -30.99046 -29.72060 -28.97937 -28.11883 -26.67332 -25.23505 -24.64437 -24.09694 -23.15999 -21.67683 -20.93043 -20.38898 -19.14519 -18.70478 -18.60661 -17.93591 -17.40887 -17.07199 -16.81526 -16.44367 -15.89829 -15.82617 -15.60219 -15.13194 -15.00041 -14.90729 -14.74740 -14.63004 -14.37023 -13.84963 -13.73345 -13.58206 -13.44958 -13.27919 -13.10888 -12.91630 -12.89435 -12.59273 -12.42999 -12.41470 -12.31370 -12.10772 -11.93472 -11.68578 -11.55648 -11.47152 -11.42882 -11.21595 -10.86768 -10.52446 -10.35086 -9.79256 -9.40083 -8.96230 -7.93088 -5.20818 -0.42082 0.19919 1.46160 1.48202 1.56358 1.67893 1.87852 2.17596 2.56725 2.75002 3.09202 3.37952 3.46821 3.51671 3.59391 3.73077 3.76144 3.91094 4.06427 4.07940 4.20301 4.21371 4.25517 4.31558 4.42390 4.49419 4.58543 4.60521 4.64504 4.67108 4.71247 4.77275 4.82570 4.88329 4.90198 5.01480 5.10432 5.13302 5.17722 5.20457 5.28746 5.34949 5.42309 5.48498 5.52379 5.57410 5.63924 6.18800 6.29320 6.50012 6.69935 7.10182 7.34741 8.11971 8.34598 9.30670 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.002440 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.321303 B =11472.567887 C =12651.857476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.312 6.312 3 C 0.129 3.871 4 C -0.175 4.175 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.054 3.946 8 N -0.423 5.423 9 C 0.001 3.999 10 C 0.573 3.427 11 O -0.570 6.570 12 N -0.602 5.602 13 C 0.107 3.893 14 C -0.091 4.091 15 H 0.099 0.901 16 C -0.098 4.098 17 C -0.136 4.136 18 C 0.176 3.824 19 H 0.050 0.950 20 N -0.734 5.734 21 C -0.235 4.235 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.971 3.029 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.271 1.271 29 C -0.102 4.102 30 H 0.069 0.931 31 C 0.121 3.879 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.176 0.824 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.200 0.800 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.371 0.629 47 H 0.249 0.751 48 H 0.063 0.937 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.129 26.301 -3.515 35.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.223 6.223 3 C 0.078 3.922 4 C -0.201 4.201 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.108 4.108 8 N -0.134 5.134 9 C -0.134 4.134 10 C 0.363 3.637 11 O -0.449 6.449 12 N -0.333 5.333 13 C -0.015 4.015 14 C -0.110 4.110 15 H 0.117 0.883 16 C -0.136 4.136 17 C -0.177 4.177 18 C 0.067 3.933 19 H 0.068 0.932 20 N -0.373 5.373 21 C -0.367 4.367 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.212 1.212 27 H -0.225 1.225 28 H -0.196 1.196 29 C -0.122 4.122 30 H 0.087 0.913 31 C -0.002 4.002 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.194 0.806 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.217 0.783 40 H 0.094 0.906 41 H 0.140 0.860 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.203 0.797 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -23.465 25.364 -3.695 34.751 hybrid contribution -0.216 -1.765 0.079 1.780 sum -23.682 23.599 -3.616 33.628 Atomic orbital electron populations 1.23513 0.76110 1.05774 1.03026 1.86397 1.23666 1.25742 1.86462 1.20235 0.91912 0.86746 0.93258 1.21974 1.02270 0.90135 1.05751 1.21483 0.95120 0.96903 0.92375 1.20954 1.00219 0.91416 1.04421 1.23412 0.91662 0.96694 0.99081 1.67691 1.39348 0.97426 1.08902 1.20173 0.88982 0.92205 1.12088 1.17895 0.80811 0.88223 0.76767 1.90790 1.71692 1.29844 1.52560 1.48458 1.04081 1.09896 1.70871 1.23145 0.90172 0.87014 1.01120 1.22984 0.95118 0.92511 1.00420 0.88272 1.22386 0.93289 0.97615 1.00311 1.23105 0.98041 0.95751 1.00772 1.21496 0.90241 0.86585 0.95000 0.93212 1.42646 1.56381 1.28241 1.10065 1.19622 1.19752 1.03906 0.93413 0.90694 1.25550 1.03403 1.00699 0.97456 1.69827 1.49555 1.29471 1.13367 0.85167 0.78835 0.77695 0.78265 1.21218 1.22472 1.19582 1.22755 0.93524 0.97228 0.98694 0.91299 1.21990 0.88807 0.89484 0.99934 0.87271 0.90520 0.90463 0.80640 0.88731 0.88735 0.89701 0.78298 0.90613 0.85958 0.90260 0.89234 0.92932 0.92566 0.79690 0.94176 0.91915 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.25 16 2 O -0.31 -8.33 8.56 -68.62 -0.59 -8.91 16 3 C 0.13 3.11 6.71 22.94 0.15 3.26 16 4 C -0.18 -2.40 8.80 22.55 0.20 -2.21 16 5 C -0.06 -0.57 5.90 -19.72 -0.12 -0.69 16 6 C -0.11 -0.19 10.03 71.24 0.71 0.52 16 7 C 0.05 0.72 10.85 84.89 0.92 1.64 16 8 N -0.42 -9.23 6.57 -184.63 -1.21 -10.44 16 9 C 0.00 0.03 6.74 41.93 0.28 0.31 16 10 C 0.57 21.02 7.86 86.78 0.68 21.70 16 11 O -0.57 -25.19 15.37 17.08 0.26 -24.93 16 12 N -0.60 -20.40 3.32 -814.63 -2.70 -23.11 16 13 C 0.11 2.77 5.88 87.19 0.51 3.29 16 14 C -0.09 -2.43 4.01 -8.76 -0.04 -2.46 16 15 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 16 C -0.10 -2.39 6.37 31.75 0.20 -2.19 16 17 C -0.14 -4.66 6.60 32.00 0.21 -4.45 16 18 C 0.18 7.15 3.03 46.14 0.14 7.29 16 19 H 0.05 2.10 7.14 -2.39 -0.02 2.08 16 20 N -0.73 -38.42 5.21 -317.49 -1.65 -40.07 16 21 C -0.23 -13.45 9.96 84.03 0.84 -12.61 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 24 N -0.97 -61.55 13.06 21.65 0.28 -61.26 16 25 Si 0.97 47.80 29.55 68.60 2.03 49.83 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 28 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 29 C -0.10 -3.64 3.55 -9.43 -0.03 -3.68 16 30 H 0.07 2.71 7.81 -2.39 -0.02 2.69 16 31 C 0.12 4.58 6.54 86.51 0.57 5.15 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 0.69 7.70 -2.39 -0.02 0.67 16 34 H 0.08 0.68 7.70 -2.39 -0.02 0.66 16 35 H 0.18 1.18 6.46 -2.91 -0.02 1.16 16 36 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.09 -0.08 8.09 -2.39 -0.02 -0.10 16 38 H 0.08 -0.01 8.09 -2.39 -0.02 -0.03 16 39 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 40 H 0.08 1.82 7.20 -2.38 -0.02 1.80 16 41 H 0.12 2.83 5.44 -2.39 -0.01 2.82 16 42 H 0.08 1.76 7.22 -2.39 -0.02 1.74 16 43 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 46 H 0.37 21.02 7.61 -92.71 -0.71 20.31 16 47 H 0.25 15.36 8.31 -92.71 -0.77 14.58 16 48 H 0.06 2.44 7.13 -2.39 -0.02 2.43 16 49 H 0.05 2.08 7.92 -2.39 -0.02 2.07 16 Total: -1.00 -82.24 389.69 3.50 -78.74 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.27 Total: 28.27 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.82 Total: 11.89 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -5.29 Total: -134.89 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.32 Total: -33.84 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -82.24 3.50 -78.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026284789.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.615 kcal (2) G-P(sol) polarization free energy of solvation -82.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds