Wall clock time and date at job start Wed Apr 1 2020 03:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35649 * 117.00122 * 2 1 4 4 C 1.39349 * 120.54003 * 0.02562 * 3 2 1 5 5 C 1.38300 * 118.43619 * 179.97438 * 4 3 2 6 6 C 1.50703 * 120.27096 * 179.97438 * 5 4 3 7 7 C 1.38759 * 119.44845 * 359.97438 * 5 4 3 8 8 N 1.31381 * 121.06952 * 359.72439 * 7 5 4 9 9 C 1.32857 * 121.68961 * 0.57030 * 8 7 5 10 10 C 1.47827 * 119.77996 * 179.71097 * 9 8 7 11 11 O 1.21565 * 120.00014 * 179.72450 * 10 9 8 12 12 N 1.34775 * 120.00249 * 359.72182 * 10 9 8 13 13 C 1.49212 * 126.05699 * 0.04824 * 12 10 9 14 14 C 1.50351 * 104.86393 * 172.89940 * 13 12 10 15 15 H 1.09003 * 110.05207 * 278.93742 * 14 13 12 16 16 C 1.51000 * 125.55340 * 144.30755 * 14 13 12 17 17 C 1.56398 * 101.59328 * 203.98719 * 16 14 13 18 18 C 1.55947 * 105.78962 * 25.02347 * 17 16 14 19 19 H 1.09001 * 110.60986 * 126.26729 * 18 17 16 20 20 N 1.46504 * 110.48996 * 248.87230 * 18 17 16 21 21 C 1.36943 * 119.99781 * 269.73257 * 20 18 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31622 * 119.99400 * 179.72313 * 23 21 20 25 25 Si 1.86800 * 120.00144 * 359.72086 * 23 21 20 26 26 H 1.48506 * 109.46719 * 90.00417 * 25 23 21 27 27 H 1.48501 * 109.46793 * 210.00071 * 25 23 21 28 28 H 1.48489 * 109.47333 * 330.00315 * 25 23 21 29 29 C 1.50293 * 104.15284 * 7.53587 * 18 17 16 30 30 H 1.09001 * 109.99421 * 79.59605 * 29 18 17 31 31 C 1.49702 * 126.06046 * 180.02562 * 12 10 9 32 32 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46884 * 299.99958 * 1 2 3 34 34 H 1.08997 * 109.47268 * 60.00186 * 1 2 3 35 35 H 1.08000 * 120.77581 * 359.95439 * 4 3 2 36 36 H 1.09007 * 109.46889 * 90.00277 * 6 5 4 37 37 H 1.09000 * 109.46852 * 209.99359 * 6 5 4 38 38 H 1.08997 * 109.47767 * 330.00029 * 6 5 4 39 39 H 1.08006 * 119.47029 * 180.02562 * 7 5 4 40 40 H 1.09007 * 110.35890 * 291.74006 * 13 12 10 41 41 H 1.08995 * 110.36394 * 53.94066 * 13 12 10 42 42 H 1.08995 * 111.00227 * 322.06992 * 16 14 13 43 43 H 1.08997 * 111.00150 * 85.87477 * 16 14 13 44 44 H 1.09000 * 110.19064 * 265.93949 * 17 16 14 45 45 H 1.09000 * 110.18518 * 144.09803 * 17 16 14 46 46 H 0.97000 * 120.00410 * 89.73582 * 20 18 17 47 47 H 0.97009 * 119.99492 * 179.97438 * 24 23 21 48 48 H 1.09000 * 110.84547 * 36.70780 * 31 12 10 49 49 H 1.08998 * 111.01935 * 273.17506 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3844 0.0005 5 6 1.9697 3.5928 0.0011 6 6 1.2020 4.8896 0.0011 7 6 3.3573 3.6011 0.0016 8 7 4.0420 2.4799 0.0070 9 6 3.4410 1.2950 0.0009 10 6 4.2532 0.0598 0.0009 11 8 3.7074 -1.0264 0.0005 12 7 5.5986 0.1379 0.0014 13 6 6.4055 1.3931 0.0030 14 6 7.8270 0.9375 0.1825 15 1 8.0259 0.7396 1.2358 16 6 9.0398 1.5729 -0.4544 17 6 10.0561 0.3841 -0.4504 18 6 9.1912 -0.9135 -0.4358 19 1 9.4764 -1.5739 -1.2547 20 7 9.3251 -1.6045 0.8491 21 6 10.3025 -2.5483 1.0204 22 1 10.9743 -2.7834 0.2081 23 6 10.4256 -3.2072 2.2359 24 7 11.3615 -4.1182 2.3988 25 14 9.2630 -2.8009 3.6405 26 1 8.0701 -3.6823 3.5663 27 1 9.9573 -3.0157 4.9355 28 1 8.8375 -1.3821 3.5363 29 6 7.7843 -0.4195 -0.6235 30 1 7.6023 -0.2040 -1.6764 31 6 6.5485 -1.0192 0.0009 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 0.2174 2.3527 0.0002 36 1 1.0166 5.2021 1.0288 37 1 1.7831 5.6558 -0.5123 38 1 0.2513 4.7492 -0.5131 39 1 3.8830 4.5446 0.0024 40 1 6.2924 1.9178 -0.9458 41 1 6.1044 2.0365 0.8296 42 1 8.8218 1.8972 -1.4720 43 1 9.4072 2.4037 0.1478 44 1 10.6831 0.4283 0.4401 45 1 10.6737 0.4143 -1.3480 46 1 8.7214 -1.3936 1.5785 47 1 11.4478 -4.5784 3.2484 48 1 6.1636 -1.8367 -0.6086 49 1 6.7527 -1.3578 1.0167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026284791.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:59 Heat of formation + Delta-G solvation = -14.142916 kcal Electronic energy + Delta-G solvation = -30921.215609 eV Core-core repulsion = 26849.067025 eV Total energy + Delta-G solvation = -4072.148584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.19091 -41.43987 -39.56418 -39.30500 -36.75898 -35.14589 -34.68496 -33.00148 -32.05870 -30.99564 -30.12848 -28.97211 -28.08289 -27.03422 -25.04824 -24.77482 -24.04526 -23.16597 -21.13538 -21.06378 -20.55035 -19.75449 -18.74733 -18.53732 -18.12813 -17.27917 -17.05058 -16.73235 -16.53055 -16.12138 -15.74989 -15.43856 -15.42451 -15.12445 -14.97127 -14.76020 -14.61667 -14.51501 -14.00254 -13.81669 -13.60506 -13.55651 -13.41585 -13.29691 -13.02678 -12.94163 -12.70308 -12.46063 -12.42819 -12.26582 -12.23478 -11.93909 -11.87122 -11.63154 -11.43565 -11.34989 -10.99186 -10.86788 -10.52923 -10.51200 -9.83441 -9.42585 -9.28160 -8.02678 -5.33482 -0.42196 0.19607 1.32011 1.35783 1.40462 1.68078 1.74231 2.16227 2.45195 2.75046 2.92026 3.12723 3.29668 3.50978 3.58368 3.63610 3.85029 3.90238 3.91344 4.04802 4.14943 4.19561 4.22212 4.30180 4.31269 4.44813 4.47892 4.58996 4.60260 4.68895 4.69817 4.79075 4.80030 4.84739 4.86452 4.94577 5.00307 5.11259 5.14984 5.19159 5.22655 5.26106 5.36301 5.43979 5.48044 5.63405 5.81354 6.16925 6.22990 6.41951 6.69372 7.08207 7.08478 7.85983 8.03190 9.19225 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.002948 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.415092 B = 9495.428293 C =10478.301408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.311 6.311 3 C 0.129 3.871 4 C -0.177 4.177 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.053 3.947 8 N -0.422 5.422 9 C 0.000 4.000 10 C 0.573 3.427 11 O -0.568 6.568 12 N -0.612 5.612 13 C 0.152 3.848 14 C -0.121 4.121 15 H 0.058 0.942 16 C -0.079 4.079 17 C -0.138 4.138 18 C 0.189 3.811 19 H 0.054 0.946 20 N -0.746 5.746 21 C -0.218 4.218 22 H 0.064 0.936 23 C -0.060 4.060 24 N -0.982 5.982 25 Si 0.940 3.060 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.258 1.258 29 C -0.122 4.122 30 H 0.102 0.898 31 C 0.130 3.870 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.176 0.824 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.198 0.802 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.361 0.639 47 H 0.256 0.744 48 H 0.065 0.935 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.362 26.034 -8.049 37.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.222 6.222 3 C 0.078 3.922 4 C -0.203 4.203 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.110 4.110 8 N -0.133 5.133 9 C -0.136 4.136 10 C 0.362 3.638 11 O -0.448 6.448 12 N -0.345 5.345 13 C 0.032 3.968 14 C -0.140 4.140 15 H 0.076 0.924 16 C -0.116 4.116 17 C -0.178 4.178 18 C 0.080 3.920 19 H 0.072 0.928 20 N -0.389 5.389 21 C -0.349 4.349 22 H 0.082 0.918 23 C -0.252 4.252 24 N -0.634 5.634 25 Si 0.768 3.232 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.183 1.183 29 C -0.142 4.142 30 H 0.120 0.880 31 C 0.009 3.991 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.193 0.807 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.215 0.785 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.195 0.805 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.586 25.052 -8.100 36.023 hybrid contribution -1.245 -0.974 1.323 2.061 sum -25.831 24.078 -6.777 35.957 Atomic orbital electron populations 1.23509 0.76142 1.05768 1.02991 1.86394 1.23634 1.25712 1.86469 1.20251 0.91963 0.86721 0.93241 1.21965 1.02243 0.90159 1.05924 1.21479 0.95125 0.96911 0.92400 1.20950 1.00237 0.91448 1.04356 1.23350 0.91613 0.96632 0.99412 1.67787 1.39832 0.97336 1.08367 1.20196 0.88960 0.92349 1.12112 1.17890 0.80929 0.88186 0.76752 1.90790 1.71684 1.29731 1.52551 1.49723 1.04226 1.09168 1.71405 1.21291 0.87419 0.84448 1.03665 1.22349 0.95021 0.96879 0.99745 0.92387 1.21652 0.91853 0.96620 1.01523 1.23627 0.98231 0.94253 1.01708 1.20403 0.91794 0.92636 0.87172 0.92755 1.42826 1.37848 1.46133 1.12126 1.19083 1.07120 1.11045 0.97659 0.91775 1.25326 1.00397 0.99230 1.00216 1.69856 1.37396 1.30503 1.25611 0.85635 0.78843 0.78700 0.79974 1.21445 1.21928 1.18251 1.22356 0.93189 0.97601 1.01012 0.88003 1.21247 0.88892 0.88833 1.00159 0.87237 0.90661 0.90416 0.80684 0.88853 0.88754 0.89648 0.78532 0.89318 0.89675 0.88940 0.90113 0.93002 0.90711 0.80548 0.93491 0.91628 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.83 113.37 1.11 1.25 16 2 O -0.31 -8.29 8.56 -68.65 -0.59 -8.88 16 3 C 0.13 3.12 6.71 22.94 0.15 3.28 16 4 C -0.18 -2.49 8.81 22.55 0.20 -2.29 16 5 C -0.06 -0.60 5.90 -19.72 -0.12 -0.72 16 6 C -0.11 -0.25 10.03 71.24 0.71 0.47 16 7 C 0.05 0.73 10.85 84.88 0.92 1.65 16 8 N -0.42 -9.40 6.94 -184.63 -1.28 -10.69 16 9 C 0.00 -0.01 6.73 41.93 0.28 0.27 16 10 C 0.57 20.76 7.86 86.78 0.68 21.44 16 11 O -0.57 -24.70 15.47 17.07 0.26 -24.43 16 12 N -0.61 -20.37 3.43 -818.53 -2.80 -23.17 16 13 C 0.15 3.93 5.26 85.00 0.45 4.38 16 14 C -0.12 -3.31 2.73 -10.56 -0.03 -3.34 16 15 H 0.06 1.89 7.64 -2.39 -0.02 1.87 16 16 C -0.08 -1.81 6.71 31.13 0.21 -1.60 16 17 C -0.14 -4.27 6.73 32.80 0.22 -4.05 16 18 C 0.19 7.06 3.46 45.14 0.16 7.21 16 19 H 0.05 2.13 8.09 -2.39 -0.02 2.11 16 20 N -0.75 -35.33 4.61 -322.23 -1.49 -36.81 16 21 C -0.22 -12.55 10.44 84.03 0.88 -11.67 16 22 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 23 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 24 N -0.98 -64.40 13.97 21.65 0.30 -64.10 16 25 Si 0.94 48.12 27.73 68.60 1.90 50.02 16 26 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 27 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 28 H -0.26 -12.13 6.52 99.48 0.65 -11.48 16 29 C -0.12 -3.87 2.59 -10.62 -0.03 -3.90 16 30 H 0.10 2.84 8.13 -2.39 -0.02 2.83 16 31 C 0.13 4.77 6.53 85.07 0.56 5.32 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 0.70 7.70 -2.39 -0.02 0.68 16 34 H 0.08 0.68 7.70 -2.39 -0.02 0.66 16 35 H 0.18 1.24 6.46 -2.91 -0.02 1.22 16 36 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 37 H 0.09 -0.04 8.09 -2.39 -0.02 -0.05 16 38 H 0.08 0.02 8.09 -2.39 -0.02 0.00 16 39 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.09 1.99 7.92 -2.38 -0.02 1.97 16 41 H 0.09 2.12 7.12 -2.39 -0.02 2.10 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.05 1.88 7.98 -2.39 -0.02 1.86 16 45 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.36 17.07 4.06 -92.71 -0.38 16.69 16 47 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 48 H 0.07 2.54 8.10 -2.39 -0.02 2.52 16 49 H 0.05 2.06 6.96 -2.39 -0.02 2.04 16 Total: -1.00 -83.40 387.28 3.67 -79.73 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.53 Total: 23.82 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.83 Total: 14.50 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -5.27 Total: -134.76 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.32 Total: -33.31 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.90 Total: 50.02 kcal Total: -83.40 3.67 -79.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026284791.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.591 kcal (2) G-P(sol) polarization free energy of solvation -83.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds