Wall clock time and date at job start Wed Apr 1 2020 03:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35648 * 117.00066 * 2 1 4 4 C 1.39343 * 120.53972 * 359.97438 * 3 2 1 5 5 C 1.38308 * 118.43917 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.27679 * 180.02562 * 5 4 3 7 7 C 1.38763 * 119.44638 * 359.97438 * 5 4 3 8 8 N 1.31373 * 121.06368 * 359.71767 * 7 5 4 9 9 C 1.32859 * 121.69752 * 0.57963 * 8 7 5 10 10 C 1.47830 * 119.78381 * 179.70263 * 9 8 7 11 11 O 1.21559 * 120.00211 * 185.28486 * 10 9 8 12 12 N 1.34774 * 120.00326 * 5.28926 * 10 9 8 13 13 C 1.48357 * 128.18998 * 5.42843 * 12 10 9 14 14 C 1.54910 * 104.06670 * 138.26596 * 13 12 10 15 15 H 1.09001 * 112.54829 * 263.88991 * 14 13 12 16 16 C 1.53565 * 108.93943 * 139.48812 * 14 13 12 17 17 C 1.53953 * 106.03108 * 229.12380 * 16 14 13 18 18 C 1.53954 * 104.89094 * 29.55837 * 17 16 14 19 19 H 1.08992 * 110.14496 * 211.29707 * 18 17 16 20 20 N 1.46498 * 110.19519 * 89.61010 * 18 17 16 21 21 C 1.36938 * 120.00085 * 142.90269 * 20 18 17 22 22 H 1.08006 * 119.99980 * 0.02562 * 21 20 18 23 23 C 1.38817 * 120.00058 * 180.02562 * 21 20 18 24 24 N 1.31614 * 119.99904 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99596 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47087 * 90.00138 * 25 23 21 27 27 H 1.48505 * 109.46538 * 210.00017 * 25 23 21 28 28 H 1.48492 * 109.47295 * 329.99504 * 25 23 21 29 29 C 1.53557 * 106.03257 * 330.44245 * 18 17 16 30 30 H 1.08998 * 111.66103 * 254.94072 * 29 18 17 31 31 C 1.48349 * 128.19646 * 185.75648 * 12 10 9 32 32 H 1.09005 * 109.47225 * 300.00414 * 1 2 3 33 33 H 1.09004 * 109.47103 * 60.00289 * 1 2 3 34 34 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 35 35 H 1.08004 * 120.78041 * 0.04229 * 4 3 2 36 36 H 1.09006 * 109.47200 * 89.99255 * 6 5 4 37 37 H 1.08991 * 109.47348 * 209.99693 * 6 5 4 38 38 H 1.09008 * 109.47251 * 330.00151 * 6 5 4 39 39 H 1.07991 * 119.46709 * 180.02562 * 7 5 4 40 40 H 1.09000 * 110.46879 * 257.00233 * 13 12 10 41 41 H 1.08997 * 110.46685 * 19.60347 * 13 12 10 42 42 H 1.08995 * 110.13924 * 109.98247 * 16 14 13 43 43 H 1.09000 * 110.13970 * 348.26636 * 16 14 13 44 44 H 1.09005 * 110.35312 * 270.70807 * 17 16 14 45 45 H 1.08996 * 110.35576 * 148.41447 * 17 16 14 46 46 H 0.97007 * 120.00204 * 322.90277 * 20 18 17 47 47 H 0.97003 * 119.99804 * 180.02562 * 24 23 21 48 48 H 1.08996 * 110.46913 * 340.39332 * 31 12 10 49 49 H 1.08998 * 110.47341 * 103.00174 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 -0.0005 5 6 1.9696 3.5928 -0.0011 6 6 1.2020 4.8897 -0.0011 7 6 3.3573 3.6012 -0.0005 8 7 4.0419 2.4800 0.0061 9 6 3.4410 1.2951 0.0010 10 6 4.2531 0.0598 0.0021 11 8 3.7116 -1.0237 -0.0995 12 7 5.5940 0.1350 0.1158 13 6 6.4280 1.3377 0.3585 14 6 7.4877 0.8605 1.3828 15 1 7.2123 1.0977 2.4104 16 6 8.8498 1.4625 1.0077 17 6 9.8501 0.2923 1.0216 18 6 9.0153 -0.9462 0.6480 19 1 9.4203 -1.8328 1.1356 20 7 9.0062 -1.1303 -0.8053 21 6 9.0426 -2.3922 -1.3359 22 1 9.0777 -3.2518 -0.6829 23 6 9.0345 -2.5666 -2.7130 24 7 8.9923 -1.5192 -3.5088 25 14 9.0835 -4.2882 -3.4366 26 1 7.6972 -4.7900 -3.6144 27 1 9.7696 -4.2522 -4.7532 28 1 9.8227 -5.1905 -2.5178 29 6 7.5928 -0.6674 1.1545 30 1 7.3669 -1.2392 2.0546 31 6 6.5856 -0.9643 0.0213 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 0.2174 2.3527 -0.0003 36 1 1.0172 5.2025 1.0266 37 1 1.7826 5.6555 -0.5152 38 1 0.2508 4.7489 -0.5145 39 1 3.8828 4.5446 -0.0005 40 1 6.9064 1.6625 -0.5654 41 1 5.8241 2.1416 0.7793 42 1 9.1421 2.2148 1.7402 43 1 8.8034 1.9049 0.0126 44 1 10.2807 0.1734 2.0159 45 1 10.6358 0.4565 0.2843 46 1 8.9743 -0.3583 -1.3919 47 1 8.9862 -1.6411 -4.4711 48 1 6.1029 -1.9281 0.1832 49 1 7.0851 -0.9449 -0.9473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026284792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:06 Heat of formation + Delta-G solvation = -0.895704 kcal Electronic energy + Delta-G solvation = -31317.306680 eV Core-core repulsion = 27245.732538 eV Total energy + Delta-G solvation = -4071.574142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.05643 -39.66768 -38.38163 -37.85224 -34.75946 -33.91746 -33.27278 -31.12118 -30.80710 -29.30400 -28.20849 -28.03875 -27.22046 -24.97979 -24.13108 -23.27734 -22.98205 -22.19850 -19.86860 -19.43695 -18.35170 -17.72572 -17.51887 -17.34874 -16.78595 -16.14051 -15.72078 -15.27634 -14.86721 -14.70291 -14.52531 -14.25542 -14.14904 -13.93271 -13.75202 -13.39297 -13.13382 -13.01442 -12.87879 -12.60302 -12.41602 -12.34501 -12.07193 -11.68879 -11.64004 -11.51181 -11.16216 -10.86178 -10.73573 -10.59379 -10.40100 -10.20156 -10.03857 -9.96896 -9.87428 -9.74519 -9.68812 -9.53394 -9.15527 -8.90662 -8.55923 -7.95514 -6.86525 -5.75171 -3.04269 0.57549 1.06374 2.97796 2.99706 3.41776 3.48609 3.54158 3.54874 3.89736 4.18203 4.32188 4.50105 4.62929 4.66002 4.71029 4.82378 4.90656 4.97080 5.10820 5.17355 5.18716 5.26103 5.27013 5.32597 5.56089 5.61674 5.66621 5.80077 5.84318 5.85239 5.91709 5.95707 6.12496 6.17415 6.21428 6.27782 6.38500 6.44741 6.51947 6.57097 6.70084 6.79775 6.82273 7.01961 7.04692 7.08075 7.41165 7.66260 7.75707 8.18496 8.43192 8.68795 9.55102 10.10271 10.45146 11.46508 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.003357 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.886134 B = 8338.262082 C = 9582.479580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.139 3.861 4 C -0.180 4.180 5 C -0.080 4.080 6 C -0.113 4.113 7 C 0.053 3.947 8 N -0.408 5.408 9 C 0.051 3.949 10 C 0.582 3.418 11 O -0.528 6.528 12 N -0.602 5.602 13 C 0.110 3.890 14 C -0.102 4.102 15 H 0.073 0.927 16 C -0.111 4.111 17 C -0.132 4.132 18 C 0.177 3.823 19 H 0.059 0.941 20 N -0.711 5.711 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.009 4.009 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.125 4.125 30 H 0.068 0.932 31 C 0.103 3.897 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.163 0.837 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.064 0.936 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 14.844 10.638 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.180 6.180 3 C 0.088 3.912 4 C -0.206 4.206 5 C -0.082 4.082 6 C -0.170 4.170 7 C -0.107 4.107 8 N -0.119 5.119 9 C -0.088 4.088 10 C 0.369 3.631 11 O -0.404 6.404 12 N -0.334 5.334 13 C -0.014 4.014 14 C -0.122 4.122 15 H 0.091 0.909 16 C -0.149 4.149 17 C -0.171 4.171 18 C 0.066 3.934 19 H 0.078 0.922 20 N -0.351 5.351 21 C -0.375 4.375 22 H 0.090 0.910 23 C -0.205 4.205 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.208 1.208 29 C -0.148 4.148 30 H 0.086 0.914 31 C -0.017 4.017 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.161 0.839 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.180 0.820 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.537 13.792 10.497 22.622 hybrid contribution -1.270 -0.453 -0.639 1.492 sum -15.807 13.339 9.858 22.912 Atomic orbital electron populations 1.23203 0.78792 1.04627 1.00982 1.86462 1.20681 1.24496 1.86352 1.20040 0.92274 0.85613 0.93288 1.21578 1.00738 0.91272 1.07060 1.20958 0.95286 0.95635 0.96367 1.20795 0.99848 0.93455 1.02922 1.22683 0.90564 0.96695 1.00802 1.67871 1.38741 0.97342 1.07947 1.20834 0.88506 0.92994 1.06449 1.17100 0.80707 0.86956 0.78378 1.90817 1.70750 1.27856 1.51000 1.49006 1.04082 1.11981 1.68291 1.22993 0.91624 0.88390 0.98344 1.22655 0.95300 0.95979 0.98233 0.90875 1.22096 0.94133 0.97603 1.01096 1.22563 0.98266 0.95662 1.00600 1.20710 0.90903 0.95433 0.86365 0.92238 1.42530 1.86798 1.06107 0.99710 1.19263 1.43201 0.84907 0.90161 0.91038 1.24718 1.02682 0.97000 0.96115 1.69650 1.57234 1.27824 1.03008 0.86239 0.77614 0.84213 0.78449 1.21616 1.21885 1.20768 1.23237 0.99351 0.94436 0.97727 0.91360 1.23263 0.86650 0.88855 1.02967 0.92692 0.92584 0.87666 0.83867 0.90391 0.90552 0.91171 0.81974 0.91020 0.88550 0.92648 0.91447 0.92421 0.91119 0.78004 0.93484 0.91754 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 101.05 0.99 1.17 16 2 O -0.27 -4.10 8.58 -40.52 -0.35 -4.45 16 3 C 0.14 2.02 6.71 -38.56 -0.26 1.76 16 4 C -0.18 -1.87 8.80 -39.14 -0.34 -2.21 16 5 C -0.08 -0.74 5.90 -104.40 -0.62 -1.35 16 6 C -0.11 -0.60 10.03 36.01 0.36 -0.24 16 7 C 0.05 0.57 10.85 -17.55 -0.19 0.38 16 8 N -0.41 -5.94 6.80 -9.71 -0.07 -6.01 16 9 C 0.05 0.87 6.72 -82.88 -0.56 0.31 16 10 C 0.58 12.00 7.89 -12.34 -0.10 11.90 16 11 O -0.53 -12.46 15.43 -16.57 -0.26 -12.72 16 12 N -0.60 -11.93 3.31 -169.69 -0.56 -12.49 16 13 C 0.11 1.82 5.88 -2.01 -0.01 1.81 16 14 C -0.10 -1.59 3.95 -88.35 -0.35 -1.94 16 15 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.11 -1.62 6.37 -25.94 -0.17 -1.78 16 17 C -0.13 -2.13 6.47 -25.74 -0.17 -2.30 16 18 C 0.18 3.43 3.51 -67.15 -0.24 3.19 16 19 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 20 N -0.71 -16.91 2.98 -52.66 -0.16 -17.07 16 21 C -0.24 -6.57 9.10 -15.06 -0.14 -6.71 16 22 H 0.07 1.89 7.78 -52.48 -0.41 1.49 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 25 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 C -0.12 -2.28 3.93 -88.58 -0.35 -2.62 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 C 0.10 2.22 6.17 -2.24 -0.01 2.21 16 32 H 0.05 0.38 7.70 -51.93 -0.40 -0.02 16 33 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.14 1.04 6.46 -52.48 -0.34 0.70 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 38 H 0.07 0.31 8.09 -51.92 -0.42 -0.11 16 39 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.07 1.26 7.22 -51.93 -0.37 0.88 16 41 H 0.10 1.47 5.56 -51.93 -0.29 1.18 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.03 7.13 -51.93 -0.37 0.66 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 46 H 0.39 9.81 7.75 -40.82 -0.32 9.49 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.06 1.49 7.85 -51.93 -0.41 1.09 16 49 H 0.13 3.31 5.15 -51.93 -0.27 3.05 16 LS Contribution 386.38 15.07 5.82 5.82 Total: -1.00 -33.78 386.38 -9.44 -43.21 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.34 Total: 9.73 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.23 Total: 3.24 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.06 Total: -62.46 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.60 Total: -17.17 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.78 -9.44 -43.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026284792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.317 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds