Wall clock time and date at job start Wed Apr 1 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35649 * 116.99992 * 2 1 4 4 C 1.39343 * 120.53977 * 0.02562 * 3 2 1 5 5 C 1.38296 * 118.44139 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.28029 * 179.97438 * 5 4 3 7 7 C 1.38769 * 119.44603 * 0.27040 * 5 4 3 8 8 N 1.31378 * 121.06394 * 359.45430 * 7 5 4 9 9 C 1.32859 * 121.69549 * 0.53416 * 8 7 5 10 10 C 1.47827 * 119.78322 * 179.72703 * 9 8 7 11 11 O 1.21557 * 119.99889 * 188.77002 * 10 9 8 12 12 N 1.34783 * 120.00053 * 8.77772 * 10 9 8 13 13 C 1.46884 * 120.46310 * 187.59911 * 12 10 9 14 14 C 1.52853 * 109.01451 * 235.48416 * 13 12 10 15 15 C 1.52669 * 109.18121 * 307.82198 * 14 13 12 16 16 C 1.53484 * 113.62548 * 188.99483 * 15 14 13 17 17 N 1.47666 * 85.98912 * 137.70901 * 16 15 14 18 18 C 1.36936 * 134.45506 * 155.70359 * 17 16 15 19 19 H 1.07999 * 119.99946 * 178.37989 * 18 17 16 20 20 C 1.38814 * 120.00074 * 358.37446 * 18 17 16 21 21 N 1.31617 * 119.99991 * 352.08076 * 20 18 17 22 22 Si 1.86803 * 119.99768 * 172.08252 * 20 18 17 23 23 H 1.48500 * 109.47110 * 94.51610 * 22 20 18 24 24 H 1.48498 * 109.46740 * 214.51214 * 22 20 18 25 25 H 1.48494 * 109.47250 * 334.51252 * 22 20 18 26 26 C 1.47668 * 91.08441 * 335.67957 * 17 16 15 27 27 C 1.52677 * 113.18536 * 57.45698 * 15 14 13 28 28 C 1.46875 * 120.46235 * 7.87522 * 12 10 9 29 29 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47052 * 299.99356 * 1 2 3 31 31 H 1.08991 * 109.47379 * 59.99794 * 1 2 3 32 32 H 1.07999 * 120.77884 * 0.03994 * 4 3 2 33 33 H 1.09000 * 109.47165 * 89.99885 * 6 5 4 34 34 H 1.08999 * 109.47224 * 209.99577 * 6 5 4 35 35 H 1.09000 * 109.46752 * 330.00220 * 6 5 4 36 36 H 1.08000 * 119.47149 * 179.72214 * 7 5 4 37 37 H 1.08995 * 109.59134 * 355.31626 * 13 12 10 38 38 H 1.09005 * 109.58682 * 115.74802 * 13 12 10 39 39 H 1.09003 * 109.60941 * 187.84381 * 14 13 12 40 40 H 1.09002 * 109.44891 * 67.70567 * 14 13 12 41 41 H 1.09001 * 113.78719 * 251.97652 * 16 15 14 42 42 H 1.08996 * 113.79152 * 23.43723 * 16 15 14 43 43 H 0.97002 * 120.00054 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.78784 * 270.04421 * 26 17 16 45 45 H 1.09002 * 113.78732 * 138.58933 * 26 17 16 46 46 H 1.08993 * 109.52844 * 182.51888 * 27 15 14 47 47 H 1.09003 * 109.58270 * 62.33833 * 27 15 14 48 48 H 1.09000 * 109.58698 * 244.25699 * 28 12 10 49 49 H 1.08995 * 109.59649 * 4.68836 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9695 3.5928 0.0000 6 6 1.2019 4.8896 -0.0001 7 6 3.3571 3.6012 -0.0068 8 7 4.0419 2.4800 -0.0020 9 6 3.4410 1.2951 -0.0010 10 6 4.2532 0.0599 -0.0016 11 8 3.7175 -1.0196 -0.1612 12 7 5.5875 0.1306 0.1750 13 6 6.4247 -1.0652 0.0115 14 6 7.2353 -1.2840 1.2888 15 6 7.9685 0.0069 1.6449 16 6 8.9839 -0.1568 2.7842 17 7 9.8774 0.6919 1.9706 18 6 10.9380 1.5118 2.2500 19 1 11.4548 2.0183 1.4483 20 6 11.3488 1.6921 3.5636 21 7 10.6287 1.2036 4.5512 22 14 12.9234 2.6281 3.9297 23 1 12.6016 4.0529 4.1972 24 1 13.5843 2.0378 5.1213 25 1 13.8360 2.5375 2.7618 26 6 9.1692 0.3016 0.7350 27 6 7.0326 1.1994 1.8262 28 6 6.2240 1.4031 0.5395 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2174 2.3527 0.0016 33 1 1.0172 5.2026 1.0276 34 1 1.7825 5.6555 -0.5142 35 1 0.2507 4.7488 -0.5135 36 1 3.8827 4.5447 -0.0118 37 1 5.7909 -1.9330 -0.1704 38 1 7.1040 -0.9235 -0.8291 39 1 7.9598 -2.0827 1.1300 40 1 6.5636 -1.5579 2.1025 41 1 8.6718 0.3049 3.7210 42 1 9.3424 -1.1783 2.9104 43 1 10.9156 1.3299 5.4692 44 1 9.5829 -0.5837 0.2521 45 1 9.0044 1.1276 0.0431 46 1 7.6189 2.0944 2.0338 47 1 6.3534 1.0078 2.6570 48 1 6.8887 1.7223 -0.2632 49 1 5.4580 2.1606 0.7053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035724687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:52 Heat of formation + Delta-G solvation = 22.425501 kcal Electronic energy + Delta-G solvation = -31079.385435 eV Core-core repulsion = 27008.822576 eV Total energy + Delta-G solvation = -4070.562859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.23339 -41.15486 -39.77534 -39.31689 -36.98651 -34.97923 -34.29224 -32.32044 -32.01951 -31.77046 -29.19064 -28.67486 -27.98294 -26.72341 -25.38405 -24.51207 -24.11736 -23.45540 -22.69338 -21.30740 -19.36869 -18.68929 -18.61979 -18.40312 -17.80410 -17.10010 -16.97024 -16.77162 -16.16266 -16.12900 -16.01334 -15.59848 -15.31355 -15.05848 -14.94669 -14.75706 -14.58196 -14.35981 -13.98670 -13.67912 -13.64834 -13.50234 -13.34894 -13.05458 -13.00447 -12.87297 -12.76466 -12.60663 -12.39566 -12.35693 -12.18010 -12.06196 -11.75244 -11.63525 -11.19352 -11.09134 -10.95262 -10.84632 -10.52998 -9.90146 -9.66259 -9.34425 -8.84635 -7.85493 -5.18482 -0.39918 0.18479 1.45409 1.47472 1.56568 1.71729 1.99075 2.20521 2.49787 2.73709 3.11954 3.32204 3.44693 3.51278 3.65113 3.67978 3.90176 3.99224 4.02879 4.09941 4.19675 4.25478 4.28872 4.36141 4.39806 4.45462 4.62505 4.70273 4.74552 4.75057 4.78758 4.84620 4.87965 4.89973 4.92419 5.02686 5.09651 5.15717 5.20636 5.22155 5.30747 5.33299 5.39260 5.53906 5.60921 5.67780 5.84880 5.99505 6.21723 6.42374 6.69965 6.95481 7.17783 7.65417 8.63465 9.30073 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002753 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.689989 B =10169.146082 C =11352.867821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.307 6.307 3 C 0.133 3.867 4 C -0.172 4.172 5 C -0.057 4.057 6 C -0.114 4.114 7 C 0.048 3.952 8 N -0.423 5.423 9 C -0.002 4.002 10 C 0.565 3.435 11 O -0.561 6.561 12 N -0.590 5.590 13 C 0.118 3.882 14 C -0.108 4.108 15 C -0.084 4.084 16 C 0.161 3.839 17 N -0.635 5.635 18 C -0.230 4.230 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.951 5.951 22 Si 0.975 3.025 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.270 1.270 26 C 0.131 3.869 27 C -0.089 4.089 28 C 0.085 3.915 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.179 0.821 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.193 0.807 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.012 0.988 43 H 0.246 0.754 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.000 5.890 -12.003 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.218 6.218 3 C 0.082 3.918 4 C -0.198 4.198 5 C -0.059 4.059 6 C -0.171 4.171 7 C -0.114 4.114 8 N -0.134 5.134 9 C -0.137 4.137 10 C 0.353 3.647 11 O -0.440 6.440 12 N -0.321 5.321 13 C -0.004 4.004 14 C -0.147 4.147 15 C -0.085 4.085 16 C 0.036 3.964 17 N -0.361 5.361 18 C -0.359 4.359 19 H 0.099 0.901 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.195 1.195 26 C 0.007 3.993 27 C -0.127 4.127 28 C -0.037 4.037 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.196 0.804 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.210 0.790 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.061 5.216 -11.930 28.242 hybrid contribution 0.507 0.027 0.824 0.967 sum -24.554 5.242 -11.106 27.454 Atomic orbital electron populations 1.23521 0.76099 1.05900 1.02945 1.86372 1.23610 1.25368 1.86444 1.20138 0.91792 0.86739 0.93140 1.21990 1.02352 0.90103 1.05393 1.21407 0.94764 0.97108 0.92660 1.20952 1.00281 0.91483 1.04353 1.23422 0.91985 0.96786 0.99188 1.67393 1.38157 0.98003 1.09824 1.20423 0.89433 0.92429 1.11404 1.18071 0.81976 0.87777 0.76870 1.90746 1.71717 1.29467 1.52051 1.47986 1.05645 1.11540 1.66920 1.21523 0.93246 0.88025 0.97651 1.21643 0.98678 0.96835 0.97495 1.22152 0.93643 0.95622 0.97086 1.22243 0.87393 0.91779 0.94988 1.46227 1.36201 1.49480 1.04226 1.19395 1.05371 1.18657 0.92442 0.90065 1.25581 1.02387 1.02864 0.95317 1.70052 1.39709 1.52053 0.98185 0.85112 0.79548 0.77794 0.77185 1.21157 1.22285 1.19498 1.22725 0.89409 0.97173 0.90021 1.21408 0.96383 0.97118 0.97797 1.23080 0.99197 0.86343 0.95091 0.86932 0.90745 0.90525 0.80419 0.88908 0.89058 0.89364 0.79030 0.89570 0.90175 0.89805 0.92472 0.94008 0.97035 0.94492 0.93698 0.93065 0.92304 0.93389 0.91715 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.83 113.37 1.11 1.23 16 2 O -0.31 -7.62 8.60 -68.82 -0.59 -8.21 16 3 C 0.13 3.13 6.70 22.93 0.15 3.29 16 4 C -0.17 -2.48 8.80 22.55 0.20 -2.28 16 5 C -0.06 -0.70 5.90 -19.72 -0.12 -0.82 16 6 C -0.11 -0.47 10.03 71.24 0.71 0.24 16 7 C 0.05 0.79 10.85 84.89 0.92 1.71 16 8 N -0.42 -10.40 6.08 -184.63 -1.12 -11.52 16 9 C 0.00 -0.05 6.60 41.93 0.28 0.23 16 10 C 0.56 19.32 7.64 86.78 0.66 19.98 16 11 O -0.56 -21.82 14.60 16.92 0.25 -21.58 16 12 N -0.59 -19.19 2.95 -822.94 -2.43 -21.62 16 13 C 0.12 3.62 6.29 86.26 0.54 4.16 16 14 C -0.11 -3.58 5.24 30.44 0.16 -3.42 16 15 C -0.08 -3.30 0.77 -52.03 -0.04 -3.34 16 16 C 0.16 8.12 6.80 86.31 0.59 8.71 16 17 N -0.64 -33.72 3.53 -722.65 -2.55 -36.27 16 18 C -0.23 -13.29 10.69 84.03 0.90 -12.39 16 19 H 0.08 4.49 7.84 -2.91 -0.02 4.46 16 20 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 21 N -0.95 -59.08 11.34 21.65 0.25 -58.83 16 22 Si 0.98 46.87 29.56 68.60 2.03 48.90 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 C 0.13 5.48 7.72 86.32 0.67 6.15 16 27 C -0.09 -3.35 5.22 30.60 0.16 -3.19 16 28 C 0.08 2.68 5.81 86.42 0.50 3.19 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 0.61 7.70 -2.39 -0.02 0.59 16 31 H 0.08 0.59 7.70 -2.39 -0.02 0.57 16 32 H 0.18 1.23 6.46 -2.91 -0.02 1.21 16 33 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.09 0.20 8.09 -2.39 -0.02 0.18 16 35 H 0.09 0.13 8.09 -2.39 -0.02 0.11 16 36 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.09 2.69 6.98 -2.39 -0.02 2.67 16 38 H 0.08 2.25 8.08 -2.38 -0.02 2.23 16 39 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.04 2.38 6.91 -2.39 -0.02 2.36 16 42 H 0.01 0.61 8.09 -2.39 -0.02 0.59 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 45 H 0.05 2.03 7.41 -2.39 -0.02 2.01 16 46 H 0.06 2.52 8.01 -2.39 -0.02 2.51 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.06 2.01 7.49 -2.39 -0.02 2.00 16 49 H 0.16 4.66 3.87 -77.86 -0.30 4.36 16 Total: -1.00 -80.06 386.21 4.36 -75.70 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.67 Total: 13.53 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 7.87 Total: 19.90 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -5.85 Total: -128.25 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.34 Total: -29.79 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -80.06 4.36 -75.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035724687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.129 kcal (2) G-P(sol) polarization free energy of solvation -80.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds