Wall clock time and date at job start Wed Apr 1 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36396 * 120.34356 * 2 1 4 4 C 1.40196 * 119.26527 * 180.02562 * 3 2 1 5 5 C 1.35351 * 119.94693 * 0.02562 * 4 3 2 6 6 N 1.35764 * 120.70403 * 359.97063 * 5 4 3 7 7 C 1.46491 * 119.62858 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46957 * 90.00123 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.47143 * 121.01457 * 0.28191 * 10 8 7 12 12 C 1.53042 * 107.69104 * 122.55578 * 11 10 8 13 13 C 1.51147 * 111.11215 * 54.39693 * 12 11 10 14 14 H 1.09004 * 108.45663 * 185.39080 * 13 12 11 15 15 C 1.53990 * 113.17245 * 304.88860 * 13 12 11 16 16 H 1.09003 * 112.71730 * 284.02412 * 15 13 12 17 17 C 1.56015 * 100.38607 * 163.66162 * 15 13 12 18 18 C 1.54499 * 102.62557 * 323.14025 * 17 15 13 19 19 N 1.46467 * 113.22955 * 65.10901 * 13 12 11 20 20 C 1.36936 * 126.05602 * 29.51969 * 19 13 12 21 21 H 1.08001 * 120.00054 * 0.02562 * 20 19 13 22 22 C 1.38819 * 119.99885 * 179.97438 * 20 19 13 23 23 N 1.31615 * 120.00038 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99667 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46760 * 90.00264 * 24 22 20 26 26 H 1.48498 * 109.47058 * 209.99974 * 24 22 20 27 27 H 1.48496 * 109.47353 * 330.00104 * 24 22 20 28 28 C 1.46526 * 121.01203 * 179.97438 * 10 8 7 29 29 C 1.34663 * 120.74466 * 0.30270 * 6 5 4 30 30 O 1.22062 * 119.98128 * 179.70002 * 29 6 5 31 31 H 1.08999 * 109.47236 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47217 * 120.00107 * 1 2 3 33 33 H 1.09003 * 109.47397 * 240.00001 * 1 2 3 34 34 H 1.08003 * 120.37047 * 0.04540 * 3 2 1 35 35 H 1.07997 * 120.02910 * 180.02562 * 4 3 2 36 36 H 1.08001 * 119.64819 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47166 * 330.00389 * 7 6 5 38 38 H 1.08994 * 109.47507 * 210.00095 * 7 6 5 39 39 H 1.09001 * 109.81350 * 242.10314 * 11 10 8 40 40 H 1.08996 * 109.81658 * 3.00491 * 11 10 8 41 41 H 1.08994 * 109.15802 * 174.82015 * 12 11 10 42 42 H 1.08999 * 109.15141 * 294.03948 * 12 11 10 43 43 H 1.09004 * 110.77930 * 204.86302 * 17 15 13 44 44 H 1.08998 * 110.78655 * 81.42509 * 17 15 13 45 45 H 1.09000 * 109.90756 * 263.45438 * 18 17 15 46 46 H 1.08999 * 110.05213 * 142.29264 * 18 17 15 47 47 H 0.96993 * 119.99800 * 179.97438 * 23 22 20 48 48 H 1.08991 * 109.35161 * 355.83217 * 28 10 8 49 49 H 1.09003 * 109.34887 * 115.38664 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5978 1.1507 -0.0005 5 6 4.2512 -0.0346 -0.0016 6 7 3.5637 -1.2052 -0.0015 7 6 4.2949 -2.4746 -0.0021 8 6 4.5462 -2.9101 1.4186 9 8 4.1528 -2.2277 2.3407 10 7 5.2028 -4.0612 1.6643 11 6 5.6895 -4.9066 0.5627 12 6 7.2004 -5.0751 0.7382 13 6 7.5330 -5.6040 2.1146 14 1 8.6171 -5.6161 2.2269 15 6 6.9529 -4.7422 3.2513 16 1 7.5116 -3.8192 3.4069 17 6 7.0762 -5.7354 4.4482 18 6 6.7555 -7.0967 3.7917 19 7 7.0300 -6.9593 2.3497 20 6 6.8474 -7.9275 1.3986 21 1 7.0823 -7.7203 0.3651 22 6 6.3614 -9.1757 1.7633 23 7 6.0765 -9.4286 3.0231 24 14 6.1116 -10.4961 0.4658 25 1 7.3553 -11.2959 0.3279 26 1 4.9940 -11.3851 0.8730 27 1 5.7872 -9.8571 -0.8348 28 6 5.4597 -4.5055 3.0368 29 6 2.2171 -1.2127 -0.0065 30 8 1.6130 -2.2733 -0.0119 31 1 -0.3634 1.0276 0.0005 32 1 -0.3634 -0.5139 -0.8900 33 1 -0.3634 -0.5138 0.8900 34 1 1.6677 2.1191 0.0007 35 1 4.1557 2.0754 -0.0001 36 1 5.3312 -0.0493 -0.0024 37 1 5.2473 -2.3451 -0.5163 38 1 3.7049 -3.2336 -0.5158 39 1 5.2021 -5.8807 0.6014 40 1 5.4799 -4.4255 -0.3926 41 1 7.5721 -5.7726 -0.0122 42 1 7.6864 -4.1092 0.6003 43 1 6.3476 -5.4989 5.2236 44 1 8.0884 -5.7300 4.8526 45 1 5.7059 -7.3458 3.9475 46 1 7.3886 -7.8752 4.2174 47 1 5.7366 -10.3006 3.2777 48 1 5.1131 -3.7430 3.7341 49 1 4.9200 -5.4341 3.2227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036715987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:44 Heat of formation + Delta-G solvation = 1.676508 kcal Electronic energy + Delta-G solvation = -31474.048237 eV Core-core repulsion = 27402.585634 eV Total energy + Delta-G solvation = -4071.462603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.64333 -40.04122 -38.28000 -36.95860 -35.29027 -35.08601 -32.88195 -31.70971 -31.40962 -29.71662 -28.67213 -27.41196 -27.27669 -25.25659 -24.08911 -22.91054 -22.59970 -22.59165 -20.16247 -19.82984 -18.38359 -17.66516 -17.52911 -17.19879 -16.42023 -16.36369 -15.66571 -15.39359 -15.20330 -14.94572 -14.51642 -14.41279 -13.99320 -13.95977 -13.75006 -13.37223 -13.07626 -12.88307 -12.78473 -12.54428 -12.42358 -12.19606 -12.17146 -12.00343 -11.70579 -11.61176 -11.47672 -11.15625 -11.11310 -10.83514 -10.72157 -10.37519 -10.20153 -10.07736 -10.00855 -9.97756 -9.70146 -9.66992 -9.50557 -8.64865 -8.30178 -7.96700 -6.87480 -5.76581 -3.09860 0.68547 1.78920 2.34161 2.63694 3.17225 3.36019 3.40657 3.43839 3.58367 4.35965 4.40322 4.43873 4.46635 4.66670 4.86170 4.95859 5.05370 5.08863 5.10769 5.17267 5.27874 5.42429 5.43960 5.49122 5.52768 5.60780 5.65805 5.69624 5.81353 5.91202 5.95841 6.03308 6.06412 6.16502 6.20305 6.25348 6.29329 6.36285 6.38066 6.47301 6.62145 6.69619 6.81036 6.86177 6.93618 7.50976 7.56736 7.61022 7.77191 7.95751 8.19619 8.22611 9.15242 9.77691 10.44891 11.35423 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.002908 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.994021 B = 9626.325861 C =10335.831136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.209 4.209 3 C -0.024 4.024 4 C -0.231 4.231 5 C 0.138 3.862 6 N -0.478 5.478 7 C 0.071 3.929 8 C 0.502 3.498 9 O -0.542 6.542 10 N -0.593 5.593 11 C 0.110 3.890 12 C -0.128 4.128 13 C 0.170 3.830 14 H 0.018 0.982 15 C -0.116 4.116 16 H 0.076 0.924 17 C -0.142 4.142 18 C 0.176 3.824 19 N -0.593 5.593 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.127 3.873 29 C 0.522 3.478 30 O -0.544 6.544 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.043 0.957 47 H 0.252 0.748 48 H 0.078 0.922 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 20.853 -6.882 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.213 4.213 3 C -0.046 4.046 4 C -0.254 4.254 5 C 0.011 3.989 6 N -0.188 5.188 7 C -0.054 4.054 8 C 0.288 3.712 9 O -0.420 6.420 10 N -0.325 5.325 11 C -0.013 4.013 12 C -0.167 4.167 13 C 0.063 3.937 14 H 0.035 0.965 15 C -0.137 4.137 16 H 0.095 0.905 17 C -0.181 4.181 18 C 0.051 3.949 19 N -0.319 5.319 20 C -0.356 4.356 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.006 3.994 29 C 0.323 3.677 30 O -0.425 6.425 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.016 20.218 -6.402 21.303 hybrid contribution 0.193 -0.851 -0.563 1.039 sum -1.823 19.367 -6.966 20.663 Atomic orbital electron populations 1.20398 0.89142 1.01848 1.02882 1.20774 0.97820 0.91943 1.10736 1.21313 0.93905 0.97880 0.91465 1.20559 0.94628 0.97117 1.13128 1.21882 0.98374 0.84810 0.93810 1.45043 1.08026 1.06530 1.59178 1.21872 0.99182 0.87196 0.97142 1.20473 0.78615 0.81365 0.90770 1.90707 1.51381 1.54222 1.45648 1.48026 1.54868 1.20876 1.08757 1.21870 0.95733 0.96174 0.87481 1.21598 0.94893 1.00301 0.99924 1.20238 0.95837 0.86394 0.91273 0.96466 1.22659 0.95386 0.97716 0.97898 0.90538 1.23139 1.00637 0.97784 0.96546 1.21252 1.00003 0.90671 0.82959 1.44316 1.76370 1.07264 1.03981 1.18931 1.37315 0.90661 0.88665 0.90328 1.24783 1.01438 0.97687 0.96299 1.69945 1.49870 1.22076 1.14648 0.86193 0.77423 0.82003 0.80554 1.21698 1.21748 1.20678 1.21459 0.95950 1.00533 0.81506 1.16938 0.80415 0.91228 0.79098 1.90964 1.66425 1.32768 1.52384 0.91673 0.91383 0.91299 0.85000 0.83815 0.82385 0.86202 0.85263 0.88656 0.91199 0.90358 0.92737 0.91990 0.92276 0.93499 0.93878 0.93721 0.90312 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.64 36.01 0.35 -0.56 16 2 C -0.21 -2.56 5.90 -104.42 -0.62 -3.17 16 3 C -0.02 -0.22 9.72 -39.51 -0.38 -0.60 16 4 C -0.23 -1.86 10.01 -39.88 -0.40 -2.26 16 5 C 0.14 1.27 10.28 -16.84 -0.17 1.10 16 6 N -0.48 -6.04 2.07 -121.07 -0.25 -6.29 16 7 C 0.07 0.86 4.18 -5.20 -0.02 0.84 16 8 C 0.50 8.00 7.78 -10.98 -0.09 7.92 16 9 O -0.54 -10.50 15.86 5.55 0.09 -10.41 16 10 N -0.59 -9.58 2.94 -173.31 -0.51 -10.09 16 11 C 0.11 1.64 6.27 -3.67 -0.02 1.62 16 12 C -0.13 -1.96 5.19 -27.64 -0.14 -2.10 16 13 C 0.17 3.16 2.85 -68.37 -0.19 2.97 16 14 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 15 C -0.12 -1.96 3.84 -88.65 -0.34 -2.30 16 16 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 17 C -0.14 -2.55 6.28 -24.33 -0.15 -2.70 16 18 C 0.18 4.02 4.64 -2.74 -0.01 4.01 16 19 N -0.59 -13.64 3.12 -164.49 -0.51 -14.15 16 20 C -0.23 -5.74 9.02 -15.06 -0.14 -5.87 16 21 H 0.08 1.88 6.69 -52.49 -0.35 1.53 16 22 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 23 N -0.92 -25.97 10.38 55.49 0.58 -25.39 16 24 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.13 2.25 5.44 -4.18 -0.02 2.23 16 29 C 0.52 7.98 7.39 -15.45 -0.11 7.86 16 30 O -0.54 -10.32 16.08 4.86 0.08 -10.24 16 31 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.13 0.80 7.95 -52.48 -0.42 0.38 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.16 0.92 8.04 -52.49 -0.42 0.50 16 37 H 0.12 0.93 7.65 -51.93 -0.40 0.53 16 38 H 0.13 1.63 7.13 -51.93 -0.37 1.26 16 39 H 0.10 1.75 7.48 -51.93 -0.39 1.36 16 40 H 0.07 0.79 5.99 -51.93 -0.31 0.47 16 41 H 0.08 1.24 7.01 -51.93 -0.36 0.87 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.03 7.97 -51.93 -0.41 0.61 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.05 1.20 6.99 -51.93 -0.36 0.84 16 46 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 49 H 0.08 1.64 6.79 -51.93 -0.35 1.28 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -34.39 382.60 -9.77 -44.15 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.41 Total: 1.70 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -2.57 Total: 8.73 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.70 Total: -55.92 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.17 Total: -20.65 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.39 -9.77 -44.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036715987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.831 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds