Wall clock time and date at job start Wed Apr 1 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36396 * 120.34356 * 2 1 4 4 C 1.40196 * 119.26527 * 180.02562 * 3 2 1 5 5 C 1.35351 * 119.94693 * 0.02562 * 4 3 2 6 6 N 1.35764 * 120.70403 * 359.97063 * 5 4 3 7 7 C 1.46491 * 119.62858 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46957 * 90.00123 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.47143 * 121.01457 * 0.28191 * 10 8 7 12 12 C 1.53042 * 107.69104 * 122.55578 * 11 10 8 13 13 C 1.51147 * 111.11215 * 54.39693 * 12 11 10 14 14 H 1.09004 * 108.45663 * 185.39080 * 13 12 11 15 15 C 1.53990 * 113.17245 * 304.88860 * 13 12 11 16 16 H 1.09003 * 112.71730 * 284.02412 * 15 13 12 17 17 C 1.56015 * 100.38607 * 163.66162 * 15 13 12 18 18 C 1.54499 * 102.62557 * 323.14025 * 17 15 13 19 19 N 1.46467 * 113.22955 * 65.10901 * 13 12 11 20 20 C 1.36936 * 126.05602 * 29.51969 * 19 13 12 21 21 H 1.08001 * 120.00054 * 0.02562 * 20 19 13 22 22 C 1.38819 * 119.99885 * 179.97438 * 20 19 13 23 23 N 1.31615 * 120.00038 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99667 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46760 * 90.00264 * 24 22 20 26 26 H 1.48498 * 109.47058 * 209.99974 * 24 22 20 27 27 H 1.48496 * 109.47353 * 330.00104 * 24 22 20 28 28 C 1.46526 * 121.01203 * 179.97438 * 10 8 7 29 29 C 1.34663 * 120.74466 * 0.30270 * 6 5 4 30 30 O 1.22062 * 119.98128 * 179.70002 * 29 6 5 31 31 H 1.08999 * 109.47236 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47217 * 120.00107 * 1 2 3 33 33 H 1.09003 * 109.47397 * 240.00001 * 1 2 3 34 34 H 1.08003 * 120.37047 * 0.04540 * 3 2 1 35 35 H 1.07997 * 120.02910 * 180.02562 * 4 3 2 36 36 H 1.08001 * 119.64819 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47166 * 330.00389 * 7 6 5 38 38 H 1.08994 * 109.47507 * 210.00095 * 7 6 5 39 39 H 1.09001 * 109.81350 * 242.10314 * 11 10 8 40 40 H 1.08996 * 109.81658 * 3.00491 * 11 10 8 41 41 H 1.08994 * 109.15802 * 174.82015 * 12 11 10 42 42 H 1.08999 * 109.15141 * 294.03948 * 12 11 10 43 43 H 1.09004 * 110.77930 * 204.86302 * 17 15 13 44 44 H 1.08998 * 110.78655 * 81.42509 * 17 15 13 45 45 H 1.09000 * 109.90756 * 263.45438 * 18 17 15 46 46 H 1.08999 * 110.05213 * 142.29264 * 18 17 15 47 47 H 0.96993 * 119.99800 * 179.97438 * 23 22 20 48 48 H 1.08991 * 109.35161 * 355.83217 * 28 10 8 49 49 H 1.09003 * 109.34887 * 115.38664 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5978 1.1507 -0.0005 5 6 4.2512 -0.0346 -0.0016 6 7 3.5637 -1.2052 -0.0015 7 6 4.2949 -2.4746 -0.0021 8 6 4.5462 -2.9101 1.4186 9 8 4.1528 -2.2277 2.3407 10 7 5.2028 -4.0612 1.6643 11 6 5.6895 -4.9066 0.5627 12 6 7.2004 -5.0751 0.7382 13 6 7.5330 -5.6040 2.1146 14 1 8.6171 -5.6161 2.2269 15 6 6.9529 -4.7422 3.2513 16 1 7.5116 -3.8192 3.4069 17 6 7.0762 -5.7354 4.4482 18 6 6.7555 -7.0967 3.7917 19 7 7.0300 -6.9593 2.3497 20 6 6.8474 -7.9275 1.3986 21 1 7.0823 -7.7203 0.3651 22 6 6.3614 -9.1757 1.7633 23 7 6.0765 -9.4286 3.0231 24 14 6.1116 -10.4961 0.4658 25 1 7.3553 -11.2959 0.3279 26 1 4.9940 -11.3851 0.8730 27 1 5.7872 -9.8571 -0.8348 28 6 5.4597 -4.5055 3.0368 29 6 2.2171 -1.2127 -0.0065 30 8 1.6130 -2.2733 -0.0119 31 1 -0.3634 1.0276 0.0005 32 1 -0.3634 -0.5139 -0.8900 33 1 -0.3634 -0.5138 0.8900 34 1 1.6677 2.1191 0.0007 35 1 4.1557 2.0754 -0.0001 36 1 5.3312 -0.0493 -0.0024 37 1 5.2473 -2.3451 -0.5163 38 1 3.7049 -3.2336 -0.5158 39 1 5.2021 -5.8807 0.6014 40 1 5.4799 -4.4255 -0.3926 41 1 7.5721 -5.7726 -0.0122 42 1 7.6864 -4.1092 0.6003 43 1 6.3476 -5.4989 5.2236 44 1 8.0884 -5.7300 4.8526 45 1 5.7059 -7.3458 3.9475 46 1 7.3886 -7.8752 4.2174 47 1 5.7366 -10.3006 3.2777 48 1 5.1131 -3.7430 3.7341 49 1 4.9200 -5.4341 3.2227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036715987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:33 Heat of formation + Delta-G solvation = -20.180921 kcal Electronic energy + Delta-G solvation = -31474.996046 eV Core-core repulsion = 27402.585634 eV Total energy + Delta-G solvation = -4072.410412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 11.40 seconds Orbital eigenvalues (eV) -42.58498 -41.36452 -39.69942 -37.95559 -36.58281 -36.12322 -34.64007 -33.20419 -32.25688 -31.24974 -30.01306 -28.77116 -28.08988 -26.84782 -25.64366 -24.05900 -23.83711 -23.38641 -21.85943 -21.14618 -19.80576 -18.73408 -18.50399 -18.32955 -18.04900 -17.35316 -16.91580 -16.73941 -16.54312 -16.29055 -15.94943 -15.66017 -15.31522 -15.11058 -14.76467 -14.68900 -14.37559 -14.03591 -13.93821 -13.80341 -13.62175 -13.25208 -13.21251 -13.11460 -13.07384 -12.95999 -12.84251 -12.66807 -12.56305 -12.42541 -12.23888 -12.00131 -11.69017 -11.53231 -11.51225 -11.28869 -11.19594 -11.04837 -10.66090 -10.59681 -9.68167 -8.82369 -8.80188 -7.79284 -5.11963 -0.07970 0.96630 1.39947 1.45340 1.47358 1.48246 1.55906 2.02113 2.52542 2.68803 3.32842 3.40938 3.59295 3.61653 3.76298 3.81560 3.91148 3.97281 4.04113 4.09092 4.18709 4.23144 4.24610 4.25613 4.39466 4.42397 4.55571 4.61415 4.74889 4.75952 4.79593 4.80522 4.86670 4.93532 4.96410 5.12902 5.19858 5.22017 5.25888 5.28132 5.39048 5.44594 5.49629 5.59475 5.67619 5.70340 5.80372 6.08059 6.24465 6.36007 6.94432 7.01498 7.14517 7.85192 8.51947 9.32548 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.002908 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.994021 B = 9626.325861 C =10335.831136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.255 4.255 3 C 0.000 4.000 4 C -0.225 4.225 5 C 0.127 3.873 6 N -0.481 5.481 7 C 0.075 3.925 8 C 0.501 3.499 9 O -0.580 6.580 10 N -0.594 5.594 11 C 0.112 3.888 12 C -0.122 4.122 13 C 0.160 3.840 14 H 0.022 0.978 15 C -0.098 4.098 16 H 0.111 0.889 17 C -0.131 4.131 18 C 0.184 3.816 19 N -0.609 5.609 20 C -0.214 4.214 21 H 0.095 0.905 22 C -0.073 4.073 23 N -0.956 5.956 24 Si 0.966 3.034 25 H -0.290 1.290 26 H -0.307 1.307 27 H -0.262 1.262 28 C 0.134 3.866 29 C 0.498 3.502 30 O -0.608 6.608 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.168 0.832 35 H 0.186 0.814 36 H 0.200 0.800 37 H 0.176 0.824 38 H 0.120 0.880 39 H 0.053 0.947 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.005 0.995 46 H 0.004 0.996 47 H 0.240 0.760 48 H 0.075 0.925 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 25.463 -9.241 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.259 4.259 3 C -0.021 4.021 4 C -0.247 4.247 5 C 0.001 3.999 6 N -0.189 5.189 7 C -0.050 4.050 8 C 0.289 3.711 9 O -0.460 6.460 10 N -0.326 5.326 11 C -0.009 4.009 12 C -0.161 4.161 13 C 0.054 3.946 14 H 0.039 0.961 15 C -0.118 4.118 16 H 0.129 0.871 17 C -0.170 4.170 18 C 0.059 3.941 19 N -0.334 5.334 20 C -0.343 4.343 21 H 0.113 0.887 22 C -0.265 4.265 23 N -0.606 5.606 24 Si 0.796 3.204 25 H -0.218 1.218 26 H -0.235 1.235 27 H -0.187 1.187 28 C 0.011 3.989 29 C 0.303 3.697 30 O -0.495 6.495 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.186 0.814 35 H 0.203 0.797 36 H 0.217 0.783 37 H 0.193 0.807 38 H 0.138 0.862 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.023 0.977 46 H 0.022 0.978 47 H 0.050 0.950 48 H 0.093 0.907 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.440 24.900 -8.810 26.417 hybrid contribution -0.490 -2.122 0.196 2.187 sum -0.050 22.778 -8.614 24.353 Atomic orbital electron populations 1.20368 0.88993 1.03364 1.01141 1.20913 0.98426 0.92157 1.14359 1.21815 0.94797 0.97990 0.87529 1.21167 0.94329 0.98429 1.10726 1.22725 1.00358 0.83851 0.92919 1.45105 1.07472 1.07842 1.58513 1.22004 1.01433 0.87230 0.94356 1.21150 0.77183 0.80583 0.92142 1.90686 1.52564 1.55435 1.47351 1.48053 1.55084 1.21215 1.08198 1.21894 0.95289 0.94683 0.89079 1.21568 0.95025 1.02201 0.97295 1.20537 0.95704 0.84318 0.94079 0.96094 1.22614 0.94730 0.98281 0.96177 0.87086 1.23016 1.01869 0.94979 0.97116 1.20947 0.96639 0.92624 0.83872 1.44560 1.76083 1.09173 1.03600 1.19378 1.34426 0.90707 0.89769 0.88731 1.25554 1.02955 1.00147 0.97850 1.70182 1.52188 1.21702 1.16546 0.85243 0.76460 0.79493 0.79215 1.21761 1.23465 1.18677 1.21200 0.96254 0.98501 0.82951 1.17536 0.81504 0.91539 0.79164 1.90910 1.67815 1.34700 1.56114 0.88312 0.92612 0.93821 0.81423 0.79679 0.78301 0.80651 0.86230 0.92855 0.86582 0.90517 0.88476 0.90955 0.90469 0.97692 0.97799 0.95032 0.90678 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.64 71.24 0.69 -1.07 16 2 C -0.25 -6.04 5.90 -19.74 -0.12 -6.15 16 3 C 0.00 0.00 9.72 22.32 0.22 0.22 16 4 C -0.22 -2.44 10.01 22.08 0.22 -2.22 16 5 C 0.13 1.73 10.28 83.42 0.86 2.59 16 6 N -0.48 -11.02 2.07 -655.08 -1.36 -12.37 16 7 C 0.07 1.59 4.18 85.64 0.36 1.94 16 8 C 0.50 15.10 7.78 87.66 0.68 15.78 16 9 O -0.58 -21.99 15.86 -3.04 -0.05 -22.04 16 10 N -0.59 -18.31 2.94 -820.61 -2.41 -20.72 16 11 C 0.11 3.12 6.27 86.27 0.54 3.66 16 12 C -0.12 -3.29 5.19 30.00 0.16 -3.14 16 13 C 0.16 5.60 2.85 44.73 0.13 5.73 16 14 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 15 C -0.10 -3.10 3.84 -9.51 -0.04 -3.14 16 16 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 17 C -0.13 -4.67 6.28 32.15 0.20 -4.47 16 18 C 0.18 8.89 4.64 86.71 0.40 9.30 16 19 N -0.61 -28.39 3.12 -674.32 -2.11 -30.50 16 20 C -0.21 -10.91 9.02 84.04 0.76 -10.15 16 21 H 0.10 4.43 6.69 -2.91 -0.02 4.41 16 22 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 23 N -0.96 -57.48 10.38 21.65 0.22 -57.25 16 24 Si 0.97 44.97 29.55 68.60 2.03 46.99 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.31 -14.97 7.11 99.48 0.71 -14.27 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 C 0.13 4.72 5.44 86.27 0.47 5.18 16 29 C 0.50 15.28 7.39 84.82 0.63 15.91 16 30 O -0.61 -24.48 16.08 -5.52 -0.09 -24.57 16 31 H 0.10 1.32 7.89 -2.39 -0.02 1.30 16 32 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.17 1.15 7.95 -2.91 -0.02 1.12 16 35 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 36 H 0.20 0.97 8.04 -2.91 -0.02 0.95 16 37 H 0.18 1.67 7.65 -2.38 -0.02 1.65 16 38 H 0.12 2.87 7.13 -2.39 -0.02 2.85 16 39 H 0.05 1.95 7.48 -2.39 -0.02 1.94 16 40 H 0.12 2.13 5.99 -2.39 -0.01 2.12 16 41 H 0.08 2.14 7.01 -2.39 -0.02 2.12 16 42 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 2.42 7.97 -2.39 -0.02 2.40 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.00 0.27 6.99 -2.39 -0.02 0.25 16 46 H 0.00 0.21 7.56 -2.39 -0.02 0.19 16 47 H 0.24 14.37 8.31 -92.71 -0.77 13.59 16 48 H 0.07 2.69 7.00 -2.39 -0.02 2.67 16 49 H 0.04 1.72 6.79 -2.39 -0.02 1.71 16 Total: -1.00 -85.29 382.60 3.81 -81.48 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.95 Total: 12.55 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 6.62 Total: 26.43 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -5.65 Total: -120.84 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.14 Total: -46.61 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -85.29 3.81 -81.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036715987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.297 kcal (2) G-P(sol) polarization free energy of solvation -85.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.41 seconds