Wall clock time and date at job start Wed Apr 1 2020 03:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35649 * 117.00261 * 2 1 4 4 C 1.39346 * 120.53968 * 0.27111 * 3 2 1 5 5 C 1.38306 * 118.43571 * 180.26143 * 4 3 2 6 6 C 1.50692 * 120.27436 * 179.75152 * 5 4 3 7 7 C 1.38763 * 119.44660 * 359.72994 * 5 4 3 8 8 N 1.31380 * 121.06884 * 0.02562 * 7 5 4 9 9 C 1.32865 * 121.69429 * 359.97438 * 8 7 5 10 10 C 1.47826 * 119.78127 * 180.02562 * 9 8 7 11 11 O 1.21558 * 119.99873 * 186.68484 * 10 9 8 12 12 N 1.34773 * 120.00052 * 6.68425 * 10 9 8 13 13 C 1.46831 * 120.30402 * 186.50390 * 12 10 9 14 14 C 1.52960 * 107.39816 * 235.00797 * 13 12 10 15 15 C 1.53046 * 109.99907 * 298.54066 * 14 13 12 16 16 H 1.08998 * 110.62027 * 289.28472 * 15 14 13 17 17 C 1.51774 * 112.25458 * 52.95437 * 15 14 13 18 18 H 1.08998 * 105.74986 * 207.28224 * 17 15 14 19 19 C 1.53394 * 105.82121 * 95.44044 * 17 15 14 20 20 C 1.54467 * 102.53326 * 29.54007 * 19 17 15 21 21 N 1.46872 * 106.66380 * 332.27403 * 20 19 17 22 22 C 1.36938 * 125.33888 * 195.32970 * 21 20 19 23 23 H 1.08000 * 120.00245 * 176.97798 * 22 21 20 24 24 C 1.38819 * 119.99581 * 356.98210 * 22 21 20 25 25 N 1.31624 * 119.99505 * 217.75939 * 24 22 21 26 26 Si 1.86791 * 120.00265 * 37.75647 * 24 22 21 27 27 H 1.48505 * 109.47304 * 267.30668 * 26 24 22 28 28 H 1.48504 * 109.47162 * 147.30869 * 26 24 22 29 29 H 1.48498 * 109.47489 * 27.30618 * 26 24 22 30 30 C 1.45258 * 120.15521 * 6.74039 * 12 10 9 31 31 H 1.08998 * 109.47355 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47122 * 300.00429 * 1 2 3 33 33 H 1.08997 * 109.47178 * 59.99989 * 1 2 3 34 34 H 1.07997 * 120.77793 * 0.02562 * 4 3 2 35 35 H 1.09003 * 109.47185 * 269.97915 * 6 5 4 36 36 H 1.09004 * 109.47734 * 29.97457 * 6 5 4 37 37 H 1.08996 * 109.47341 * 149.98226 * 6 5 4 38 38 H 1.08000 * 119.46481 * 179.97438 * 7 5 4 39 39 H 1.08993 * 109.87210 * 115.53397 * 13 12 10 40 40 H 1.09003 * 109.92523 * 354.50881 * 13 12 10 41 41 H 1.09004 * 109.38427 * 178.37973 * 14 13 12 42 42 H 1.08999 * 109.38854 * 58.70438 * 14 13 12 43 43 H 1.09005 * 110.79291 * 271.28554 * 19 17 15 44 44 H 1.08998 * 110.79908 * 147.80174 * 19 17 15 45 45 H 1.09007 * 110.02030 * 212.97760 * 20 19 17 46 46 H 1.09000 * 110.06057 * 91.59763 * 20 19 17 47 47 H 0.96999 * 120.00350 * 4.99756 * 25 24 22 48 48 H 1.08996 * 108.84685 * 21.99820 * 30 12 10 49 49 H 1.09001 * 107.99320 * 264.71334 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3844 0.0057 5 6 1.9698 3.5928 -0.0001 6 6 1.2022 4.8896 0.0000 7 6 3.3574 3.6011 -0.0056 8 7 4.0421 2.4798 -0.0059 9 6 3.4410 1.2949 -0.0005 10 6 4.2531 0.0596 -0.0005 11 8 3.7129 -1.0229 -0.1181 12 7 5.5925 0.1337 0.1299 13 6 6.4185 -1.0720 -0.0115 14 6 7.2613 -1.2004 1.2585 15 6 8.1767 0.0174 1.4046 16 1 8.9672 -0.0043 0.6545 17 6 7.4106 1.3252 1.3243 18 1 8.1210 2.0616 0.9486 19 6 7.1214 1.7302 2.7753 20 6 8.3169 1.1186 3.5386 21 7 8.7590 -0.0480 2.7637 22 6 9.5854 -1.0381 3.2245 23 1 9.8171 -1.8846 2.5951 24 6 10.1251 -0.9536 4.5007 25 7 11.3588 -1.3558 4.7213 26 14 9.1007 -0.2690 5.9046 27 1 9.3498 1.1893 6.0340 28 1 9.4771 -0.9495 7.1697 29 1 7.6608 -0.5023 5.6264 30 6 6.2283 1.4079 0.4167 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2175 2.3527 0.0106 35 1 1.0131 5.2000 -1.0276 36 1 0.2532 4.7502 0.5179 37 1 1.7851 5.6567 0.5098 38 1 3.8830 4.5445 -0.0106 39 1 7.0696 -0.9752 -0.8801 40 1 5.7802 -1.9486 -0.1227 41 1 7.8681 -2.1041 1.2001 42 1 6.6030 -1.2641 2.1248 43 1 6.1814 1.2975 3.1178 44 1 7.1100 2.8152 2.8793 45 1 8.0036 0.8076 4.5353 46 1 9.1253 1.8461 3.6119 47 1 11.9151 -1.6432 3.9805 48 1 5.4934 2.0746 0.8677 49 1 6.5496 1.8443 -0.5291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036738380.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:54 Heat of formation + Delta-G solvation = 24.608571 kcal Electronic energy + Delta-G solvation = -31578.067965 eV Core-core repulsion = 27507.599771 eV Total energy + Delta-G solvation = -4070.468194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 25.78 seconds Orbital eigenvalues (eV) -41.36524 -39.81896 -38.55332 -38.18371 -35.35631 -34.21021 -32.74405 -31.76963 -31.29428 -30.16020 -28.61715 -28.20579 -27.45619 -25.24178 -23.78189 -23.14542 -23.02834 -22.19457 -20.67607 -20.36564 -18.51984 -17.83491 -17.77015 -17.36803 -16.90826 -16.32510 -15.93195 -15.36642 -15.26193 -14.90508 -14.86375 -14.43611 -14.31164 -14.04021 -13.86187 -13.48632 -13.27311 -13.15589 -13.07715 -12.91534 -12.66782 -12.53333 -12.34034 -11.92323 -11.86543 -11.79225 -11.63373 -11.49519 -11.12395 -10.74191 -10.60362 -10.34534 -10.13994 -10.01496 -9.90726 -9.83044 -9.58330 -9.12594 -9.02422 -8.74633 -8.25055 -8.18670 -7.02521 -6.33883 -3.00970 0.38483 0.88945 2.71660 2.82219 3.12750 3.49898 3.59771 3.62557 3.75579 3.97490 4.15836 4.32192 4.51388 4.56334 4.69693 4.70799 4.77875 4.88859 4.96490 5.05840 5.08003 5.09442 5.17726 5.22219 5.38782 5.41947 5.45955 5.49216 5.62475 5.71219 5.74147 5.85076 5.89994 5.96946 5.98665 6.11505 6.20253 6.28961 6.36740 6.44093 6.59040 6.63870 6.74328 6.87227 6.91467 7.00020 7.11882 7.42831 7.66423 7.83376 8.34290 8.41956 9.09696 9.70090 10.38110 11.14409 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003129 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.838533 B = 8947.420565 C = 9485.505792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.143 3.857 4 C -0.180 4.180 5 C -0.074 4.074 6 C -0.115 4.115 7 C 0.051 3.949 8 N -0.405 5.405 9 C 0.040 3.960 10 C 0.569 3.431 11 O -0.524 6.524 12 N -0.583 5.583 13 C 0.111 3.889 14 C -0.138 4.138 15 C 0.176 3.824 16 H 0.047 0.953 17 C -0.109 4.109 18 H 0.067 0.933 19 C -0.120 4.120 20 C 0.119 3.881 21 N -0.604 5.604 22 C -0.339 4.339 23 H 0.080 0.920 24 C -0.009 4.009 25 N -0.900 5.900 26 Si 1.043 2.957 27 H -0.296 1.296 28 H -0.301 1.301 29 H -0.294 1.294 30 C 0.118 3.882 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.165 0.835 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.035 0.965 46 H 0.030 0.970 47 H 0.266 0.734 48 H 0.120 0.880 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.735 13.217 -12.744 30.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.092 3.908 4 C -0.206 4.206 5 C -0.076 4.076 6 C -0.172 4.172 7 C -0.109 4.109 8 N -0.116 5.116 9 C -0.098 4.098 10 C 0.355 3.645 11 O -0.400 6.400 12 N -0.315 5.315 13 C -0.012 4.012 14 C -0.178 4.178 15 C 0.069 3.931 16 H 0.065 0.935 17 C -0.129 4.129 18 H 0.085 0.915 19 C -0.159 4.159 20 C -0.006 4.006 21 N -0.330 5.330 22 C -0.465 4.465 23 H 0.098 0.902 24 C -0.211 4.211 25 N -0.538 5.538 26 Si 0.877 3.123 27 H -0.224 1.224 28 H -0.229 1.229 29 H -0.222 1.222 30 C -0.005 4.005 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.075 0.925 48 H 0.137 0.863 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.907 12.588 -11.149 28.417 hybrid contribution -1.179 -0.040 -1.472 1.886 sum -24.087 12.548 -12.621 29.948 Atomic orbital electron populations 1.23218 0.78569 1.04727 1.01119 1.86439 1.20871 1.24498 1.86285 1.20005 0.92190 0.85662 0.92953 1.21609 1.00869 0.91245 1.06887 1.20982 0.95261 0.95711 0.95684 1.20821 0.99933 0.93407 1.03065 1.22783 0.90664 0.96864 1.00594 1.68068 1.37821 0.97462 1.08282 1.20725 0.88593 0.92966 1.07483 1.17598 0.81853 0.87133 0.77905 1.90805 1.71066 1.27814 1.50327 1.47497 1.05270 1.10420 1.68318 1.21717 0.93364 0.87458 0.98645 1.22383 0.98449 1.00703 0.96269 1.20468 0.92415 0.91213 0.89004 0.93545 1.20848 0.96909 0.99194 0.95919 0.91477 1.22385 0.99051 0.99626 0.94805 1.21579 0.93829 0.90292 0.94913 1.45040 1.56964 1.23465 1.07560 1.19834 1.22180 1.02895 1.01584 0.90219 1.25481 0.96535 1.00547 0.98576 1.70891 1.04051 1.43088 1.35813 0.84149 0.75705 0.75548 0.76929 1.22377 1.22925 1.22202 1.21147 0.95839 0.84833 0.98721 0.87592 0.92520 0.92549 0.83740 0.90254 0.91057 0.90421 0.81755 0.91526 0.89335 0.91119 0.91653 0.92076 0.91283 0.94767 0.95239 0.92453 0.86256 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.27 -3.50 8.58 -40.50 -0.35 -3.85 16 3 C 0.14 1.76 6.71 -38.55 -0.26 1.50 16 4 C -0.18 -1.54 8.81 -39.14 -0.34 -1.88 16 5 C -0.07 -0.56 5.90 -104.41 -0.62 -1.17 16 6 C -0.12 -0.46 10.03 36.00 0.36 -0.10 16 7 C 0.05 0.46 10.85 -17.55 -0.19 0.26 16 8 N -0.40 -4.93 6.12 -9.71 -0.06 -4.99 16 9 C 0.04 0.58 6.56 -82.88 -0.54 0.03 16 10 C 0.57 9.72 7.64 -12.34 -0.09 9.63 16 11 O -0.52 -10.25 14.56 -16.54 -0.24 -10.49 16 12 N -0.58 -9.60 2.99 -177.76 -0.53 -10.13 16 13 C 0.11 1.84 6.44 -3.88 -0.03 1.82 16 14 C -0.14 -2.70 5.18 -26.73 -0.14 -2.83 16 15 C 0.18 3.61 3.41 -67.70 -0.23 3.38 16 16 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.11 -1.85 2.45 -92.87 -0.23 -2.08 16 18 H 0.07 1.07 8.05 -51.93 -0.42 0.66 16 19 C -0.12 -2.15 6.37 -25.76 -0.16 -2.31 16 20 C 0.12 2.71 5.41 -3.07 -0.02 2.69 16 21 N -0.60 -15.11 3.02 -163.99 -0.50 -15.60 16 22 C -0.34 -9.76 9.90 -15.06 -0.15 -9.91 16 23 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 24 C -0.01 -0.27 5.38 -17.43 -0.09 -0.36 16 25 N -0.90 -28.31 13.70 55.49 0.76 -27.55 16 26 Si 1.04 27.30 24.95 -169.99 -4.24 23.06 16 27 H -0.30 -7.38 7.08 56.52 0.40 -6.98 16 28 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 29 H -0.29 -7.48 6.67 56.52 0.38 -7.10 16 30 C 0.12 1.75 4.94 -6.54 -0.03 1.72 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 33 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 34 H 0.14 0.81 6.46 -52.49 -0.34 0.47 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 37 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 38 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.51 6.99 -51.93 -0.36 1.15 16 41 H 0.07 1.44 8.12 -51.93 -0.42 1.02 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.03 0.84 3.06 -51.92 -0.16 0.68 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 48 H 0.12 1.71 4.42 -60.50 -0.27 1.44 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -35.95 377.39 -8.68 -44.63 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.44 Total: -2.26 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.77 Total: 1.50 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.33 Total: -58.28 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.59 Total: -14.34 kcal Atomic # 14 Polarization: 27.30 SS G_CDS: -4.24 Total: 23.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.95 -8.68 -44.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036738380.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.237 kcal (2) G-P(sol) polarization free energy of solvation -35.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 25.79 seconds