Wall clock time and date at job start Wed Apr 1 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35649 * 117.00261 * 2 1 4 4 C 1.39346 * 120.53968 * 0.27111 * 3 2 1 5 5 C 1.38306 * 118.43571 * 180.26143 * 4 3 2 6 6 C 1.50692 * 120.27436 * 179.75152 * 5 4 3 7 7 C 1.38763 * 119.44660 * 359.72994 * 5 4 3 8 8 N 1.31380 * 121.06884 * 0.02562 * 7 5 4 9 9 C 1.32865 * 121.69429 * 359.97438 * 8 7 5 10 10 C 1.47826 * 119.78127 * 180.02562 * 9 8 7 11 11 O 1.21558 * 119.99873 * 186.68484 * 10 9 8 12 12 N 1.34773 * 120.00052 * 6.68425 * 10 9 8 13 13 C 1.46831 * 120.30402 * 186.50390 * 12 10 9 14 14 C 1.52960 * 107.39816 * 235.00797 * 13 12 10 15 15 C 1.53046 * 109.99907 * 298.54066 * 14 13 12 16 16 H 1.08998 * 110.62027 * 289.28472 * 15 14 13 17 17 C 1.51774 * 112.25458 * 52.95437 * 15 14 13 18 18 H 1.08998 * 105.74986 * 207.28224 * 17 15 14 19 19 C 1.53394 * 105.82121 * 95.44044 * 17 15 14 20 20 C 1.54467 * 102.53326 * 29.54007 * 19 17 15 21 21 N 1.46872 * 106.66380 * 332.27403 * 20 19 17 22 22 C 1.36938 * 125.33888 * 195.32970 * 21 20 19 23 23 H 1.08000 * 120.00245 * 176.97798 * 22 21 20 24 24 C 1.38819 * 119.99581 * 356.98210 * 22 21 20 25 25 N 1.31624 * 119.99505 * 217.75939 * 24 22 21 26 26 Si 1.86791 * 120.00265 * 37.75647 * 24 22 21 27 27 H 1.48505 * 109.47304 * 267.30668 * 26 24 22 28 28 H 1.48504 * 109.47162 * 147.30869 * 26 24 22 29 29 H 1.48498 * 109.47489 * 27.30618 * 26 24 22 30 30 C 1.45258 * 120.15521 * 6.74039 * 12 10 9 31 31 H 1.08998 * 109.47355 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47122 * 300.00429 * 1 2 3 33 33 H 1.08997 * 109.47178 * 59.99989 * 1 2 3 34 34 H 1.07997 * 120.77793 * 0.02562 * 4 3 2 35 35 H 1.09003 * 109.47185 * 269.97915 * 6 5 4 36 36 H 1.09004 * 109.47734 * 29.97457 * 6 5 4 37 37 H 1.08996 * 109.47341 * 149.98226 * 6 5 4 38 38 H 1.08000 * 119.46481 * 179.97438 * 7 5 4 39 39 H 1.08993 * 109.87210 * 115.53397 * 13 12 10 40 40 H 1.09003 * 109.92523 * 354.50881 * 13 12 10 41 41 H 1.09004 * 109.38427 * 178.37973 * 14 13 12 42 42 H 1.08999 * 109.38854 * 58.70438 * 14 13 12 43 43 H 1.09005 * 110.79291 * 271.28554 * 19 17 15 44 44 H 1.08998 * 110.79908 * 147.80174 * 19 17 15 45 45 H 1.09007 * 110.02030 * 212.97760 * 20 19 17 46 46 H 1.09000 * 110.06057 * 91.59763 * 20 19 17 47 47 H 0.96999 * 120.00350 * 4.99756 * 25 24 22 48 48 H 1.08996 * 108.84685 * 21.99820 * 30 12 10 49 49 H 1.09001 * 107.99320 * 264.71334 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3844 0.0057 5 6 1.9698 3.5928 -0.0001 6 6 1.2022 4.8896 0.0000 7 6 3.3574 3.6011 -0.0056 8 7 4.0421 2.4798 -0.0059 9 6 3.4410 1.2949 -0.0005 10 6 4.2531 0.0596 -0.0005 11 8 3.7129 -1.0229 -0.1181 12 7 5.5925 0.1337 0.1299 13 6 6.4185 -1.0720 -0.0115 14 6 7.2613 -1.2004 1.2585 15 6 8.1767 0.0174 1.4046 16 1 8.9672 -0.0043 0.6545 17 6 7.4106 1.3252 1.3243 18 1 8.1210 2.0616 0.9486 19 6 7.1214 1.7302 2.7753 20 6 8.3169 1.1186 3.5386 21 7 8.7590 -0.0480 2.7637 22 6 9.5854 -1.0381 3.2245 23 1 9.8171 -1.8846 2.5951 24 6 10.1251 -0.9536 4.5007 25 7 11.3588 -1.3558 4.7213 26 14 9.1007 -0.2690 5.9046 27 1 9.3498 1.1893 6.0340 28 1 9.4771 -0.9495 7.1697 29 1 7.6608 -0.5023 5.6264 30 6 6.2283 1.4079 0.4167 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2175 2.3527 0.0106 35 1 1.0131 5.2000 -1.0276 36 1 0.2532 4.7502 0.5179 37 1 1.7851 5.6567 0.5098 38 1 3.8830 4.5445 -0.0106 39 1 7.0696 -0.9752 -0.8801 40 1 5.7802 -1.9486 -0.1227 41 1 7.8681 -2.1041 1.2001 42 1 6.6030 -1.2641 2.1248 43 1 6.1814 1.2975 3.1178 44 1 7.1100 2.8152 2.8793 45 1 8.0036 0.8076 4.5353 46 1 9.1253 1.8461 3.6119 47 1 11.9151 -1.6432 3.9805 48 1 5.4934 2.0746 0.8677 49 1 6.5496 1.8443 -0.5291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036738380.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:35 Heat of formation + Delta-G solvation = 0.996640 kcal Electronic energy + Delta-G solvation = -31579.091855 eV Core-core repulsion = 27507.599771 eV Total energy + Delta-G solvation = -4071.492084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.25487 -41.06596 -39.61390 -39.30819 -36.86650 -34.93896 -34.71603 -33.29592 -32.08200 -31.84769 -29.93657 -29.01465 -28.20941 -26.74175 -25.06300 -24.44828 -24.16353 -23.14599 -22.52259 -21.56709 -19.85812 -19.47734 -18.76242 -18.55619 -17.98204 -17.27191 -17.14949 -16.79569 -16.59129 -16.23358 -16.19167 -15.63557 -15.07421 -15.06441 -14.92995 -14.79618 -14.67597 -14.41725 -14.30871 -13.96820 -13.68834 -13.54299 -13.52189 -13.29070 -13.08022 -12.95411 -12.83492 -12.53003 -12.39853 -12.36497 -12.26134 -12.01572 -11.86042 -11.51986 -11.41310 -11.20644 -10.89125 -10.52178 -10.43789 -10.13763 -9.71210 -9.36372 -9.12308 -8.69079 -5.28287 -0.39769 0.20697 1.37184 1.48728 1.67258 1.69729 1.93432 2.19575 2.52654 2.74249 2.88899 3.09522 3.35416 3.52294 3.64101 3.66246 3.85861 3.88249 3.92724 4.03825 4.09765 4.13425 4.22854 4.30814 4.33180 4.35925 4.43981 4.52085 4.58634 4.62466 4.72504 4.73705 4.78417 4.84074 4.88512 4.89586 4.97311 5.03443 5.05858 5.21494 5.23589 5.25772 5.36333 5.46147 5.51805 5.65580 5.69303 6.13047 6.19898 6.38726 6.71346 6.84968 7.13552 7.54032 8.20281 8.80391 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003129 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.838533 B = 8947.420565 C = 9485.505792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.310 6.310 3 C 0.131 3.869 4 C -0.176 4.176 5 C -0.056 4.056 6 C -0.114 4.114 7 C 0.051 3.949 8 N -0.419 5.419 9 C -0.003 4.003 10 C 0.562 3.438 11 O -0.564 6.564 12 N -0.589 5.589 13 C 0.121 3.879 14 C -0.125 4.125 15 C 0.170 3.830 16 H 0.042 0.958 17 C -0.101 4.101 18 H 0.086 0.914 19 C -0.107 4.107 20 C 0.107 3.893 21 N -0.625 5.625 22 C -0.327 4.327 23 H 0.051 0.949 24 C -0.064 4.064 25 N -0.935 5.935 26 Si 1.091 2.909 27 H -0.273 1.273 28 H -0.306 1.306 29 H -0.288 1.288 30 C 0.124 3.876 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.175 0.825 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.199 0.801 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.056 0.944 44 H 0.112 0.888 45 H 0.021 0.979 46 H 0.028 0.972 47 H 0.253 0.747 48 H 0.135 0.865 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.051 17.763 -13.562 35.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.221 6.221 3 C 0.080 3.920 4 C -0.202 4.202 5 C -0.059 4.059 6 C -0.171 4.171 7 C -0.111 4.111 8 N -0.131 5.131 9 C -0.138 4.138 10 C 0.351 3.649 11 O -0.443 6.443 12 N -0.320 5.320 13 C -0.002 4.002 14 C -0.165 4.165 15 C 0.064 3.936 16 H 0.060 0.940 17 C -0.121 4.121 18 H 0.105 0.895 19 C -0.145 4.145 20 C -0.018 4.018 21 N -0.351 5.351 22 C -0.455 4.455 23 H 0.069 0.931 24 C -0.261 4.261 25 N -0.577 5.577 26 Si 0.920 3.080 27 H -0.200 1.200 28 H -0.234 1.234 29 H -0.216 1.216 30 C 0.001 3.999 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.193 0.807 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.215 0.785 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.130 0.870 45 H 0.039 0.961 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.152 0.848 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.253 17.154 -11.998 33.577 hybrid contribution -0.249 -1.412 -1.332 1.957 sum -26.502 15.742 -13.330 33.584 Atomic orbital electron populations 1.23504 0.76175 1.05769 1.02954 1.86381 1.23580 1.25670 1.86473 1.20207 0.91944 0.86677 0.93184 1.21973 1.02255 0.90211 1.05752 1.21447 0.95088 0.96875 0.92449 1.20950 1.00206 0.91523 1.04395 1.23438 0.91694 0.96859 0.99113 1.67840 1.38635 0.97555 1.09071 1.20288 0.89151 0.92455 1.11902 1.18170 0.81892 0.88051 0.76791 1.90759 1.71749 1.29658 1.52157 1.47585 1.05416 1.10500 1.68502 1.21525 0.93107 0.88078 0.97536 1.22162 0.97852 0.99690 0.96782 1.20695 0.92681 0.93592 0.86677 0.93989 1.20834 0.97957 0.97029 0.96259 0.89541 1.22375 0.96310 1.01809 0.94009 1.21775 0.95742 0.89420 0.94845 1.45173 1.56994 1.23180 1.09730 1.19726 1.21871 1.02803 1.01067 0.93143 1.26580 0.96805 1.01727 1.00999 1.70983 1.05155 1.46222 1.35308 0.83450 0.74358 0.76258 0.73900 1.19957 1.23426 1.21554 1.21252 0.95085 0.84331 0.99207 0.87189 0.90737 0.90457 0.80733 0.88693 0.89769 0.88889 0.78457 0.89499 0.90265 0.93147 0.94474 0.92554 0.87014 0.96105 0.95456 0.93776 0.84796 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.25 16 2 O -0.31 -7.93 8.58 -68.74 -0.59 -8.52 16 3 C 0.13 3.04 6.71 22.94 0.15 3.20 16 4 C -0.18 -2.39 8.81 22.55 0.20 -2.19 16 5 C -0.06 -0.58 5.90 -19.73 -0.12 -0.70 16 6 C -0.11 -0.26 10.03 71.23 0.71 0.46 16 7 C 0.05 0.68 10.85 84.89 0.92 1.61 16 8 N -0.42 -9.05 6.12 -184.63 -1.13 -10.18 16 9 C 0.00 -0.08 6.56 41.93 0.28 0.20 16 10 C 0.56 19.44 7.64 86.78 0.66 20.10 16 11 O -0.56 -23.03 14.56 17.00 0.25 -22.79 16 12 N -0.59 -19.18 2.99 -834.59 -2.50 -21.67 16 13 C 0.12 4.11 6.44 86.30 0.56 4.66 16 14 C -0.12 -5.08 5.18 30.60 0.16 -4.92 16 15 C 0.17 6.97 3.41 44.31 0.15 7.12 16 16 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.10 -3.22 2.45 -12.25 -0.03 -3.25 16 18 H 0.09 2.46 8.05 -2.39 -0.02 2.44 16 19 C -0.11 -3.52 6.37 31.22 0.20 -3.33 16 20 C 0.11 4.73 5.41 86.81 0.47 5.20 16 21 N -0.62 -31.64 3.02 -672.75 -2.03 -33.68 16 22 C -0.33 -19.55 9.90 84.03 0.83 -18.72 16 23 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 24 C -0.06 -3.96 5.38 84.86 0.46 -3.51 16 25 N -0.94 -61.01 13.70 21.65 0.30 -60.71 16 26 Si 1.09 56.32 24.95 68.60 1.71 58.03 16 27 H -0.27 -12.97 7.08 99.48 0.70 -12.26 16 28 H -0.31 -15.86 7.11 99.48 0.71 -15.16 16 29 H -0.29 -14.37 6.67 99.48 0.66 -13.71 16 30 C 0.12 3.40 4.94 85.42 0.42 3.82 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 0.66 7.68 -2.39 -0.02 0.64 16 33 H 0.08 0.63 7.71 -2.39 -0.02 0.61 16 34 H 0.18 1.17 6.46 -2.91 -0.02 1.15 16 35 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.08 0.05 8.09 -2.38 -0.02 0.03 16 37 H 0.09 0.01 8.09 -2.39 -0.02 -0.01 16 38 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.08 2.85 6.99 -2.39 -0.02 2.84 16 41 H 0.05 2.19 8.12 -2.38 -0.02 2.18 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.02 1.01 3.06 -2.38 -0.01 1.00 16 46 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.25 16.53 8.73 -92.71 -0.81 15.72 16 48 H 0.14 3.42 4.42 -19.31 -0.09 3.34 16 49 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -84.33 377.39 3.95 -80.38 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.80 Total: 8.13 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 7.14 Total: 11.00 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -5.36 Total: -126.24 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.34 Total: -31.31 kcal Atomic # 14 Polarization: 56.32 SS G_CDS: 1.71 Total: 58.03 kcal Total: -84.33 3.95 -80.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036738380.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.377 kcal (2) G-P(sol) polarization free energy of solvation -84.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds