Wall clock time and date at job start Wed Apr 1 2020 05:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36400 * 120.34844 * 2 1 4 4 C 1.40197 * 119.26081 * 179.97438 * 3 2 1 5 5 C 1.35346 * 119.95379 * 359.75113 * 4 3 2 6 6 N 1.35763 * 120.69630 * 0.53251 * 5 4 3 7 7 C 1.46499 * 119.62353 * 179.72085 * 6 5 4 8 8 C 1.50705 * 109.46781 * 269.72556 * 7 6 5 9 9 O 1.21275 * 120.00084 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99629 * 179.97438 * 8 7 6 11 11 C 1.47153 * 125.60249 * 359.97438 * 10 8 7 12 12 C 1.54626 * 107.34336 * 179.10837 * 11 10 8 13 13 C 1.53475 * 102.74625 * 339.33914 * 12 11 10 14 14 C 1.53500 * 111.81030 * 272.83199 * 13 12 11 15 15 C 1.55220 * 101.38820 * 271.72045 * 14 13 12 16 16 N 1.47572 * 105.03028 * 324.67625 * 15 14 13 17 17 C 1.36940 * 125.67572 * 203.81222 * 16 15 14 18 18 H 1.08001 * 120.00052 * 170.09697 * 17 16 15 19 19 C 1.38813 * 119.99745 * 350.10000 * 17 16 15 20 20 N 1.31618 * 120.00328 * 350.38123 * 19 17 16 21 21 Si 1.86800 * 119.99726 * 170.38504 * 19 17 16 22 22 H 1.48499 * 109.47138 * 94.14041 * 21 19 17 23 23 H 1.48498 * 109.46936 * 214.14025 * 21 19 17 24 24 H 1.48502 * 109.47186 * 334.13932 * 21 19 17 25 25 C 1.47455 * 108.64857 * 23.82668 * 16 15 14 26 26 C 1.47763 * 125.59666 * 179.97438 * 10 8 7 27 27 C 1.34657 * 120.75455 * 359.43697 * 6 5 4 28 28 O 1.22058 * 119.98873 * 180.27925 * 27 6 5 29 29 H 1.09000 * 109.47561 * 270.02087 * 1 2 3 30 30 H 1.09007 * 109.47127 * 30.01570 * 1 2 3 31 31 H 1.09004 * 109.47507 * 150.01924 * 1 2 3 32 32 H 1.08001 * 120.36612 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.01700 * 180.02562 * 4 3 2 34 34 H 1.07991 * 119.65149 * 180.24658 * 5 4 3 35 35 H 1.08999 * 109.47598 * 149.72729 * 7 6 5 36 36 H 1.08999 * 109.47178 * 29.72224 * 7 6 5 37 37 H 1.09004 * 109.86798 * 298.54228 * 11 10 8 38 38 H 1.08994 * 109.87281 * 59.66511 * 11 10 8 39 39 H 1.09001 * 110.75840 * 97.65361 * 12 11 10 40 40 H 1.09001 * 110.76065 * 221.02405 * 12 11 10 41 41 H 1.08995 * 111.04019 * 29.74902 * 14 13 12 42 42 H 1.08994 * 111.03878 * 153.70131 * 14 13 12 43 43 H 1.08998 * 110.32784 * 205.77981 * 15 14 13 44 44 H 1.09008 * 110.41537 * 83.60490 * 15 14 13 45 45 H 0.96996 * 120.00536 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.99515 * 238.44685 * 25 16 15 47 47 H 1.09002 * 110.02365 * 117.13391 * 25 16 15 48 48 H 1.08995 * 110.39413 * 321.11655 * 26 10 8 49 49 H 1.08995 * 110.39620 * 83.52340 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1505 0.0005 5 6 4.2513 -0.0348 0.0062 6 7 3.5635 -1.2053 0.0004 7 6 4.2947 -2.4748 0.0005 8 6 4.5455 -2.9101 -1.4203 9 8 4.1519 -2.2274 -2.3421 10 7 5.2074 -4.0580 -1.6665 11 6 5.7377 -4.9768 -0.6467 12 6 6.3944 -6.1623 -1.3911 13 6 5.7348 -6.1001 -2.7755 14 6 4.4144 -6.8819 -2.8137 15 6 4.9105 -8.3029 -3.1933 16 7 6.0426 -8.0800 -4.1133 17 6 6.4998 -8.9707 -5.0475 18 1 7.2286 -8.6580 -5.7806 19 6 6.0264 -10.2757 -5.0523 20 7 5.2881 -10.7116 -4.0537 21 14 6.4375 -11.4131 -6.4759 22 1 7.6456 -12.2089 -6.1408 23 1 5.2948 -12.3285 -6.7240 24 1 6.6988 -10.6060 -7.6948 25 6 6.5997 -6.7386 -3.8591 26 6 5.5195 -4.6008 -3.0050 27 6 2.2170 -1.2128 0.0005 28 8 1.6128 -2.2734 0.0004 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8899 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6679 2.1191 0.0004 33 1 4.1558 2.0752 0.0010 34 1 5.3311 -0.0496 0.0106 35 1 3.7049 -3.2339 0.5143 36 1 5.2472 -2.3455 0.5144 37 1 6.4820 -4.4640 -0.0373 38 1 4.9258 -5.3391 -0.0163 39 1 7.4722 -6.0197 -1.4700 40 1 6.1638 -7.1053 -0.8954 41 1 3.9323 -6.8839 -1.8362 42 1 3.7460 -6.4841 -3.5772 43 1 4.1186 -8.8591 -3.6948 44 1 5.2446 -8.8389 -2.3048 45 1 4.9576 -11.6235 -4.0568 46 1 6.5596 -6.1398 -4.7690 47 1 7.6299 -6.8218 -3.5129 48 1 4.6842 -4.4367 -3.6857 49 1 6.4270 -4.1428 -3.3984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041284926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:22 Heat of formation + Delta-G solvation = 1.156324 kcal Electronic energy + Delta-G solvation = -30533.293615 eV Core-core repulsion = 26461.808456 eV Total energy + Delta-G solvation = -4071.485160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.76710 -40.26873 -38.48101 -37.08559 -35.79362 -35.34012 -32.78521 -31.52444 -30.62445 -29.48272 -28.93072 -28.24212 -27.42447 -25.55425 -23.93419 -22.90612 -22.81583 -22.70205 -20.33770 -19.66933 -18.91022 -17.77615 -17.61750 -17.33550 -16.78831 -16.38355 -15.99162 -15.77330 -15.05259 -14.82963 -14.63306 -14.48316 -14.07429 -13.99685 -13.89178 -13.28282 -13.17361 -12.98157 -12.88845 -12.72174 -12.56637 -12.47218 -12.27843 -12.12714 -11.88232 -11.78299 -11.57607 -11.37056 -11.21424 -10.86355 -10.77994 -10.53139 -10.31521 -10.14125 -10.06808 -10.00335 -9.80335 -9.78472 -9.66000 -8.69780 -8.58711 -8.08196 -6.81897 -5.75896 -3.08219 0.56446 1.67883 2.16892 2.40877 2.89744 3.38920 3.44338 3.45215 3.47163 4.18864 4.24163 4.27858 4.48272 4.54705 4.61816 4.72907 4.81010 4.86322 4.90432 4.98888 4.99517 5.20955 5.31486 5.36766 5.42953 5.48137 5.50023 5.56933 5.74634 5.81610 5.82121 5.90043 5.92338 5.95796 6.03105 6.11487 6.14791 6.23530 6.26922 6.30202 6.50748 6.58469 6.70555 6.80074 6.80481 7.37709 7.49057 7.56191 7.77369 7.82696 7.96226 8.24141 9.17907 9.79622 10.47281 11.37265 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.002145 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.095358 B =13052.162695 C =13413.413964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.207 4.207 3 C -0.024 4.024 4 C -0.227 4.227 5 C 0.135 3.865 6 N -0.480 5.480 7 C 0.076 3.924 8 C 0.516 3.484 9 O -0.531 6.531 10 N -0.610 5.610 11 C 0.096 3.904 12 C -0.112 4.112 13 C -0.081 4.081 14 C -0.131 4.131 15 C 0.176 3.824 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.153 3.847 26 C 0.125 3.875 27 C 0.523 3.477 28 O -0.544 6.544 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.253 0.747 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.079 0.921 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 23.708 14.070 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.211 4.211 3 C -0.046 4.046 4 C -0.250 4.250 5 C 0.008 3.992 6 N -0.190 5.190 7 C -0.050 4.050 8 C 0.302 3.698 9 O -0.408 6.408 10 N -0.344 5.344 11 C -0.027 4.027 12 C -0.150 4.150 13 C -0.082 4.082 14 C -0.170 4.170 15 C 0.051 3.949 16 N -0.329 5.329 17 C -0.357 4.357 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.026 3.974 26 C 0.003 3.997 27 C 0.324 3.676 28 O -0.425 6.425 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.098 0.902 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.319 23.194 13.533 26.886 hybrid contribution 0.466 -0.643 -0.697 1.056 sum -0.853 22.551 12.837 25.963 Atomic orbital electron populations 1.20446 0.89078 1.03052 1.02206 1.20787 0.97901 0.91889 1.10499 1.21307 0.93897 0.98043 0.91346 1.20580 0.94649 0.97151 1.12667 1.21871 0.98336 0.84784 0.94172 1.45005 1.08019 1.06426 1.59540 1.21775 0.99331 0.87432 0.96445 1.20210 0.78019 0.80570 0.91001 1.90754 1.50639 1.53545 1.45839 1.48573 1.55415 1.21258 1.09188 1.22280 0.98094 0.91097 0.91199 1.22461 0.99823 0.97483 0.95196 1.21539 0.98122 0.92831 0.95722 1.22823 0.94551 0.99133 1.00448 1.21459 0.90547 0.89880 0.93036 1.44590 1.34013 1.12644 1.41626 1.19008 1.21252 0.89874 1.05588 0.90642 1.24815 1.00752 0.96672 0.98142 1.69950 1.39890 1.16395 1.30262 0.86137 0.77336 0.80623 0.81861 1.21635 1.21617 1.20605 1.20965 0.94493 0.87982 0.93934 1.22101 1.01001 0.92826 0.83763 1.16937 0.80361 0.91296 0.78997 1.90960 1.66370 1.32751 1.52432 0.91429 0.91525 0.90810 0.84901 0.83731 0.82362 0.85242 0.86187 0.91358 0.91085 0.90372 0.89171 0.92131 0.92026 0.91460 0.95453 0.93704 0.95539 0.95517 0.90237 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.81 36.00 0.35 -0.53 16 2 C -0.21 -2.32 5.90 -104.42 -0.62 -2.93 16 3 C -0.02 -0.20 9.75 -39.51 -0.39 -0.58 16 4 C -0.23 -1.57 10.01 -39.88 -0.40 -1.97 16 5 C 0.13 1.05 10.28 -16.84 -0.17 0.87 16 6 N -0.48 -5.29 2.07 -121.07 -0.25 -5.54 16 7 C 0.08 0.75 5.00 -5.19 -0.03 0.72 16 8 C 0.52 7.10 7.92 -10.98 -0.09 7.02 16 9 O -0.53 -9.53 16.71 5.56 0.09 -9.44 16 10 N -0.61 -7.96 3.34 -171.02 -0.57 -8.53 16 11 C 0.10 0.99 6.43 -2.83 -0.02 0.97 16 12 C -0.11 -1.45 5.81 -25.63 -0.15 -1.60 16 13 C -0.08 -1.31 0.62 -154.09 -0.10 -1.41 16 14 C -0.13 -2.44 5.97 -25.30 -0.15 -2.59 16 15 C 0.18 4.15 5.36 -2.28 -0.01 4.14 16 16 N -0.60 -15.07 3.41 -170.43 -0.58 -15.66 16 17 C -0.23 -6.33 10.24 -15.06 -0.15 -6.48 16 18 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 19 C -0.01 -0.20 5.40 -17.43 -0.09 -0.30 16 20 N -0.92 -26.78 10.68 55.49 0.59 -26.19 16 21 Si 0.91 22.02 29.56 -169.99 -5.03 17.00 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.15 3.03 6.51 -3.70 -0.02 3.01 16 26 C 0.13 1.87 5.80 -3.25 -0.02 1.85 16 27 C 0.52 7.27 7.39 -15.45 -0.11 7.16 16 28 O -0.54 -9.52 15.76 4.87 0.08 -9.45 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.09 -51.92 -0.42 0.07 16 31 H 0.07 0.87 7.62 -51.93 -0.40 0.47 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.16 0.68 8.03 -52.49 -0.42 0.25 16 35 H 0.13 1.32 7.39 -51.93 -0.38 0.94 16 36 H 0.12 0.63 8.01 -51.93 -0.42 0.22 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.94 7.78 -51.93 -0.40 0.54 16 40 H 0.09 1.25 7.96 -51.93 -0.41 0.83 16 41 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 42 H 0.06 1.20 7.86 -51.93 -0.41 0.79 16 43 H 0.07 1.81 6.95 -51.93 -0.36 1.45 16 44 H 0.03 0.69 8.06 -51.92 -0.42 0.27 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.03 0.53 7.89 -51.93 -0.41 0.12 16 47 H 0.03 0.52 7.61 -51.93 -0.39 0.13 16 48 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 49 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -36.86 394.81 -9.62 -46.48 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.74 Total: -1.98 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -2.16 Total: 7.35 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.81 Total: -55.91 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.17 Total: -18.89 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.86 -9.62 -46.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041284926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.637 kcal (2) G-P(sol) polarization free energy of solvation -36.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds