Wall clock time and date at job start Wed Apr 1 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36400 * 120.34844 * 2 1 4 4 C 1.40197 * 119.26081 * 179.97438 * 3 2 1 5 5 C 1.35346 * 119.95379 * 359.75113 * 4 3 2 6 6 N 1.35763 * 120.69630 * 0.53251 * 5 4 3 7 7 C 1.46499 * 119.62353 * 179.72085 * 6 5 4 8 8 C 1.50705 * 109.46781 * 269.72556 * 7 6 5 9 9 O 1.21275 * 120.00084 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99629 * 179.97438 * 8 7 6 11 11 C 1.47153 * 125.60249 * 359.97438 * 10 8 7 12 12 C 1.54626 * 107.34336 * 179.10837 * 11 10 8 13 13 C 1.53475 * 102.74625 * 339.33914 * 12 11 10 14 14 C 1.53500 * 111.81030 * 272.83199 * 13 12 11 15 15 C 1.55220 * 101.38820 * 271.72045 * 14 13 12 16 16 N 1.47572 * 105.03028 * 324.67625 * 15 14 13 17 17 C 1.36940 * 125.67572 * 203.81222 * 16 15 14 18 18 H 1.08001 * 120.00052 * 170.09697 * 17 16 15 19 19 C 1.38813 * 119.99745 * 350.10000 * 17 16 15 20 20 N 1.31618 * 120.00328 * 350.38123 * 19 17 16 21 21 Si 1.86800 * 119.99726 * 170.38504 * 19 17 16 22 22 H 1.48499 * 109.47138 * 94.14041 * 21 19 17 23 23 H 1.48498 * 109.46936 * 214.14025 * 21 19 17 24 24 H 1.48502 * 109.47186 * 334.13932 * 21 19 17 25 25 C 1.47455 * 108.64857 * 23.82668 * 16 15 14 26 26 C 1.47763 * 125.59666 * 179.97438 * 10 8 7 27 27 C 1.34657 * 120.75455 * 359.43697 * 6 5 4 28 28 O 1.22058 * 119.98873 * 180.27925 * 27 6 5 29 29 H 1.09000 * 109.47561 * 270.02087 * 1 2 3 30 30 H 1.09007 * 109.47127 * 30.01570 * 1 2 3 31 31 H 1.09004 * 109.47507 * 150.01924 * 1 2 3 32 32 H 1.08001 * 120.36612 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.01700 * 180.02562 * 4 3 2 34 34 H 1.07991 * 119.65149 * 180.24658 * 5 4 3 35 35 H 1.08999 * 109.47598 * 149.72729 * 7 6 5 36 36 H 1.08999 * 109.47178 * 29.72224 * 7 6 5 37 37 H 1.09004 * 109.86798 * 298.54228 * 11 10 8 38 38 H 1.08994 * 109.87281 * 59.66511 * 11 10 8 39 39 H 1.09001 * 110.75840 * 97.65361 * 12 11 10 40 40 H 1.09001 * 110.76065 * 221.02405 * 12 11 10 41 41 H 1.08995 * 111.04019 * 29.74902 * 14 13 12 42 42 H 1.08994 * 111.03878 * 153.70131 * 14 13 12 43 43 H 1.08998 * 110.32784 * 205.77981 * 15 14 13 44 44 H 1.09008 * 110.41537 * 83.60490 * 15 14 13 45 45 H 0.96996 * 120.00536 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.99515 * 238.44685 * 25 16 15 47 47 H 1.09002 * 110.02365 * 117.13391 * 25 16 15 48 48 H 1.08995 * 110.39413 * 321.11655 * 26 10 8 49 49 H 1.08995 * 110.39620 * 83.52340 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1505 0.0005 5 6 4.2513 -0.0348 0.0062 6 7 3.5635 -1.2053 0.0004 7 6 4.2947 -2.4748 0.0005 8 6 4.5455 -2.9101 -1.4203 9 8 4.1519 -2.2274 -2.3421 10 7 5.2074 -4.0580 -1.6665 11 6 5.7377 -4.9768 -0.6467 12 6 6.3944 -6.1623 -1.3911 13 6 5.7348 -6.1001 -2.7755 14 6 4.4144 -6.8819 -2.8137 15 6 4.9105 -8.3029 -3.1933 16 7 6.0426 -8.0800 -4.1133 17 6 6.4998 -8.9707 -5.0475 18 1 7.2286 -8.6580 -5.7806 19 6 6.0264 -10.2757 -5.0523 20 7 5.2881 -10.7116 -4.0537 21 14 6.4375 -11.4131 -6.4759 22 1 7.6456 -12.2089 -6.1408 23 1 5.2948 -12.3285 -6.7240 24 1 6.6988 -10.6060 -7.6948 25 6 6.5997 -6.7386 -3.8591 26 6 5.5195 -4.6008 -3.0050 27 6 2.2170 -1.2128 0.0005 28 8 1.6128 -2.2734 0.0004 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8899 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6679 2.1191 0.0004 33 1 4.1558 2.0752 0.0010 34 1 5.3311 -0.0496 0.0106 35 1 3.7049 -3.2339 0.5143 36 1 5.2472 -2.3455 0.5144 37 1 6.4820 -4.4640 -0.0373 38 1 4.9258 -5.3391 -0.0163 39 1 7.4722 -6.0197 -1.4700 40 1 6.1638 -7.1053 -0.8954 41 1 3.9323 -6.8839 -1.8362 42 1 3.7460 -6.4841 -3.5772 43 1 4.1186 -8.8591 -3.6948 44 1 5.2446 -8.8389 -2.3048 45 1 4.9576 -11.6235 -4.0568 46 1 6.5596 -6.1398 -4.7690 47 1 7.6299 -6.8218 -3.5129 48 1 4.6842 -4.4367 -3.6857 49 1 6.4270 -4.1428 -3.3984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041284926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:20 Heat of formation + Delta-G solvation = -22.893459 kcal Electronic energy + Delta-G solvation = -30534.336492 eV Core-core repulsion = 26461.808456 eV Total energy + Delta-G solvation = -4072.528036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.57349 -41.43368 -39.75381 -37.96852 -37.26355 -36.10252 -34.54472 -32.45610 -31.98873 -30.62481 -30.48881 -29.39798 -28.11917 -27.20630 -25.39939 -24.11785 -23.68870 -23.38850 -22.22092 -20.66700 -20.24408 -18.88130 -18.59031 -18.39732 -18.09865 -17.31231 -16.96783 -16.82338 -16.70764 -16.14862 -15.83505 -15.62575 -15.32624 -15.19793 -14.75299 -14.48532 -14.31213 -14.12747 -14.01573 -13.79869 -13.67302 -13.61954 -13.22349 -13.16407 -13.08927 -12.95033 -12.89394 -12.70331 -12.60753 -12.51088 -12.45052 -12.01850 -11.86362 -11.65531 -11.45845 -11.42032 -11.30902 -11.06078 -10.71595 -10.65306 -9.74808 -8.86912 -8.82609 -7.89518 -5.23268 -0.09964 0.95735 1.36316 1.43894 1.44656 1.46554 1.55770 1.97315 2.48387 2.67946 3.22203 3.33089 3.49122 3.58221 3.60992 3.68606 3.77150 3.81167 3.98034 4.11235 4.21695 4.21861 4.23181 4.26084 4.33156 4.38716 4.57358 4.58429 4.69181 4.73602 4.76872 4.79629 4.83877 4.88659 4.94612 5.00363 5.03071 5.18532 5.20107 5.24300 5.28310 5.35203 5.43853 5.45573 5.56794 5.68399 5.71229 6.06294 6.18432 6.37460 6.91019 6.99851 7.06728 7.74688 8.41618 9.22700 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.002145 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.095358 B =13052.162695 C =13413.413964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.254 4.254 3 C -0.002 4.002 4 C -0.225 4.225 5 C 0.127 3.873 6 N -0.483 5.483 7 C 0.079 3.921 8 C 0.512 3.488 9 O -0.582 6.582 10 N -0.608 5.608 11 C 0.099 3.901 12 C -0.108 4.108 13 C -0.072 4.072 14 C -0.116 4.116 15 C 0.185 3.815 16 N -0.625 5.625 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.065 4.065 20 N -0.948 5.948 21 Si 0.976 3.024 22 H -0.283 1.283 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.149 3.851 26 C 0.132 3.868 27 C 0.500 3.500 28 O -0.606 6.606 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.201 0.799 35 H 0.124 0.876 36 H 0.178 0.822 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.024 0.976 44 H 0.008 0.992 45 H 0.248 0.752 46 H 0.026 0.974 47 H 0.039 0.961 48 H 0.051 0.949 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 26.993 15.675 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.258 4.258 3 C -0.024 4.024 4 C -0.247 4.247 5 C 0.002 3.998 6 N -0.191 5.191 7 C -0.045 4.045 8 C 0.301 3.699 9 O -0.462 6.462 10 N -0.342 5.342 11 C -0.022 4.022 12 C -0.146 4.146 13 C -0.074 4.074 14 C -0.155 4.155 15 C 0.060 3.940 16 N -0.352 5.352 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.258 4.258 20 N -0.596 5.596 21 Si 0.804 3.196 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.195 1.195 25 C 0.024 3.976 26 C 0.009 3.991 27 C 0.304 3.696 28 O -0.493 6.493 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.183 0.817 33 H 0.202 0.798 34 H 0.218 0.782 35 H 0.142 0.858 36 H 0.195 0.805 37 H 0.135 0.865 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.026 0.974 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.382 26.526 15.163 30.585 hybrid contribution -0.276 -1.562 -1.234 2.010 sum 1.106 24.964 13.929 28.609 Atomic orbital electron populations 1.20401 0.89066 1.02423 1.02434 1.20929 0.98449 0.92262 1.14183 1.21768 0.94834 0.98066 0.87698 1.21160 0.94294 0.98537 1.10720 1.22712 1.00328 0.83854 0.92943 1.45088 1.07448 1.07957 1.58617 1.21968 1.01642 0.87155 0.93763 1.20916 0.76831 0.80011 0.92187 1.90729 1.52552 1.55191 1.47732 1.48612 1.55266 1.21435 1.08856 1.22471 0.99453 0.89890 0.90386 1.22458 1.00840 0.98517 0.92794 1.21386 0.95913 0.93084 0.96978 1.22622 0.95837 0.96258 1.00760 1.21188 0.89201 0.92077 0.91527 1.44883 1.34771 1.14094 1.41418 1.19393 1.20924 0.90560 1.06210 0.90235 1.25647 1.01242 0.98338 1.00609 1.70144 1.41188 1.16324 1.31989 0.85109 0.76813 0.78496 0.79173 1.20998 1.22203 1.19530 1.21143 0.95507 0.85711 0.95243 1.21846 1.00593 0.91823 0.84812 1.17460 0.81531 0.91483 0.79095 1.90904 1.67752 1.34576 1.56065 0.90897 0.89210 0.94223 0.81684 0.79821 0.78192 0.85795 0.80460 0.86459 0.90076 0.88590 0.90114 0.90262 0.93441 0.95770 0.97404 0.94327 0.95630 0.94336 0.93051 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 9.81 71.24 0.70 -1.04 16 2 C -0.25 -5.63 5.90 -19.73 -0.12 -5.74 16 3 C 0.00 -0.03 9.75 22.32 0.22 0.19 16 4 C -0.23 -2.12 10.01 22.08 0.22 -1.90 16 5 C 0.13 1.45 10.28 83.42 0.86 2.31 16 6 N -0.48 -9.68 2.07 -655.08 -1.36 -11.04 16 7 C 0.08 1.34 5.00 85.63 0.43 1.77 16 8 C 0.51 13.18 7.92 87.66 0.69 13.87 16 9 O -0.58 -20.71 16.71 -3.01 -0.05 -20.76 16 10 N -0.61 -14.41 3.34 -813.37 -2.72 -17.12 16 11 C 0.10 1.65 6.43 86.81 0.56 2.21 16 12 C -0.11 -2.52 5.81 31.31 0.18 -2.34 16 13 C -0.07 -2.29 0.62 -51.91 -0.03 -2.33 16 14 C -0.12 -4.44 5.97 31.52 0.19 -4.25 16 15 C 0.19 9.16 5.36 86.94 0.47 9.63 16 16 N -0.63 -32.08 3.41 -693.13 -2.37 -34.45 16 17 C -0.24 -13.63 10.24 84.03 0.86 -12.77 16 18 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 19 C -0.07 -3.73 5.40 84.86 0.46 -3.27 16 20 N -0.95 -57.45 10.68 21.65 0.23 -57.21 16 21 Si 0.98 46.18 29.56 68.60 2.03 48.20 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 C 0.15 5.88 6.51 86.08 0.56 6.44 16 26 C 0.13 3.81 5.80 86.20 0.50 4.31 16 27 C 0.50 14.12 7.39 84.82 0.63 14.75 16 28 O -0.61 -22.66 15.76 -5.50 -0.09 -22.75 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.27 8.09 -2.38 -0.02 1.25 16 31 H 0.04 1.04 7.62 -2.39 -0.02 1.02 16 32 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 34 H 0.20 0.49 8.03 -2.92 -0.02 0.46 16 35 H 0.12 2.32 7.39 -2.39 -0.02 2.30 16 36 H 0.18 0.83 8.01 -2.39 -0.02 0.81 16 37 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.94 7.78 -2.39 -0.02 1.92 16 40 H 0.08 2.08 7.96 -2.39 -0.02 2.06 16 41 H 0.08 2.71 7.97 -2.39 -0.02 2.69 16 42 H 0.05 1.93 7.86 -2.39 -0.02 1.91 16 43 H 0.02 1.37 6.95 -2.39 -0.02 1.36 16 44 H 0.01 0.42 8.06 -2.38 -0.02 0.40 16 45 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 46 H 0.03 1.02 7.89 -2.39 -0.02 1.00 16 47 H 0.04 1.45 7.61 -2.39 -0.02 1.43 16 48 H 0.05 1.78 7.75 -2.39 -0.02 1.76 16 49 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 Total: -1.00 -89.20 394.81 3.99 -85.21 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.94 Total: 8.08 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 7.37 Total: 21.84 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -6.21 Total: -119.83 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.14 Total: -43.51 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -89.20 3.99 -85.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041284926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.317 kcal (2) G-P(sol) polarization free energy of solvation -89.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds