Wall clock time and date at job start Wed Apr 1 2020 03:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35645 * 116.99565 * 2 1 4 4 C 1.39338 * 120.54643 * 359.73310 * 3 2 1 5 5 C 1.38308 * 118.44283 * 179.73090 * 4 3 2 6 6 C 1.50703 * 120.27719 * 180.26333 * 5 4 3 7 7 C 1.38768 * 119.44128 * 0.52039 * 5 4 3 8 8 N 1.31375 * 121.06874 * 359.74074 * 7 5 4 9 9 C 1.32857 * 121.69480 * 0.02562 * 8 7 5 10 10 C 1.47826 * 119.78114 * 179.97438 * 9 8 7 11 11 O 1.21559 * 120.00283 * 187.04999 * 10 9 8 12 12 N 1.34778 * 120.00288 * 7.05293 * 10 9 8 13 13 C 1.47154 * 121.20953 * 10.27002 * 12 10 9 14 14 C 1.53339 * 107.71598 * 122.69033 * 13 12 10 15 15 C 1.53093 * 110.49670 * 57.57065 * 14 13 12 16 16 H 1.08995 * 113.06281 * 70.86873 * 15 14 13 17 17 C 1.56027 * 106.39468 * 195.29149 * 15 14 13 18 18 C 1.54504 * 102.61359 * 78.38007 * 17 15 14 19 19 N 1.47436 * 107.14573 * 22.84539 * 18 17 15 20 20 C 1.36939 * 126.05806 * 181.59426 * 19 18 17 21 21 H 1.07999 * 119.99738 * 185.78256 * 20 19 18 22 22 C 1.38809 * 120.00080 * 5.77290 * 20 19 18 23 23 N 1.31618 * 120.00277 * 353.20056 * 22 20 19 24 24 Si 1.86799 * 119.99837 * 173.20093 * 22 20 19 25 25 H 1.48501 * 109.47279 * 94.99235 * 24 22 20 26 26 H 1.48502 * 109.47160 * 214.98733 * 24 22 20 27 27 H 1.48499 * 109.47208 * 334.98793 * 24 22 20 28 28 C 1.46468 * 107.88233 * 1.62558 * 19 18 17 29 29 H 1.08999 * 108.41740 * 89.23439 * 28 19 18 30 30 C 1.46755 * 121.21785 * 190.54867 * 12 10 9 31 31 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46934 * 299.99420 * 1 2 3 33 33 H 1.09000 * 109.47765 * 59.99343 * 1 2 3 34 34 H 1.08000 * 120.77859 * 359.97187 * 4 3 2 35 35 H 1.09005 * 109.46602 * 270.25707 * 6 5 4 36 36 H 1.09002 * 109.47124 * 30.25385 * 6 5 4 37 37 H 1.08998 * 109.46775 * 150.25728 * 6 5 4 38 38 H 1.08003 * 119.46167 * 179.72304 * 7 5 4 39 39 H 1.09008 * 109.75607 * 242.33594 * 13 12 10 40 40 H 1.08999 * 109.76330 * 3.09220 * 13 12 10 41 41 H 1.08997 * 109.39375 * 297.24404 * 14 13 12 42 42 H 1.09002 * 109.16114 * 177.74644 * 14 13 12 43 43 H 1.09000 * 110.77955 * 320.10214 * 17 15 14 44 44 H 1.08998 * 110.78546 * 196.66030 * 17 15 14 45 45 H 1.09003 * 109.90087 * 263.46621 * 18 17 15 46 46 H 1.08995 * 109.90587 * 142.22603 * 18 17 15 47 47 H 0.96999 * 120.00192 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.22479 * 352.83566 * 30 12 10 49 49 H 1.09002 * 109.22881 * 112.23394 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2969 2.3844 -0.0056 5 6 1.9695 3.5929 0.0004 6 6 1.2018 4.8897 0.0006 7 6 3.3572 3.6012 0.0006 8 7 4.0419 2.4800 0.0005 9 6 3.4410 1.2951 -0.0005 10 6 4.2531 0.0599 -0.0013 11 8 3.7142 -1.0218 -0.1314 12 7 5.5912 0.1331 0.1423 13 6 6.2495 1.3929 0.5232 14 6 7.0493 1.1325 1.8053 15 6 8.0613 0.0048 1.5861 16 1 8.8892 0.2941 0.9389 17 6 8.5298 -0.4482 3.0037 18 6 7.3544 -1.3298 3.4817 19 7 6.6434 -1.7967 2.2775 20 6 5.5202 -2.5798 2.2574 21 1 5.1319 -2.9429 1.3173 22 6 4.8809 -2.9069 3.4452 23 7 5.4255 -2.5792 4.5977 24 14 3.2475 -3.8124 3.4081 25 1 3.4869 -5.2714 3.5477 26 1 2.3948 -3.3414 4.5289 27 1 2.5621 -3.5444 2.1182 28 6 7.3519 -1.2752 1.1064 29 1 8.1188 -1.9946 0.8193 30 6 6.4454 -1.0391 -0.0813 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 0.2174 2.3527 -0.0105 35 1 1.0170 5.2027 -1.0270 36 1 0.2507 4.7488 0.5142 37 1 1.7825 5.6555 0.5149 38 1 3.8827 4.5447 0.0007 39 1 6.9201 1.7139 -0.2740 40 1 5.4979 2.1611 0.7050 41 1 6.3664 0.8518 2.6071 42 1 7.5799 2.0420 2.0870 43 1 8.6605 0.4115 3.6608 44 1 9.4488 -1.0307 2.9395 45 1 6.6807 -0.7431 4.1063 46 1 7.7349 -2.1835 4.0424 47 1 4.9786 -2.8075 5.4278 48 1 5.8176 -1.9169 -0.2337 49 1 7.0547 -0.8750 -0.9701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042099199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:18 Heat of formation + Delta-G solvation = 20.886456 kcal Electronic energy + Delta-G solvation = -32592.536126 eV Core-core repulsion = 28521.906529 eV Total energy + Delta-G solvation = -4070.629597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.02385 -39.41236 -38.27117 -37.64393 -34.79110 -33.81628 -32.63602 -31.02626 -30.92292 -29.22991 -28.19672 -28.07798 -27.13953 -24.55188 -24.05923 -23.26856 -22.28724 -22.18785 -20.25393 -19.80900 -18.38069 -17.58822 -17.46678 -16.77278 -16.35974 -15.96584 -15.40441 -14.94179 -14.74574 -14.60254 -14.20449 -14.17146 -13.97011 -13.78932 -13.68145 -13.28990 -13.08085 -12.93732 -12.72485 -12.52984 -12.31862 -12.25145 -11.80801 -11.58284 -11.49947 -11.29201 -11.19996 -11.09070 -10.68207 -10.63932 -10.59812 -9.96910 -9.86680 -9.70999 -9.66279 -9.53967 -9.48393 -9.31329 -8.65737 -8.41919 -8.34565 -7.78525 -6.60831 -5.50943 -2.80448 0.67802 1.15042 3.10976 3.14390 3.54386 3.55965 3.61041 3.74165 4.04868 4.27561 4.40422 4.61060 4.72788 4.73657 4.80962 4.95791 5.06493 5.22136 5.24673 5.28268 5.36884 5.46888 5.47601 5.56689 5.62382 5.72860 5.76468 5.83211 5.93809 5.94916 6.04801 6.09873 6.18250 6.22566 6.32649 6.44040 6.46098 6.60134 6.72168 6.75432 6.80208 6.91944 7.17948 7.19566 7.40191 7.70084 7.73171 7.81214 8.05644 8.17006 8.44932 8.89579 9.44055 10.05333 10.70130 11.62078 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.005105 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.823974 B = 5483.967377 C = 7146.700245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.266 6.266 3 C 0.142 3.858 4 C -0.179 4.179 5 C -0.081 4.081 6 C -0.112 4.112 7 C 0.047 3.953 8 N -0.406 5.406 9 C 0.052 3.948 10 C 0.572 3.428 11 O -0.505 6.505 12 N -0.577 5.577 13 C 0.079 3.921 14 C -0.121 4.121 15 C -0.102 4.102 16 H 0.073 0.927 17 C -0.144 4.144 18 C 0.178 3.822 19 N -0.588 5.588 20 C -0.202 4.202 21 H 0.082 0.918 22 C -0.009 4.009 23 N -0.927 5.927 24 Si 0.897 3.103 25 H -0.294 1.294 26 H -0.295 1.295 27 H -0.272 1.272 28 C 0.155 3.845 29 H 0.023 0.977 30 C 0.115 3.885 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.143 0.857 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.163 0.837 39 H 0.053 0.947 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.037 0.963 47 H 0.247 0.753 48 H 0.093 0.907 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 16.878 -10.508 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.175 6.175 3 C 0.091 3.909 4 C -0.205 4.205 5 C -0.083 4.083 6 C -0.170 4.170 7 C -0.112 4.112 8 N -0.117 5.117 9 C -0.086 4.086 10 C 0.357 3.643 11 O -0.378 6.378 12 N -0.309 5.309 13 C -0.043 4.043 14 C -0.160 4.160 15 C -0.122 4.122 16 H 0.091 0.909 17 C -0.183 4.183 18 C 0.054 3.946 19 N -0.313 5.313 20 C -0.331 4.331 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.576 5.576 24 Si 0.728 3.272 25 H -0.221 1.221 26 H -0.222 1.222 27 H -0.197 1.197 28 C 0.046 3.954 29 H 0.041 0.959 30 C -0.009 4.009 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.180 0.820 39 H 0.072 0.928 40 H 0.154 0.846 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.111 0.889 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.044 15.914 -10.428 19.684 hybrid contribution -1.911 -0.310 0.319 1.962 sum -6.955 15.604 -10.109 19.851 Atomic orbital electron populations 1.23207 0.78826 1.04709 1.00854 1.86502 1.20652 1.24294 1.86074 1.20031 0.92326 0.85679 0.92848 1.21595 1.00782 0.91308 1.06856 1.20902 0.95213 0.95574 0.96632 1.20788 0.99877 0.93472 1.02828 1.22734 0.90703 0.96812 1.00985 1.67693 1.37358 0.97585 1.09108 1.20959 0.88798 0.92979 1.05880 1.17396 0.81844 0.86745 0.78312 1.90841 1.70664 1.27468 1.48864 1.47507 1.04886 1.11398 1.67124 1.22874 0.98397 0.87519 0.95544 1.21934 0.98125 0.97122 0.98782 1.22396 0.96890 0.95845 0.97085 0.90872 1.23165 0.99549 0.99550 0.95995 1.21204 0.89597 0.94949 0.88857 1.44296 1.29837 1.57772 0.99432 1.19030 0.99376 1.21409 0.93250 0.90061 1.24684 0.98640 1.01691 0.95357 1.69980 1.38492 1.52893 0.96269 0.86264 0.84837 0.78799 0.77344 1.22142 1.22198 1.19739 1.20692 0.92748 0.92802 0.89117 0.95933 1.21379 0.93421 0.89379 0.96679 0.87656 0.92595 0.92713 0.83896 0.90478 0.91186 0.90626 0.82028 0.92830 0.84575 0.90633 0.92555 0.92447 0.92944 0.93560 0.94523 0.94300 0.88895 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.83 101.05 0.99 1.22 16 2 O -0.27 -4.68 8.59 -40.47 -0.35 -5.03 16 3 C 0.14 2.31 6.70 -38.55 -0.26 2.05 16 4 C -0.18 -2.10 8.81 -39.15 -0.34 -2.44 16 5 C -0.08 -0.81 5.90 -104.40 -0.62 -1.43 16 6 C -0.11 -0.68 10.03 36.01 0.36 -0.32 16 7 C 0.05 0.53 10.85 -17.55 -0.19 0.34 16 8 N -0.41 -6.06 6.15 -9.71 -0.06 -6.12 16 9 C 0.05 0.94 6.62 -82.88 -0.55 0.39 16 10 C 0.57 12.38 7.65 -12.34 -0.09 12.29 16 11 O -0.50 -12.68 14.66 -16.52 -0.24 -12.93 16 12 N -0.58 -11.58 2.96 -174.91 -0.52 -12.10 16 13 C 0.08 1.33 5.98 -3.51 -0.02 1.31 16 14 C -0.12 -2.15 5.06 -26.51 -0.13 -2.29 16 15 C -0.10 -1.86 3.68 -88.43 -0.33 -2.19 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.14 -2.81 6.33 -24.32 -0.15 -2.96 16 18 C 0.18 4.50 4.63 -2.74 -0.01 4.49 16 19 N -0.59 -15.45 3.20 -164.42 -0.53 -15.97 16 20 C -0.20 -5.95 9.64 -15.06 -0.15 -6.10 16 21 H 0.08 2.45 6.61 -52.49 -0.35 2.10 16 22 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 23 N -0.93 -28.75 10.43 55.49 0.58 -28.17 16 24 Si 0.90 24.33 29.56 -169.99 -5.02 19.31 16 25 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 26 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 27 H -0.27 -7.51 7.11 56.52 0.40 -7.11 16 28 C 0.15 3.33 2.97 -68.30 -0.20 3.12 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 C 0.11 2.34 5.69 -4.78 -0.03 2.32 16 31 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 33 H 0.05 0.47 7.68 -51.93 -0.40 0.08 16 34 H 0.14 1.24 6.46 -52.49 -0.34 0.91 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.38 8.09 -51.93 -0.42 -0.05 16 37 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.14 2.22 4.02 -82.78 -0.33 1.89 16 41 H 0.07 1.66 6.85 -51.93 -0.36 1.30 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 1.30 6.92 -51.93 -0.36 0.94 16 46 H 0.04 1.02 7.70 -51.93 -0.40 0.62 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.09 2.17 5.58 -51.93 -0.29 1.88 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -36.76 377.91 -9.68 -46.43 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.42 Total: -0.56 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -1.82 Total: 9.45 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.52 Total: -62.36 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.59 Total: -17.96 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.02 Total: 19.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.76 -9.68 -46.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042099199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.319 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds