Wall clock time and date at job start Wed Apr 1 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 110.88663 * 2 1 4 4 C 1.34782 * 119.99503 * 303.88084 * 3 2 1 5 5 O 1.21508 * 120.00401 * 359.97438 * 4 3 2 6 6 C 1.48161 * 119.99399 * 179.97438 * 4 3 2 7 7 C 1.39969 * 120.89464 * 0.02562 * 6 4 3 8 8 C 1.37983 * 119.13510 * 179.97438 * 7 6 4 9 9 N 1.31914 * 120.97256 * 359.74092 * 8 7 6 10 10 C 1.32169 * 121.97593 * 0.52619 * 9 8 7 11 11 O 1.35679 * 119.62732 * 179.75253 * 10 9 8 12 12 C 1.42901 * 116.99640 * 359.72400 * 11 10 9 13 13 C 1.53782 * 113.61628 * 209.99948 * 12 11 10 14 14 C 1.53781 * 87.08260 * 220.02162 * 13 12 11 15 15 C 1.53786 * 87.17350 * 25.39213 * 14 13 12 16 16 C 1.38899 * 120.74903 * 359.47656 * 10 9 8 17 17 C 1.55161 * 111.00355 * 123.87943 * 2 1 3 18 18 C 1.54320 * 102.93976 * 153.61268 * 17 2 1 19 19 N 1.47024 * 107.27332 * 337.80721 * 18 17 2 20 20 C 1.36935 * 125.64320 * 178.98379 * 19 18 17 21 21 H 1.08004 * 119.99326 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00569 * 359.97438 * 20 19 18 23 23 N 1.31619 * 120.00050 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47412 * 89.99221 * 24 22 20 26 26 H 1.48495 * 109.47472 * 209.99940 * 24 22 20 27 27 H 1.48504 * 109.46883 * 329.99714 * 24 22 20 28 28 C 1.47418 * 108.70406 * 358.94024 * 19 18 17 29 29 H 1.08994 * 109.46829 * 59.29964 * 1 2 3 30 30 H 1.09005 * 109.47193 * 179.30040 * 1 2 3 31 31 H 1.08995 * 109.47263 * 299.29881 * 1 2 3 32 32 H 0.96998 * 120.00390 * 123.88038 * 3 2 1 33 33 H 1.07997 * 120.42870 * 359.97438 * 7 6 4 34 34 H 1.07993 * 119.50862 * 180.02562 * 8 7 6 35 35 H 1.08997 * 112.90886 * 341.25715 * 12 11 10 36 36 H 1.09001 * 113.61250 * 105.46980 * 13 12 11 37 37 H 1.08997 * 113.61225 * 334.56821 * 13 12 11 38 38 H 1.09002 * 113.61445 * 139.98212 * 14 13 12 39 39 H 1.09002 * 113.61408 * 270.79943 * 14 13 12 40 40 H 1.08993 * 113.61491 * 89.15923 * 15 14 13 41 41 H 1.09000 * 113.61138 * 220.06261 * 15 14 13 42 42 H 1.08003 * 120.52303 * 180.27492 * 16 10 9 43 43 H 1.08995 * 110.72024 * 271.98043 * 17 2 1 44 44 H 1.08999 * 110.72045 * 35.07325 * 17 2 1 45 45 H 1.09007 * 109.88051 * 97.22759 * 18 17 2 46 46 H 1.08999 * 109.88236 * 218.38621 * 18 17 2 47 47 H 0.97002 * 120.00051 * 179.97438 * 23 22 20 48 48 H 1.09002 * 110.36513 * 265.29234 * 28 19 18 49 49 H 1.08996 * 110.36541 * 142.96296 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.6846 2.2303 -0.9691 5 8 0.9203 1.8716 -1.8430 6 6 2.2124 3.6147 -0.9688 7 6 3.0942 4.0474 0.0284 8 6 3.5638 5.3444 -0.0067 9 7 3.1977 6.1732 -0.9654 10 6 2.3636 5.8098 -1.9241 11 8 2.0151 6.7029 -2.8842 12 6 2.5822 8.0112 -2.7897 13 6 1.6816 9.1162 -3.3666 14 6 2.9594 9.7469 -3.9447 15 6 3.5747 8.3377 -3.9205 16 6 1.8442 4.5222 -1.9632 17 6 2.0862 -0.8075 1.2026 18 6 3.4678 -1.2731 0.6969 19 7 3.4280 -1.2422 -0.7725 20 6 4.4654 -1.5656 -1.6058 21 1 4.3349 -1.5110 -2.6766 22 6 5.6844 -1.9636 -1.0746 23 7 5.8435 -2.0297 0.2303 24 14 7.0993 -2.4054 -2.2115 25 1 7.9026 -1.1897 -2.4976 26 1 7.9593 -3.4247 -1.5584 27 1 6.5605 -2.9531 -3.4823 28 6 2.0861 -0.8066 -1.2000 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3634 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8962 32 1 2.6628 1.6549 0.6974 33 1 3.4029 3.3749 0.8150 34 1 4.2448 5.6845 0.7594 35 1 2.9665 8.2362 -1.7948 36 1 1.1987 9.7281 -2.6047 37 1 0.9874 8.7605 -4.1279 38 1 2.8314 10.1502 -4.9492 39 1 3.4460 10.4475 -3.2661 40 1 3.3989 7.7688 -4.8334 41 1 4.6179 8.3221 -3.6051 42 1 1.1663 4.2278 -2.7508 43 1 2.1915 -0.1693 2.0799 44 1 1.4455 -1.6612 1.4232 45 1 4.2426 -0.5982 1.0610 46 1 3.6659 -2.2881 1.0412 47 1 6.6953 -2.3082 0.6016 48 1 1.4533 -1.6707 -1.4022 49 1 2.1569 -0.1720 -2.0834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046740543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:03 Heat of formation + Delta-G solvation = -1.949735 kcal Electronic energy + Delta-G solvation = -30334.747804 eV Core-core repulsion = 26263.127956 eV Total energy + Delta-G solvation = -4071.619848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 13.20 seconds Orbital eigenvalues (eV) -42.04098 -41.16592 -39.93677 -38.83221 -37.39005 -35.74324 -34.22482 -33.30882 -31.82569 -31.22003 -30.32973 -27.53193 -26.85556 -26.65655 -25.69549 -25.05163 -24.38260 -22.50269 -21.93923 -20.62473 -20.58768 -19.94023 -18.88458 -18.41649 -17.48296 -17.01219 -16.80247 -16.71481 -16.64879 -16.19550 -16.06968 -15.82546 -15.59266 -15.50502 -15.02848 -14.84326 -14.27587 -14.13378 -13.88022 -13.58574 -13.46026 -13.44383 -13.42981 -13.14616 -12.97445 -12.85396 -12.74871 -12.47714 -12.25047 -12.15177 -12.04585 -11.99887 -11.71719 -11.64130 -11.44567 -11.26368 -11.06751 -11.02397 -10.72029 -10.60895 -10.08908 -9.58766 -8.87012 -7.86684 -5.20078 -0.41964 0.05897 1.43489 1.43949 1.52950 1.73605 1.83413 2.21389 2.47245 2.73619 3.20846 3.31446 3.43117 3.57185 3.58521 3.61783 3.71290 3.86234 3.87048 3.89738 3.98217 4.02879 4.08383 4.18146 4.52225 4.58294 4.64621 4.66173 4.70763 4.75404 4.76277 4.79904 4.85873 4.91809 4.96419 4.97074 5.01048 5.02108 5.08251 5.10196 5.20519 5.37138 5.42273 5.44781 5.59190 5.68330 5.77425 6.19748 6.21580 6.50032 6.68789 7.11169 7.12828 7.76577 8.40495 9.22947 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002702 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.183661 B =10359.693578 C =11673.397604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.166 3.834 3 N -0.685 5.685 4 C 0.558 3.442 5 O -0.559 6.559 6 C -0.058 4.058 7 C -0.174 4.174 8 C 0.145 3.855 9 N -0.533 5.533 10 C 0.311 3.689 11 O -0.306 6.306 12 C 0.046 3.954 13 C -0.133 4.133 14 C -0.125 4.125 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.128 4.128 18 C 0.183 3.817 19 N -0.621 5.621 20 C -0.242 4.242 21 H 0.066 0.934 22 C -0.056 4.056 23 N -0.943 5.943 24 Si 0.971 3.029 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.277 1.277 28 C 0.129 3.871 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.410 0.590 33 H 0.165 0.835 34 H 0.206 0.794 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.140 0.860 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.022 0.978 46 H 0.010 0.990 47 H 0.248 0.752 48 H 0.028 0.972 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 21.713 2.491 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.079 3.921 3 N -0.336 5.336 4 C 0.344 3.656 5 O -0.439 6.439 6 C -0.069 4.069 7 C -0.194 4.194 8 C -0.010 4.010 9 N -0.257 5.257 10 C 0.133 3.867 11 O -0.213 6.213 12 C -0.010 4.010 13 C -0.171 4.171 14 C -0.162 4.162 15 C -0.195 4.195 16 C -0.175 4.175 17 C -0.166 4.166 18 C 0.059 3.941 19 N -0.347 5.347 20 C -0.371 4.371 21 H 0.084 0.916 22 C -0.250 4.250 23 N -0.592 5.592 24 Si 0.799 3.201 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.202 1.202 28 C 0.002 3.998 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.183 0.817 34 H 0.223 0.777 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.158 0.842 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.040 0.960 46 H 0.028 0.972 47 H 0.058 0.942 48 H 0.046 0.954 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.344 22.174 1.646 23.748 hybrid contribution 1.131 -1.416 -0.510 1.882 sum -7.213 20.758 1.136 22.005 Atomic orbital electron populations 1.21972 0.91700 1.03352 1.03233 1.21430 0.94322 0.80305 0.95997 1.45667 1.48144 1.11201 1.28573 1.18305 0.80739 0.85040 0.81485 1.90702 1.36948 1.78705 1.37519 1.20153 0.97647 0.93100 0.96000 1.22477 0.98193 0.98888 0.99856 1.23029 0.95389 0.88466 0.94159 1.67174 1.14783 1.39090 1.04677 1.19662 0.90873 0.88187 0.87957 1.86348 1.66827 1.23218 1.44934 1.24556 0.96632 0.78628 1.01186 1.23287 0.97726 0.94947 1.01110 1.22622 0.95502 0.95168 1.02947 1.23509 0.99240 0.98070 0.98658 1.21073 1.03895 0.91241 1.01282 1.23121 0.96843 1.00089 0.96534 1.20981 0.92962 0.97669 0.82507 1.44682 1.08386 1.78895 1.02746 1.19283 0.90678 1.37890 0.89242 0.91578 1.25470 0.99796 1.02243 0.97478 1.70124 1.24301 1.54483 1.10274 0.85200 0.79387 0.77406 0.78067 1.21347 1.21508 1.20209 1.21992 0.86510 0.95157 0.96110 0.92053 0.90483 0.90422 0.75256 0.81707 0.77743 0.86668 0.89396 0.89351 0.89244 0.88255 0.90075 0.90794 0.84234 0.88064 0.88803 0.96005 0.97192 0.94234 0.95424 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.52 71.98 0.61 -3.44 16 2 C 0.17 5.54 0.82 5.00 0.00 5.55 16 3 N -0.69 -21.21 5.14 -419.16 -2.15 -23.36 16 4 C 0.56 18.70 7.17 86.88 0.62 19.32 16 5 O -0.56 -22.19 13.29 -3.74 -0.05 -22.24 16 6 C -0.06 -1.67 5.91 -19.90 -0.12 -1.79 16 7 C -0.17 -3.77 9.61 22.63 0.22 -3.56 16 8 C 0.15 2.80 11.17 84.62 0.94 3.74 16 9 N -0.53 -12.67 8.56 -309.15 -2.65 -15.32 16 10 C 0.31 8.47 7.49 84.80 0.63 9.10 16 11 O -0.31 -7.92 10.13 -89.97 -0.91 -8.83 16 12 C 0.05 0.89 4.17 31.18 0.13 1.02 16 13 C -0.13 -1.89 7.91 31.12 0.25 -1.64 16 14 C -0.13 -1.43 8.08 31.12 0.25 -1.17 16 15 C -0.16 -2.62 7.93 31.18 0.25 -2.38 16 16 C -0.15 -4.52 9.61 22.75 0.22 -4.30 16 17 C -0.13 -4.08 5.97 31.78 0.19 -3.89 16 18 C 0.18 8.47 5.36 86.73 0.47 8.93 16 19 N -0.62 -31.97 3.39 -692.00 -2.35 -34.32 16 20 C -0.24 -13.91 10.28 84.03 0.86 -13.05 16 21 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 22 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 23 N -0.94 -55.12 10.31 21.65 0.22 -54.90 16 24 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 C 0.13 5.65 6.17 86.86 0.54 6.18 16 29 H 0.06 1.98 6.00 -2.39 -0.01 1.97 16 30 H 0.08 1.97 8.13 -2.38 -0.02 1.95 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.41 10.73 6.65 -92.71 -0.62 10.11 16 33 H 0.17 2.76 6.53 -2.91 -0.02 2.74 16 34 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.12 2.23 6.88 -2.39 -0.02 2.21 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.14 4.35 7.74 -2.91 -0.02 4.33 16 43 H 0.10 2.56 8.09 -2.39 -0.02 2.54 16 44 H 0.09 2.71 8.04 -2.39 -0.02 2.69 16 45 H 0.02 1.10 7.38 -2.38 -0.02 1.08 16 46 H 0.01 0.52 7.51 -2.39 -0.02 0.50 16 47 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 48 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 49 H 0.02 1.19 6.86 -2.39 -0.02 1.17 16 Total: -1.00 -73.39 392.38 1.02 -72.37 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.35 Total: 22.33 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 6.53 Total: 15.89 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -6.93 Total: -127.90 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.96 Total: -31.07 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.39 1.02 -72.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046740543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.417 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.20 seconds