Wall clock time and date at job start Wed Apr 1 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46502 * 120.00507 * 2 1 4 4 C 1.34785 * 119.99512 * 179.97438 * 2 1 3 5 5 O 1.21542 * 120.00300 * 7.05450 * 4 2 1 6 6 C 1.47867 * 119.99533 * 187.05702 * 4 2 1 7 7 C 1.39698 * 120.07557 * 20.49531 * 6 4 2 8 8 C 1.38062 * 120.14747 * 179.97438 * 7 6 4 9 9 C 1.38104 * 120.29186 * 359.97438 * 8 7 6 10 10 C 1.39662 * 120.14348 * 0.02562 * 9 8 7 11 11 C 1.47864 * 120.07250 * 179.97438 * 10 9 8 12 12 O 1.21551 * 120.00107 * 179.97438 * 11 10 9 13 13 N 1.34784 * 119.99973 * 0.02562 * 11 10 9 14 14 C 1.46490 * 120.00104 * 180.02562 * 13 11 10 15 15 C 1.53005 * 110.63965 * 300.69837 * 14 13 11 16 16 C 1.55154 * 110.72100 * 177.55969 * 14 13 11 17 17 C 1.55386 * 101.36321 * 277.03921 * 16 14 13 18 18 N 1.47421 * 104.87687 * 323.01821 * 17 16 14 19 19 C 1.36939 * 125.64927 * 204.10315 * 18 17 16 20 20 H 1.08003 * 119.99801 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00105 * 0.03022 * 19 18 17 22 22 N 1.31622 * 119.99943 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00148 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46959 * 120.00166 * 23 21 19 26 26 H 1.48495 * 109.47297 * 240.00210 * 23 21 19 27 27 C 1.47021 * 108.70485 * 24.12899 * 18 17 16 28 28 C 1.39294 * 120.06620 * 200.21626 * 6 4 2 29 29 H 1.09000 * 109.47216 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47591 * 119.99765 * 1 2 3 31 31 H 1.08997 * 109.47655 * 240.00015 * 1 2 3 32 32 H 1.08996 * 109.46939 * 87.36638 * 3 2 1 33 33 H 1.08997 * 109.47170 * 207.36598 * 3 2 1 34 34 H 1.09000 * 109.46735 * 327.37049 * 3 2 1 35 35 H 1.08005 * 119.93029 * 359.95053 * 7 6 4 36 36 H 1.07990 * 119.85446 * 179.97438 * 8 7 6 37 37 H 1.08000 * 119.92646 * 180.02562 * 9 8 7 38 38 H 0.96998 * 119.99428 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.47317 * 59.30229 * 15 14 13 40 40 H 1.09001 * 109.46708 * 179.30251 * 15 14 13 41 41 H 1.09000 * 109.47145 * 299.29774 * 15 14 13 42 42 H 1.09001 * 111.00591 * 35.20959 * 16 14 13 43 43 H 1.09003 * 111.00807 * 159.06335 * 16 14 13 44 44 H 1.09003 * 110.34312 * 204.16557 * 17 16 14 45 45 H 1.08999 * 110.35002 * 81.87426 * 17 16 14 46 46 H 0.96993 * 120.00078 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.88479 * 239.52788 * 27 18 17 48 48 H 1.08999 * 110.01362 * 118.42761 * 27 18 17 49 49 H 1.07999 * 120.15190 * 0.02562 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1387 -1.1673 0.0005 5 8 1.5379 -2.2160 -0.1283 6 6 3.6090 -1.1721 0.1579 7 6 4.2564 -0.0699 0.7215 8 6 5.6290 -0.0730 0.8696 9 6 6.3711 -1.1644 0.4627 10 6 5.7365 -2.2728 -0.1023 11 6 6.5326 -3.4402 -0.5379 12 8 5.9788 -4.4043 -1.0291 13 7 7.8722 -3.4356 -0.3894 14 6 8.6610 -4.5919 -0.8215 15 6 8.2175 -5.8547 -0.0801 16 6 10.1759 -4.3336 -0.6082 17 6 10.5324 -3.5282 -1.8882 18 7 9.7204 -4.1374 -2.9572 19 6 10.0073 -4.1026 -4.2957 20 1 9.3457 -4.5813 -5.0025 21 6 11.1487 -3.4520 -4.7442 22 7 11.9553 -2.8692 -3.8828 23 14 11.5397 -3.4038 -6.5702 24 1 10.4830 -4.1273 -7.3220 25 1 11.5937 -1.9921 -7.0277 26 1 12.8530 -4.0533 -6.8125 27 6 8.5511 -4.7882 -2.3483 28 6 4.3510 -2.2781 -0.2503 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3634 -0.5138 0.8899 32 1 2.3383 1.6069 1.0265 33 1 3.1696 1.1269 -0.4724 34 1 1.6297 2.0161 -0.5541 35 1 3.6819 0.7867 1.0418 36 1 6.1246 0.7817 1.3055 37 1 7.4445 -1.1607 0.5817 38 1 8.3140 -2.6663 0.0029 39 1 7.1620 -6.0409 -0.2786 40 1 8.8073 -6.7042 -0.4245 41 1 8.3674 -5.7188 0.9910 42 1 10.3486 -3.7417 0.2907 43 1 10.7305 -5.2713 -0.5691 44 1 11.5940 -3.6273 -2.1150 45 1 10.2671 -2.4785 -1.7618 46 1 12.7530 -2.4150 -4.1961 47 1 8.5529 -5.8518 -2.5864 48 1 7.6342 -4.3277 -2.7161 49 1 3.8550 -3.1344 -0.6829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046780550.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:00 Heat of formation + Delta-G solvation = 17.791540 kcal Electronic energy + Delta-G solvation = -30413.812270 eV Core-core repulsion = 26343.048468 eV Total energy + Delta-G solvation = -4070.763802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.87601 -39.96591 -38.36109 -37.08097 -36.06610 -34.08017 -32.57334 -31.37214 -31.28951 -29.88015 -28.66747 -28.32558 -26.88735 -25.67496 -24.32885 -23.54148 -23.11677 -21.14193 -20.38821 -20.00786 -19.00050 -18.04451 -17.01986 -16.86999 -16.49612 -16.19945 -16.09234 -15.54537 -14.80032 -14.73895 -14.57094 -14.48232 -13.95301 -13.82297 -13.70364 -13.57992 -13.24923 -13.20387 -12.98736 -12.79875 -12.60215 -12.46623 -12.23435 -11.92777 -11.74323 -11.70198 -11.54059 -11.37002 -10.93078 -10.86787 -10.41796 -10.35221 -10.23068 -10.05192 -9.96152 -9.66719 -9.33213 -9.32195 -9.19430 -9.05879 -8.66498 -8.61987 -6.80323 -5.64762 -3.04790 0.45364 0.88948 2.39913 2.57256 3.06604 3.34868 3.40864 3.46899 3.49522 3.78144 4.09389 4.37285 4.50642 4.57768 4.65806 4.76129 4.79117 4.91656 4.93726 5.12782 5.14932 5.16687 5.22268 5.37610 5.40618 5.44452 5.50267 5.57502 5.65426 5.74246 5.92352 5.97991 6.04554 6.05528 6.09067 6.17988 6.23223 6.34802 6.45164 6.49802 6.54276 6.71171 6.85101 6.91449 7.13690 7.44127 7.64844 7.77690 7.81939 7.85131 8.35554 8.47335 9.24174 9.84668 10.49428 11.39769 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.002547 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.280381 B =10989.851501 C =11656.032809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.621 5.621 3 C 0.064 3.936 4 C 0.560 3.440 5 O -0.527 6.527 6 C -0.148 4.148 7 C -0.091 4.091 8 C -0.135 4.135 9 C -0.059 4.059 10 C -0.133 4.133 11 C 0.557 3.443 12 O -0.528 6.528 13 N -0.701 5.701 14 C 0.160 3.840 15 C -0.151 4.151 16 C -0.147 4.147 17 C 0.153 3.847 18 N -0.604 5.604 19 C -0.215 4.215 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.925 5.925 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.136 3.864 28 C -0.002 4.002 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.396 0.604 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.010 0.990 46 H 0.250 0.750 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 10.878 15.024 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.355 5.355 3 C -0.078 4.078 4 C 0.350 3.650 5 O -0.404 6.404 6 C -0.151 4.151 7 C -0.109 4.109 8 C -0.153 4.153 9 C -0.078 4.078 10 C -0.136 4.136 11 C 0.344 3.656 12 O -0.406 6.406 13 N -0.352 5.352 14 C 0.074 3.926 15 C -0.210 4.210 16 C -0.186 4.186 17 C 0.028 3.972 18 N -0.330 5.330 19 C -0.344 4.344 20 H 0.095 0.905 21 C -0.209 4.209 22 N -0.575 5.575 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.010 3.990 28 C -0.022 4.022 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.231 0.769 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.217 9.681 14.426 23.766 hybrid contribution 0.466 0.738 -0.745 1.147 sum -15.751 10.419 13.682 23.320 Atomic orbital electron populations 1.21644 0.78512 1.02374 1.02674 1.47589 1.07237 1.06144 1.74530 1.22492 0.98520 0.85244 1.01542 1.18333 0.87034 0.83276 0.76386 1.90803 1.69798 1.31181 1.48609 1.19753 0.92870 0.96439 1.06030 1.22398 0.95386 0.97554 0.95589 1.21087 0.93700 0.98893 1.01609 1.21626 1.00414 0.92163 0.93609 1.20071 0.94088 0.95841 1.03580 1.18064 0.82260 0.86521 0.78779 1.90757 1.71129 1.34924 1.43793 1.45902 1.05987 1.20365 1.62979 1.21379 0.91185 0.84753 0.95282 1.22062 1.03371 0.96496 0.99055 1.23449 0.92567 1.02077 1.00533 1.22021 1.00026 0.92135 0.82998 1.44504 1.22721 1.62919 1.02845 1.19155 1.05201 1.28524 0.81471 0.90476 1.24758 0.97621 1.00480 0.98014 1.69780 1.15118 1.41192 1.31388 0.85994 0.77868 0.77228 0.84448 1.20528 1.21846 1.21760 1.21610 0.91586 0.96473 0.89370 1.21361 0.92102 0.96732 0.91974 0.90512 0.91793 0.91976 0.91767 0.89273 0.90885 0.83085 0.84625 0.84926 0.76884 0.90728 0.91678 0.93133 0.91884 0.90403 0.87392 0.97230 0.93885 0.95072 0.94899 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.17 59.84 0.61 1.23 16 2 N -0.62 -5.39 3.27 -190.65 -0.62 -6.02 16 3 C 0.06 0.31 8.60 59.85 0.51 0.83 16 4 C 0.56 7.01 7.52 -12.32 -0.09 6.92 16 5 O -0.53 -8.62 16.53 5.33 0.09 -8.54 16 6 C -0.15 -1.73 5.56 -105.02 -0.58 -2.31 16 7 C -0.09 -0.75 7.62 -39.10 -0.30 -1.05 16 8 C -0.13 -1.09 10.02 -39.70 -0.40 -1.49 16 9 C -0.06 -0.62 9.54 -39.10 -0.37 -0.99 16 10 C -0.13 -1.83 5.87 -105.02 -0.62 -2.45 16 11 C 0.56 9.41 6.99 -12.32 -0.09 9.32 16 12 O -0.53 -10.64 13.28 5.32 0.07 -10.57 16 13 N -0.70 -11.19 5.10 -46.84 -0.24 -11.43 16 14 C 0.16 2.88 0.80 -129.99 -0.10 2.77 16 15 C -0.15 -2.44 8.41 37.16 0.31 -2.13 16 16 C -0.15 -2.64 6.11 -24.32 -0.15 -2.79 16 17 C 0.15 3.59 5.88 -2.27 -0.01 3.58 16 18 N -0.60 -15.70 3.40 -169.77 -0.58 -16.28 16 19 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 20 H 0.08 2.18 7.83 -52.48 -0.41 1.76 16 21 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 22 N -0.93 -26.73 10.09 55.49 0.56 -26.17 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 C 0.14 3.09 6.16 -3.06 -0.02 3.07 16 28 C 0.00 -0.03 9.13 -38.78 -0.35 -0.38 16 29 H 0.08 0.29 7.83 -51.93 -0.41 -0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.19 6.92 -51.93 -0.36 -0.17 16 33 H 0.09 0.48 5.36 -51.93 -0.28 0.20 16 34 H 0.07 0.23 7.98 -51.93 -0.41 -0.18 16 35 H 0.15 0.77 4.00 -52.48 -0.21 0.56 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 1.14 6.39 -52.49 -0.34 0.81 16 38 H 0.40 5.28 6.50 -40.82 -0.27 5.01 16 39 H 0.07 1.31 6.20 -51.93 -0.32 0.99 16 40 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 43 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 44 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 45 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 48 H 0.03 0.81 6.68 -51.93 -0.35 0.47 16 49 H 0.15 2.38 7.37 -52.49 -0.39 1.99 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -36.11 386.57 -8.77 -44.88 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.95 Total: 3.59 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -1.90 Total: 7.35 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.88 Total: -59.89 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.16 Total: -19.11 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.11 -8.77 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046780550.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.669 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds