Wall clock time and date at job start Wed Apr 1 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46502 * 120.00507 * 2 1 4 4 C 1.34785 * 119.99512 * 179.97438 * 2 1 3 5 5 O 1.21542 * 120.00300 * 7.05450 * 4 2 1 6 6 C 1.47867 * 119.99533 * 187.05702 * 4 2 1 7 7 C 1.39698 * 120.07557 * 20.49531 * 6 4 2 8 8 C 1.38062 * 120.14747 * 179.97438 * 7 6 4 9 9 C 1.38104 * 120.29186 * 359.97438 * 8 7 6 10 10 C 1.39662 * 120.14348 * 0.02562 * 9 8 7 11 11 C 1.47864 * 120.07250 * 179.97438 * 10 9 8 12 12 O 1.21551 * 120.00107 * 179.97438 * 11 10 9 13 13 N 1.34784 * 119.99973 * 0.02562 * 11 10 9 14 14 C 1.46490 * 120.00104 * 180.02562 * 13 11 10 15 15 C 1.53005 * 110.63965 * 300.69837 * 14 13 11 16 16 C 1.55154 * 110.72100 * 177.55969 * 14 13 11 17 17 C 1.55386 * 101.36321 * 277.03921 * 16 14 13 18 18 N 1.47421 * 104.87687 * 323.01821 * 17 16 14 19 19 C 1.36939 * 125.64927 * 204.10315 * 18 17 16 20 20 H 1.08003 * 119.99801 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00105 * 0.03022 * 19 18 17 22 22 N 1.31622 * 119.99943 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00148 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46959 * 120.00166 * 23 21 19 26 26 H 1.48495 * 109.47297 * 240.00210 * 23 21 19 27 27 C 1.47021 * 108.70485 * 24.12899 * 18 17 16 28 28 C 1.39294 * 120.06620 * 200.21626 * 6 4 2 29 29 H 1.09000 * 109.47216 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47591 * 119.99765 * 1 2 3 31 31 H 1.08997 * 109.47655 * 240.00015 * 1 2 3 32 32 H 1.08996 * 109.46939 * 87.36638 * 3 2 1 33 33 H 1.08997 * 109.47170 * 207.36598 * 3 2 1 34 34 H 1.09000 * 109.46735 * 327.37049 * 3 2 1 35 35 H 1.08005 * 119.93029 * 359.95053 * 7 6 4 36 36 H 1.07990 * 119.85446 * 179.97438 * 8 7 6 37 37 H 1.08000 * 119.92646 * 180.02562 * 9 8 7 38 38 H 0.96998 * 119.99428 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.47317 * 59.30229 * 15 14 13 40 40 H 1.09001 * 109.46708 * 179.30251 * 15 14 13 41 41 H 1.09000 * 109.47145 * 299.29774 * 15 14 13 42 42 H 1.09001 * 111.00591 * 35.20959 * 16 14 13 43 43 H 1.09003 * 111.00807 * 159.06335 * 16 14 13 44 44 H 1.09003 * 110.34312 * 204.16557 * 17 16 14 45 45 H 1.08999 * 110.35002 * 81.87426 * 17 16 14 46 46 H 0.96993 * 120.00078 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.88479 * 239.52788 * 27 18 17 48 48 H 1.08999 * 110.01362 * 118.42761 * 27 18 17 49 49 H 1.07999 * 120.15190 * 0.02562 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1387 -1.1673 0.0005 5 8 1.5379 -2.2160 -0.1283 6 6 3.6090 -1.1721 0.1579 7 6 4.2564 -0.0699 0.7215 8 6 5.6290 -0.0730 0.8696 9 6 6.3711 -1.1644 0.4627 10 6 5.7365 -2.2728 -0.1023 11 6 6.5326 -3.4402 -0.5379 12 8 5.9788 -4.4043 -1.0291 13 7 7.8722 -3.4356 -0.3894 14 6 8.6610 -4.5919 -0.8215 15 6 8.2175 -5.8547 -0.0801 16 6 10.1759 -4.3336 -0.6082 17 6 10.5324 -3.5282 -1.8882 18 7 9.7204 -4.1374 -2.9572 19 6 10.0073 -4.1026 -4.2957 20 1 9.3457 -4.5813 -5.0025 21 6 11.1487 -3.4520 -4.7442 22 7 11.9553 -2.8692 -3.8828 23 14 11.5397 -3.4038 -6.5702 24 1 10.4830 -4.1273 -7.3220 25 1 11.5937 -1.9921 -7.0277 26 1 12.8530 -4.0533 -6.8125 27 6 8.5511 -4.7882 -2.3483 28 6 4.3510 -2.2781 -0.2503 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3634 -0.5138 0.8899 32 1 2.3383 1.6069 1.0265 33 1 3.1696 1.1269 -0.4724 34 1 1.6297 2.0161 -0.5541 35 1 3.6819 0.7867 1.0418 36 1 6.1246 0.7817 1.3055 37 1 7.4445 -1.1607 0.5817 38 1 8.3140 -2.6663 0.0029 39 1 7.1620 -6.0409 -0.2786 40 1 8.8073 -6.7042 -0.4245 41 1 8.3674 -5.7188 0.9910 42 1 10.3486 -3.7417 0.2907 43 1 10.7305 -5.2713 -0.5691 44 1 11.5940 -3.6273 -2.1150 45 1 10.2671 -2.4785 -1.7618 46 1 12.7530 -2.4150 -4.1961 47 1 8.5529 -5.8518 -2.5864 48 1 7.6342 -4.3277 -2.7161 49 1 3.8550 -3.1344 -0.6829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046780550.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:34 Heat of formation + Delta-G solvation = -7.751851 kcal Electronic energy + Delta-G solvation = -30414.919915 eV Core-core repulsion = 26343.048468 eV Total energy + Delta-G solvation = -4071.871447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 22.41 seconds Orbital eigenvalues (eV) -41.85159 -41.17983 -39.49287 -38.50832 -36.86510 -35.80935 -33.99721 -32.75670 -32.16810 -31.41437 -30.33525 -28.92142 -27.59489 -27.56377 -25.68836 -24.88700 -24.02569 -22.38508 -22.02706 -21.03949 -20.42695 -19.23703 -18.69375 -17.85116 -17.40633 -17.15214 -17.09642 -16.80967 -16.66343 -16.10745 -15.72245 -15.59027 -15.39517 -14.96636 -14.72203 -14.55021 -14.46545 -14.27946 -14.07061 -13.83861 -13.74144 -13.60631 -13.34080 -13.32063 -13.16182 -12.97844 -12.84372 -12.79467 -12.56960 -12.11625 -12.05904 -12.01816 -11.96481 -11.71547 -11.56762 -11.16439 -10.77744 -10.75104 -10.21446 -10.17141 -9.93980 -9.74208 -8.89723 -7.80185 -5.23479 -0.39853 -0.03876 1.44489 1.44850 1.49030 1.55715 1.85176 1.96879 2.14467 2.47126 2.80072 3.28743 3.35809 3.49610 3.69143 3.70082 3.81316 3.93458 3.99498 4.05261 4.15475 4.23807 4.28194 4.40721 4.44202 4.58842 4.61646 4.66785 4.69149 4.76700 4.82852 4.84849 4.88109 4.88521 4.89076 4.99480 5.07456 5.13312 5.18737 5.22746 5.32419 5.41457 5.42627 5.58740 5.65007 5.73262 5.79788 6.18690 6.30562 6.55007 6.96689 7.10439 7.20665 7.75438 8.39144 9.21266 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.002547 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.280381 B =10989.851501 C =11656.032809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.613 5.613 3 C 0.051 3.949 4 C 0.549 3.451 5 O -0.586 6.586 6 C -0.158 4.158 7 C -0.067 4.067 8 C -0.119 4.119 9 C -0.055 4.055 10 C -0.155 4.155 11 C 0.552 3.448 12 O -0.574 6.574 13 N -0.693 5.693 14 C 0.170 3.830 15 C -0.143 4.143 16 C -0.126 4.126 17 C 0.155 3.845 18 N -0.622 5.622 19 C -0.243 4.243 20 H 0.066 0.934 21 C -0.058 4.058 22 N -0.941 5.941 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.285 1.285 27 C 0.135 3.865 28 C -0.028 4.028 29 H 0.118 0.882 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.194 0.806 36 H 0.184 0.816 37 H 0.154 0.846 38 H 0.411 0.589 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.078 0.922 45 H -0.003 1.003 46 H 0.250 0.750 47 H 0.020 0.980 48 H 0.003 0.997 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.060 14.558 17.394 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.345 5.345 3 C -0.089 4.089 4 C 0.339 3.661 5 O -0.467 6.467 6 C -0.162 4.162 7 C -0.085 4.085 8 C -0.136 4.136 9 C -0.074 4.074 10 C -0.158 4.158 11 C 0.341 3.659 12 O -0.455 6.455 13 N -0.345 5.345 14 C 0.083 3.917 15 C -0.201 4.201 16 C -0.165 4.165 17 C 0.030 3.970 18 N -0.348 5.348 19 C -0.372 4.372 20 H 0.084 0.916 21 C -0.251 4.251 22 N -0.591 5.591 23 Si 0.806 3.194 24 H -0.201 1.201 25 H -0.215 1.215 26 H -0.212 1.212 27 C 0.009 3.991 28 C -0.048 4.048 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.210 0.790 36 H 0.202 0.798 37 H 0.172 0.828 38 H 0.249 0.751 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.015 0.985 46 H 0.060 0.940 47 H 0.038 0.962 48 H 0.021 0.979 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.629 13.432 16.829 26.607 hybrid contribution 0.208 -0.283 -1.509 1.549 sum -15.421 13.149 15.321 25.405 Atomic orbital electron populations 1.21814 0.77618 1.04660 1.01614 1.47755 1.08089 1.06351 1.72290 1.22841 0.98429 0.83663 1.04011 1.18645 0.87544 0.83741 0.76212 1.90765 1.70839 1.33470 1.51641 1.19792 0.92525 0.96951 1.06882 1.22898 0.95939 0.96916 0.92744 1.21633 0.93367 0.99050 0.99579 1.21931 1.01670 0.91424 0.92370 1.19834 0.93464 0.96243 1.06282 1.18630 0.82517 0.86963 0.77816 1.90729 1.71985 1.36930 1.45829 1.45755 1.05678 1.20401 1.62675 1.21183 0.91854 0.86581 0.92041 1.21985 1.02056 0.95536 1.00563 1.23308 0.91788 1.02113 0.99271 1.21873 0.97905 0.92297 0.84895 1.44771 1.24039 1.63230 1.02799 1.19376 1.05628 1.29212 0.82980 0.91613 1.25519 0.97349 1.00170 1.02109 1.69996 1.15103 1.41201 1.32794 0.85030 0.77597 0.77138 0.79659 1.20149 1.21468 1.21187 1.21668 0.89380 0.95116 0.92950 1.21146 0.92760 0.96981 0.93958 0.86391 0.93555 0.92538 0.88440 0.89560 0.88346 0.78997 0.79840 0.82803 0.75091 0.92739 0.91129 0.90108 0.87526 0.89699 0.90385 0.98500 0.94043 0.96208 0.97858 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.17 127.77 1.30 2.37 16 2 N -0.61 -9.61 3.27 -875.35 -2.87 -12.48 16 3 C 0.05 0.27 8.60 127.77 1.10 1.37 16 4 C 0.55 14.08 7.52 86.79 0.65 14.74 16 5 O -0.59 -20.93 16.53 -3.85 -0.06 -20.99 16 6 C -0.16 -3.68 5.56 -20.12 -0.11 -3.79 16 7 C -0.07 -0.86 7.62 22.58 0.17 -0.69 16 8 C -0.12 -1.34 10.02 22.20 0.22 -1.12 16 9 C -0.06 -1.00 9.54 22.58 0.22 -0.79 16 10 C -0.16 -4.37 5.87 -20.12 -0.12 -4.49 16 11 C 0.55 19.46 6.99 86.79 0.61 20.07 16 12 O -0.57 -25.12 13.28 -3.88 -0.05 -25.18 16 13 N -0.69 -21.86 5.10 -420.37 -2.14 -24.00 16 14 C 0.17 6.09 0.80 4.80 0.00 6.10 16 15 C -0.14 -4.53 8.41 71.98 0.61 -3.92 16 16 C -0.13 -4.30 6.11 32.15 0.20 -4.10 16 17 C 0.15 7.31 5.88 87.02 0.51 7.82 16 18 N -0.62 -33.42 3.40 -691.03 -2.35 -35.76 16 19 C -0.24 -14.33 10.27 84.03 0.86 -13.47 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 22 N -0.94 -55.00 10.09 21.65 0.22 -54.78 16 23 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 C 0.14 6.42 6.16 86.73 0.53 6.95 16 28 C -0.03 -0.86 9.13 22.79 0.21 -0.66 16 29 H 0.12 0.48 7.83 -2.39 -0.02 0.46 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 -0.05 6.92 -2.39 -0.02 -0.06 16 33 H 0.09 0.55 5.36 -2.39 -0.01 0.54 16 34 H 0.10 0.12 7.98 -2.39 -0.02 0.10 16 35 H 0.19 0.82 4.00 -2.91 -0.01 0.81 16 36 H 0.18 0.47 8.06 -2.92 -0.02 0.45 16 37 H 0.15 2.07 6.39 -2.91 -0.02 2.05 16 38 H 0.41 10.14 6.50 -92.71 -0.60 9.53 16 39 H 0.05 1.97 6.20 -2.39 -0.01 1.96 16 40 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 42 H 0.11 2.74 8.06 -2.39 -0.02 2.72 16 43 H 0.08 2.82 8.05 -2.39 -0.02 2.80 16 44 H 0.08 4.19 5.87 -2.39 -0.01 4.18 16 45 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.25 14.03 8.31 -92.71 -0.77 13.25 16 47 H 0.02 0.97 7.80 -2.39 -0.02 0.95 16 48 H 0.00 0.18 6.68 -2.39 -0.02 0.16 16 49 H 0.11 4.03 7.37 -2.91 -0.02 4.01 16 Total: -1.00 -87.97 386.57 2.59 -85.38 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.38 Total: 15.72 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 7.43 Total: 23.49 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -7.14 Total: -127.03 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.12 Total: -46.17 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -87.97 2.59 -85.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046780550.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.628 kcal (2) G-P(sol) polarization free energy of solvation -87.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.41 seconds