Wall clock time and date at job start Wed Apr 1 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46509 * 120.00241 * 2 1 4 4 C 1.34784 * 120.00164 * 179.97438 * 2 1 3 5 5 O 1.21529 * 119.99547 * 4.33321 * 4 2 1 6 6 C 1.48034 * 120.00000 * 184.33319 * 4 2 1 7 7 C 1.39558 * 119.99602 * 147.85694 * 6 4 2 8 8 C 1.37824 * 119.99503 * 180.02562 * 7 6 4 9 9 C 1.39554 * 120.00090 * 359.97438 * 8 7 6 10 10 C 1.48032 * 119.99898 * 180.02562 * 9 8 7 11 11 O 1.21532 * 120.00163 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00120 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 110.91711 * 56.09523 * 13 12 10 15 15 C 1.55157 * 111.00132 * 179.97438 * 13 12 10 16 16 C 1.54323 * 102.94291 * 82.57186 * 15 13 12 17 17 N 1.47026 * 107.26801 * 22.19318 * 16 15 13 18 18 C 1.36942 * 125.64437 * 181.02360 * 17 16 15 19 19 H 1.07994 * 119.99641 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99811 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00386 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99410 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47161 * 269.99906 * 22 20 18 24 24 H 1.48497 * 109.47293 * 30.00217 * 22 20 18 25 25 H 1.48508 * 109.46763 * 150.00040 * 22 20 18 26 26 C 1.47422 * 108.70371 * 1.28646 * 17 16 15 27 27 C 1.39553 * 120.00108 * 0.27838 * 9 8 7 28 28 C 1.37822 * 119.99930 * 359.44794 * 27 9 8 29 29 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46780 * 300.00165 * 1 2 3 31 31 H 1.08998 * 109.46719 * 60.00030 * 1 2 3 32 32 H 1.08996 * 109.46590 * 274.70049 * 3 2 1 33 33 H 1.08997 * 109.46899 * 34.69719 * 3 2 1 34 34 H 1.09000 * 109.47119 * 154.70058 * 3 2 1 35 35 H 1.07992 * 120.00038 * 0.03475 * 7 6 4 36 36 H 1.07993 * 119.99389 * 179.97438 * 8 7 6 37 37 H 0.97002 * 119.99955 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.46891 * 183.89693 * 14 13 12 39 39 H 1.08996 * 109.47030 * 303.90134 * 14 13 12 40 40 H 1.09000 * 109.46905 * 63.89947 * 14 13 12 41 41 H 1.09000 * 110.72105 * 324.20947 * 15 13 12 42 42 H 1.09002 * 110.72186 * 200.93933 * 15 13 12 43 43 H 1.08991 * 109.88212 * 262.77396 * 16 15 13 44 44 H 1.09004 * 109.87932 * 141.60787 * 16 15 13 45 45 H 0.97001 * 119.99784 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.36448 * 94.48485 * 26 17 16 47 47 H 1.08995 * 110.36687 * 216.80646 * 26 17 16 48 48 H 1.08000 * 120.00300 * 179.72193 * 27 9 8 49 49 H 1.08004 * 120.00061 * 180.27334 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5338 -2.2182 -0.0785 6 6 3.6161 -1.1690 0.0974 7 6 4.2715 -2.2165 0.7461 8 6 5.6468 -2.2178 0.8367 9 6 6.3838 -1.1720 0.2794 10 6 7.8610 -1.1738 0.3762 11 8 8.4319 -2.0862 0.9407 12 7 8.5728 -0.1636 -0.1615 13 6 10.0346 -0.1651 -0.0651 14 6 10.6197 -1.4491 -0.6568 15 6 10.6384 1.0886 -0.7515 16 6 10.5100 2.1744 0.3375 17 7 10.4093 1.4846 1.6320 18 6 10.2616 2.0918 2.8505 19 1 10.1973 1.4938 3.7475 20 6 10.1945 3.4758 2.9326 21 7 10.2723 4.2046 1.8394 22 14 9.9922 4.3040 4.5948 23 1 8.5468 4.4643 4.8954 24 1 10.6265 3.4675 5.6451 25 1 10.6427 5.6387 4.5651 26 6 10.5001 0.0313 1.4015 27 6 5.7281 -0.1219 -0.3647 28 6 4.3532 -0.1234 -0.4603 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.3063 1.6254 -1.0242 33 1 1.6475 2.0059 0.5850 34 1 3.1838 1.1188 0.4392 35 1 3.7011 -3.0260 1.1768 36 1 6.1539 -3.0282 1.3390 37 1 8.1172 0.5645 -0.6124 38 1 11.6999 -1.4570 -0.5109 39 1 10.1794 -2.3125 -0.1581 40 1 10.3967 -1.4924 -1.7228 41 1 10.0619 1.3593 -1.6360 42 1 11.6846 0.9215 -1.0081 43 1 9.6135 2.7694 0.1638 44 1 11.3911 2.8161 0.3269 45 1 10.2258 5.1718 1.8969 46 1 11.5284 -0.3087 1.5244 47 1 9.8390 -0.5030 2.0837 48 1 6.2982 0.6897 -0.7920 49 1 3.8459 0.6871 -0.9625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046782493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:53 Heat of formation + Delta-G solvation = 11.804155 kcal Electronic energy + Delta-G solvation = -30581.216124 eV Core-core repulsion = 26510.192689 eV Total energy + Delta-G solvation = -4071.023435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 19.79 seconds Orbital eigenvalues (eV) -40.84795 -39.98315 -38.36394 -37.08500 -36.00537 -34.03667 -32.49797 -31.69099 -31.06660 -29.85385 -28.71330 -28.28138 -26.91862 -25.69059 -24.39160 -23.55850 -22.80510 -21.12537 -20.20589 -20.15256 -19.05711 -17.99242 -17.52402 -16.74944 -16.70917 -16.17026 -15.62543 -15.18219 -14.87331 -14.75371 -14.65647 -14.57309 -13.99312 -13.80243 -13.75685 -13.52853 -13.30982 -13.07105 -12.88973 -12.73897 -12.60355 -12.40230 -12.18582 -11.99117 -11.92289 -11.79486 -11.68091 -11.18126 -10.93268 -10.89103 -10.44312 -10.39642 -10.24732 -10.10778 -10.04027 -9.68656 -9.38417 -9.27329 -9.11810 -9.04517 -8.70160 -8.55603 -6.82665 -5.73257 -3.05087 0.37161 1.12660 2.31506 2.60253 3.06126 3.35361 3.38541 3.44199 3.46004 3.79345 4.09551 4.47852 4.48872 4.61989 4.73707 4.80436 4.92029 4.99302 5.09327 5.11072 5.17100 5.21796 5.34958 5.35600 5.43613 5.44747 5.49036 5.59476 5.69736 5.72152 5.93191 5.96289 6.00870 6.09287 6.11265 6.13697 6.18594 6.33520 6.37304 6.50409 6.56545 6.66370 6.77588 6.91338 7.07417 7.51461 7.53160 7.77042 7.77788 7.82657 8.23520 8.46614 9.21348 9.81235 10.47068 11.38727 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.003069 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.008676 B = 9121.220061 C =10763.562977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.616 5.616 3 C 0.056 3.944 4 C 0.560 3.440 5 O -0.535 6.535 6 C -0.118 4.118 7 C -0.071 4.071 8 C -0.068 4.068 9 C -0.098 4.098 10 C 0.556 3.444 11 O -0.533 6.533 12 N -0.692 5.692 13 C 0.156 3.844 14 C -0.154 4.154 15 C -0.147 4.147 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.282 1.282 25 H -0.291 1.291 26 C 0.133 3.867 27 C -0.093 4.093 28 C -0.109 4.109 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.398 0.602 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.251 0.749 46 H 0.027 0.973 47 H 0.050 0.950 48 H 0.135 0.865 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.282 -6.432 -9.042 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.349 5.349 3 C -0.086 4.086 4 C 0.349 3.651 5 O -0.413 6.413 6 C -0.121 4.121 7 C -0.090 4.090 8 C -0.087 4.087 9 C -0.102 4.102 10 C 0.343 3.657 11 O -0.411 6.411 12 N -0.342 5.342 13 C 0.070 3.930 14 C -0.212 4.212 15 C -0.186 4.186 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.207 1.207 25 H -0.217 1.217 26 C 0.006 3.994 27 C -0.111 4.111 28 C -0.127 4.127 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.233 0.767 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.153 0.847 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.196 -7.379 -8.592 18.160 hybrid contribution -0.347 1.247 0.652 1.449 sum -14.543 -6.132 -7.940 17.668 Atomic orbital electron populations 1.21719 0.78690 1.04363 1.01508 1.47595 1.07326 1.06357 1.73670 1.22541 0.98944 0.84996 1.02142 1.18482 0.87273 0.83388 0.75953 1.90766 1.69736 1.31024 1.49735 1.19938 0.92538 0.97054 1.02586 1.21157 0.93986 0.96903 0.96922 1.21265 0.92960 0.97782 0.96703 1.20325 0.93886 0.96125 0.99824 1.18153 0.86299 0.82498 0.78793 1.90709 1.71325 1.36277 1.42824 1.45732 1.07200 1.24087 1.57217 1.21553 0.78276 0.95257 0.97924 1.22048 1.00886 0.98279 1.00008 1.23244 1.00355 0.95813 0.99196 1.21158 1.00984 0.90614 0.81999 1.44449 1.86074 0.99225 1.03182 1.19062 1.42319 0.89599 0.83970 0.90607 1.24749 1.02469 0.96043 0.97230 1.69943 1.57382 1.04514 1.25434 0.86141 0.77622 0.78895 0.83274 1.21728 1.20726 1.21710 1.21922 0.97650 0.87137 0.92709 1.21337 0.94336 0.97623 0.97837 1.21778 0.94045 0.97625 0.99298 0.89393 0.91949 0.92024 0.91738 0.90882 0.88558 0.84456 0.83806 0.76673 0.91812 0.90270 0.93182 0.91748 0.90747 0.93644 0.93796 0.93885 0.95511 0.93172 0.84694 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.71 59.85 0.64 1.22 16 2 N -0.62 -5.64 3.27 -190.57 -0.62 -6.27 16 3 C 0.06 0.36 8.85 59.85 0.53 0.89 16 4 C 0.56 6.72 7.44 -12.24 -0.09 6.62 16 5 O -0.54 -8.03 16.09 5.34 0.09 -7.95 16 6 C -0.12 -1.34 5.47 -104.90 -0.57 -1.92 16 7 C -0.07 -0.84 9.58 -39.24 -0.38 -1.21 16 8 C -0.07 -0.87 9.58 -39.24 -0.38 -1.24 16 9 C -0.10 -1.33 5.88 -104.90 -0.62 -1.94 16 10 C 0.56 9.03 7.16 -12.24 -0.09 8.94 16 11 O -0.53 -10.05 13.17 5.34 0.07 -9.98 16 12 N -0.69 -10.87 5.14 -46.39 -0.24 -11.10 16 13 C 0.16 2.68 0.82 -129.55 -0.11 2.57 16 14 C -0.15 -2.31 8.59 37.16 0.32 -1.99 16 15 C -0.15 -2.51 5.97 -24.90 -0.15 -2.65 16 16 C 0.18 4.03 5.36 -3.06 -0.02 4.01 16 17 N -0.60 -15.03 3.39 -169.94 -0.58 -15.60 16 18 C -0.22 -6.12 10.28 -15.06 -0.15 -6.28 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.24 10.31 55.49 0.57 -25.66 16 22 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.13 2.84 6.18 -2.41 -0.01 2.83 16 27 C -0.09 -1.02 9.53 -39.24 -0.37 -1.39 16 28 C -0.11 -1.06 7.42 -39.24 -0.29 -1.36 16 29 H 0.09 0.77 6.91 -51.93 -0.36 0.41 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.31 7.44 -51.93 -0.39 -0.07 16 33 H 0.07 0.38 8.11 -51.93 -0.42 -0.05 16 34 H 0.10 0.70 4.71 -51.93 -0.24 0.45 16 35 H 0.14 1.50 7.95 -52.49 -0.42 1.08 16 36 H 0.14 1.80 7.64 -52.49 -0.40 1.40 16 37 H 0.40 5.46 6.53 -40.82 -0.27 5.19 16 38 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 39 H 0.08 1.31 5.91 -51.93 -0.31 1.00 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 42 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 43 H 0.05 1.12 7.38 -51.93 -0.38 0.73 16 44 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.03 0.58 7.99 -51.93 -0.41 0.16 16 47 H 0.05 1.16 6.89 -51.93 -0.36 0.80 16 48 H 0.14 1.26 6.39 -52.49 -0.34 0.92 16 49 H 0.15 1.03 4.82 -52.48 -0.25 0.78 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -34.14 387.47 -8.74 -42.87 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.01 Total: 4.18 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -1.83 Total: 6.75 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.87 Total: -58.64 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.16 Total: -17.92 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.14 -8.74 -42.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046782493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.677 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.79 seconds