Wall clock time and date at job start Wed Apr 1 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36396 * 120.34898 * 2 1 4 4 C 1.40197 * 119.26438 * 180.25167 * 3 2 1 5 5 C 1.35354 * 119.94534 * 359.73962 * 4 3 2 6 6 N 1.35762 * 120.70391 * 359.97438 * 5 4 3 7 7 C 1.46499 * 119.62393 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47315 * 270.02273 * 7 6 5 9 9 O 1.21277 * 119.99938 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00113 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00357 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.32114 * 34.64645 * 11 10 8 13 13 C 1.53031 * 109.32724 * 154.11528 * 11 10 8 14 14 C 1.54015 * 108.29747 * 176.69621 * 13 11 10 15 15 H 1.09004 * 113.34324 * 168.01056 * 14 13 11 16 16 C 1.57168 * 105.53373 * 292.36173 * 14 13 11 17 17 C 1.55172 * 99.58582 * 74.59959 * 16 14 13 18 18 H 1.09005 * 112.47888 * 162.91420 * 17 16 14 19 19 C 1.52984 * 109.32489 * 275.00477 * 11 10 8 20 20 N 1.47782 * 104.88004 * 40.38809 * 17 16 14 21 21 C 1.36940 * 125.85437 * 153.23409 * 20 17 16 22 22 H 1.08001 * 119.99932 * 0.02562 * 21 20 17 23 23 C 1.38816 * 119.99574 * 179.97438 * 21 20 17 24 24 N 1.31613 * 120.00335 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99555 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47380 * 60.00378 * 25 23 21 27 27 H 1.48500 * 109.47285 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47240 * 300.00470 * 25 23 21 29 29 C 1.47081 * 108.28875 * 333.25459 * 20 17 16 30 30 C 1.34662 * 120.74915 * 0.02562 * 6 5 4 31 31 O 1.22063 * 119.98236 * 179.97438 * 30 6 5 32 32 H 1.09006 * 109.47000 * 270.26352 * 1 2 3 33 33 H 1.09002 * 109.46703 * 30.25929 * 1 2 3 34 34 H 1.08995 * 109.47276 * 150.26071 * 1 2 3 35 35 H 1.08001 * 120.37104 * 359.97438 * 3 2 1 36 36 H 1.07999 * 120.02640 * 179.76273 * 4 3 2 37 37 H 1.07997 * 119.64643 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.46933 * 30.02667 * 7 6 5 39 39 H 1.09000 * 109.46763 * 150.02264 * 7 6 5 40 40 H 0.97004 * 119.99532 * 0.02562 * 10 8 7 41 41 H 1.08998 * 109.57213 * 295.48541 * 13 11 10 42 42 H 1.09002 * 109.57488 * 55.87150 * 13 11 10 43 43 H 1.08999 * 111.96832 * 316.93407 * 16 14 13 44 44 H 1.08999 * 111.20627 * 191.95920 * 16 14 13 45 45 H 1.09000 * 109.53433 * 304.52656 * 19 11 10 46 46 H 1.09007 * 109.53204 * 64.74871 * 19 11 10 47 47 H 0.97005 * 120.00255 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.97654 * 120.46100 * 29 20 17 49 49 H 1.09002 * 109.97776 * 241.73902 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1770 0.0000 4 6 3.5979 1.1505 -0.0054 5 6 4.2512 -0.0349 -0.0051 6 7 3.5635 -1.2054 0.0008 7 6 4.2947 -2.4749 0.0003 8 6 4.5394 -2.9132 -1.4206 9 8 4.1425 -2.2321 -2.3422 10 7 5.2001 -4.0617 -1.6673 11 6 5.4384 -4.4876 -3.0486 12 1 5.6041 -3.6098 -3.6732 13 6 6.6804 -5.3803 -3.0963 14 6 6.8607 -5.8813 -4.5415 15 1 7.8279 -6.3521 -4.7179 16 6 5.6473 -6.8442 -4.8076 17 6 4.5155 -5.7950 -4.9690 18 1 3.6297 -6.2084 -5.4515 19 6 4.2154 -5.2502 -3.5615 20 7 5.1237 -4.6978 -5.7501 21 6 4.4526 -3.8260 -6.5655 22 1 3.3818 -3.9085 -6.6793 23 6 5.1487 -2.8357 -7.2450 24 7 6.4535 -2.7349 -7.1060 25 14 4.2334 -1.6470 -8.3579 26 1 3.2286 -0.8973 -7.5618 27 1 5.1975 -0.6933 -8.9631 28 1 3.5464 -2.4055 -9.4340 29 6 6.5734 -4.7030 -5.5018 30 6 2.2170 -1.2128 0.0060 31 8 1.6128 -2.2734 0.0108 32 1 -0.3633 0.0047 1.0277 33 1 -0.3633 0.8877 -0.5179 34 1 -0.3633 -0.8923 -0.5097 35 1 1.6680 2.1191 -0.0004 36 1 4.1559 2.0752 -0.0093 37 1 5.3311 -0.0497 -0.0097 38 1 5.2495 -2.3445 0.5098 39 1 3.7071 -3.2328 0.5183 40 1 5.5179 -4.6063 -0.9301 41 1 7.5579 -4.8008 -2.8095 42 1 6.5541 -6.2186 -2.4111 43 1 5.4567 -7.5036 -3.9608 44 1 5.7906 -7.4148 -5.7252 45 1 3.9945 -6.0793 -2.8892 46 1 3.3587 -4.5776 -3.6060 47 1 6.9400 -2.0431 -7.5811 48 1 7.1111 -4.8467 -6.4390 49 1 6.8754 -3.7634 -5.0392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047069564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:42 Heat of formation + Delta-G solvation = 0.466983 kcal Electronic energy + Delta-G solvation = -31560.784173 eV Core-core repulsion = 27489.269122 eV Total energy + Delta-G solvation = -4071.515052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.54895 -39.96087 -38.54712 -36.89211 -35.23449 -34.52117 -32.81086 -31.35284 -30.65680 -29.97980 -28.70131 -27.59482 -27.22306 -25.31542 -23.36172 -23.09572 -22.51435 -21.63599 -20.26683 -19.39736 -18.76721 -17.55617 -17.45131 -17.29389 -16.90995 -16.32016 -15.66057 -15.30030 -14.93594 -14.58014 -14.45043 -14.36084 -13.92331 -13.71006 -13.50444 -13.06109 -12.90950 -12.78767 -12.72336 -12.39979 -12.20916 -11.98286 -11.90533 -11.77617 -11.71214 -11.60318 -11.53877 -11.22048 -10.70572 -10.64330 -10.55180 -10.26779 -9.97325 -9.96670 -9.86754 -9.69379 -9.64497 -9.41093 -9.28288 -8.62716 -8.51199 -7.88293 -6.75635 -5.62067 -2.93905 0.76492 1.87461 2.41108 2.78652 3.32187 3.49150 3.52523 3.55516 3.69902 4.43243 4.48641 4.59360 4.73028 4.77365 4.90795 5.05438 5.11503 5.18251 5.19541 5.23196 5.44379 5.54625 5.59239 5.64569 5.65362 5.75703 5.87162 5.89662 6.01391 6.04093 6.07831 6.10227 6.12984 6.13719 6.23896 6.29396 6.45007 6.56549 6.63335 6.67107 6.86180 6.88422 6.99883 7.01625 7.06112 7.61622 7.64943 7.72241 7.89421 8.02317 8.33274 8.45177 9.31362 9.91524 10.57271 11.50031 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.003723 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.986219 B = 7519.046020 C = 8961.142843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.209 4.209 3 C -0.023 4.023 4 C -0.228 4.228 5 C 0.137 3.863 6 N -0.478 5.478 7 C 0.071 3.929 8 C 0.492 3.508 9 O -0.507 6.507 10 N -0.723 5.723 11 C 0.147 3.853 12 H 0.115 0.885 13 C -0.111 4.111 14 C -0.118 4.118 15 H 0.081 0.919 16 C -0.130 4.130 17 C 0.157 3.843 18 H 0.064 0.936 19 C -0.136 4.136 20 N -0.595 5.595 21 C -0.220 4.220 22 H 0.075 0.925 23 C -0.006 4.006 24 N -0.925 5.925 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.182 3.818 30 C 0.524 3.476 31 O -0.548 6.548 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.391 0.609 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.058 0.942 47 H 0.251 0.749 48 H 0.045 0.955 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 1.610 19.548 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.213 4.213 3 C -0.045 4.045 4 C -0.251 4.251 5 C 0.011 3.989 6 N -0.188 5.188 7 C -0.055 4.055 8 C 0.275 3.725 9 O -0.381 6.381 10 N -0.375 5.375 11 C 0.044 3.956 12 H 0.133 0.867 13 C -0.149 4.149 14 C -0.137 4.137 15 H 0.100 0.900 16 C -0.169 4.169 17 C 0.048 3.952 18 H 0.082 0.918 19 C -0.177 4.177 20 N -0.319 5.319 21 C -0.348 4.348 22 H 0.093 0.907 23 C -0.202 4.202 24 N -0.573 5.573 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.057 3.943 30 C 0.326 3.674 31 O -0.430 6.430 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.224 0.776 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.702 1.616 18.697 18.780 hybrid contribution -0.113 0.538 -0.240 0.600 sum -0.815 2.154 18.457 18.600 Atomic orbital electron populations 1.20428 0.89192 1.03072 1.01958 1.20756 0.97836 0.91940 1.10750 1.21298 0.93919 0.98019 0.91227 1.20575 0.94635 0.97192 1.12731 1.21877 0.98379 0.84801 0.93878 1.44964 1.07987 1.06464 1.59349 1.21825 0.99103 0.87422 0.97182 1.20559 0.79166 0.82091 0.90712 1.90867 1.48440 1.53545 1.45243 1.46141 1.58237 1.23199 1.09888 1.21247 0.94210 0.99860 0.80250 0.86722 1.21963 0.96860 0.98392 0.97674 1.23160 0.97555 0.98377 0.94655 0.90028 1.23307 0.96670 0.96650 1.00251 1.21487 0.94793 0.88865 0.90025 0.91814 1.22608 0.97852 0.98693 0.98542 1.44595 1.02722 1.32925 1.51677 1.18977 0.91271 1.06669 1.17885 0.90703 1.24705 0.95752 0.99118 1.00592 1.69924 1.05482 1.35581 1.46287 0.86248 0.78529 0.80920 0.80441 1.21186 1.21689 1.21289 1.21265 0.84970 0.92792 0.95245 1.16903 0.80374 0.91240 0.78909 1.90931 1.66435 1.32788 1.52817 0.91606 0.91567 0.90854 0.84971 0.83759 0.82324 0.86413 0.85603 0.77591 0.92296 0.92526 0.92040 0.91908 0.93785 0.92303 0.93920 0.93682 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.81 36.01 0.35 -0.70 16 2 C -0.21 -2.84 5.90 -104.42 -0.62 -3.46 16 3 C -0.02 -0.25 9.75 -39.51 -0.39 -0.63 16 4 C -0.23 -2.22 10.01 -39.87 -0.40 -2.62 16 5 C 0.14 1.45 10.28 -16.84 -0.17 1.27 16 6 N -0.48 -6.38 2.07 -121.07 -0.25 -6.64 16 7 C 0.07 0.81 5.81 -5.20 -0.03 0.78 16 8 C 0.49 8.04 7.86 -10.99 -0.09 7.95 16 9 O -0.51 -11.43 16.08 5.56 0.09 -11.34 16 10 N -0.72 -10.46 5.06 -53.80 -0.27 -10.73 16 11 C 0.15 2.69 2.08 -67.92 -0.14 2.55 16 12 H 0.11 2.77 5.33 -51.93 -0.28 2.50 16 13 C -0.11 -1.70 5.02 -26.19 -0.13 -1.83 16 14 C -0.12 -2.09 4.34 -86.93 -0.38 -2.47 16 15 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 16 C -0.13 -2.25 6.28 -23.32 -0.15 -2.39 16 17 C 0.16 3.28 4.25 -65.62 -0.28 3.00 16 18 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 19 C -0.14 -2.64 5.27 -26.28 -0.14 -2.78 16 20 N -0.59 -15.19 2.45 -161.37 -0.40 -15.59 16 21 C -0.22 -6.34 10.29 -15.06 -0.15 -6.50 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -27.69 10.35 55.49 0.57 -27.12 16 25 Si 0.91 23.40 29.55 -169.99 -5.02 18.38 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 C 0.18 4.34 4.11 -2.83 -0.01 4.33 16 30 C 0.52 8.47 7.39 -15.45 -0.11 8.36 16 31 O -0.55 -10.57 15.76 4.86 0.08 -10.50 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.16 1.14 8.04 -52.49 -0.42 0.72 16 38 H 0.12 0.77 8.01 -51.93 -0.42 0.35 16 39 H 0.13 1.37 7.39 -51.93 -0.38 0.99 16 40 H 0.39 3.94 8.61 -40.82 -0.35 3.59 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.71 7.97 -51.93 -0.41 0.30 16 43 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 46 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.05 1.21 7.40 -51.93 -0.38 0.82 16 49 H 0.05 1.21 6.18 -51.93 -0.32 0.89 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -38.48 388.09 -9.81 -48.29 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.53 Total: 4.82 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.93 Total: 4.57 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.34 Total: -60.07 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.17 Total: -21.84 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.48 -9.81 -48.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047069564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.762 kcal (2) G-P(sol) polarization free energy of solvation -38.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds