Wall clock time and date at job start Wed Apr 1 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36396 * 120.34898 * 2 1 4 4 C 1.40197 * 119.26438 * 180.25167 * 3 2 1 5 5 C 1.35354 * 119.94534 * 359.73962 * 4 3 2 6 6 N 1.35762 * 120.70391 * 359.97438 * 5 4 3 7 7 C 1.46499 * 119.62393 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47315 * 270.02273 * 7 6 5 9 9 O 1.21277 * 119.99938 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00113 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00357 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.32114 * 34.64645 * 11 10 8 13 13 C 1.53031 * 109.32724 * 154.11528 * 11 10 8 14 14 C 1.54015 * 108.29747 * 176.69621 * 13 11 10 15 15 H 1.09004 * 113.34324 * 168.01056 * 14 13 11 16 16 C 1.57168 * 105.53373 * 292.36173 * 14 13 11 17 17 C 1.55172 * 99.58582 * 74.59959 * 16 14 13 18 18 H 1.09005 * 112.47888 * 162.91420 * 17 16 14 19 19 C 1.52984 * 109.32489 * 275.00477 * 11 10 8 20 20 N 1.47782 * 104.88004 * 40.38809 * 17 16 14 21 21 C 1.36940 * 125.85437 * 153.23409 * 20 17 16 22 22 H 1.08001 * 119.99932 * 0.02562 * 21 20 17 23 23 C 1.38816 * 119.99574 * 179.97438 * 21 20 17 24 24 N 1.31613 * 120.00335 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99555 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47380 * 60.00378 * 25 23 21 27 27 H 1.48500 * 109.47285 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47240 * 300.00470 * 25 23 21 29 29 C 1.47081 * 108.28875 * 333.25459 * 20 17 16 30 30 C 1.34662 * 120.74915 * 0.02562 * 6 5 4 31 31 O 1.22063 * 119.98236 * 179.97438 * 30 6 5 32 32 H 1.09006 * 109.47000 * 270.26352 * 1 2 3 33 33 H 1.09002 * 109.46703 * 30.25929 * 1 2 3 34 34 H 1.08995 * 109.47276 * 150.26071 * 1 2 3 35 35 H 1.08001 * 120.37104 * 359.97438 * 3 2 1 36 36 H 1.07999 * 120.02640 * 179.76273 * 4 3 2 37 37 H 1.07997 * 119.64643 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.46933 * 30.02667 * 7 6 5 39 39 H 1.09000 * 109.46763 * 150.02264 * 7 6 5 40 40 H 0.97004 * 119.99532 * 0.02562 * 10 8 7 41 41 H 1.08998 * 109.57213 * 295.48541 * 13 11 10 42 42 H 1.09002 * 109.57488 * 55.87150 * 13 11 10 43 43 H 1.08999 * 111.96832 * 316.93407 * 16 14 13 44 44 H 1.08999 * 111.20627 * 191.95920 * 16 14 13 45 45 H 1.09000 * 109.53433 * 304.52656 * 19 11 10 46 46 H 1.09007 * 109.53204 * 64.74871 * 19 11 10 47 47 H 0.97005 * 120.00255 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.97654 * 120.46100 * 29 20 17 49 49 H 1.09002 * 109.97776 * 241.73902 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1770 0.0000 4 6 3.5979 1.1505 -0.0054 5 6 4.2512 -0.0349 -0.0051 6 7 3.5635 -1.2054 0.0008 7 6 4.2947 -2.4749 0.0003 8 6 4.5394 -2.9132 -1.4206 9 8 4.1425 -2.2321 -2.3422 10 7 5.2001 -4.0617 -1.6673 11 6 5.4384 -4.4876 -3.0486 12 1 5.6041 -3.6098 -3.6732 13 6 6.6804 -5.3803 -3.0963 14 6 6.8607 -5.8813 -4.5415 15 1 7.8279 -6.3521 -4.7179 16 6 5.6473 -6.8442 -4.8076 17 6 4.5155 -5.7950 -4.9690 18 1 3.6297 -6.2084 -5.4515 19 6 4.2154 -5.2502 -3.5615 20 7 5.1237 -4.6978 -5.7501 21 6 4.4526 -3.8260 -6.5655 22 1 3.3818 -3.9085 -6.6793 23 6 5.1487 -2.8357 -7.2450 24 7 6.4535 -2.7349 -7.1060 25 14 4.2334 -1.6470 -8.3579 26 1 3.2286 -0.8973 -7.5618 27 1 5.1975 -0.6933 -8.9631 28 1 3.5464 -2.4055 -9.4340 29 6 6.5734 -4.7030 -5.5018 30 6 2.2170 -1.2128 0.0060 31 8 1.6128 -2.2734 0.0108 32 1 -0.3633 0.0047 1.0277 33 1 -0.3633 0.8877 -0.5179 34 1 -0.3633 -0.8923 -0.5097 35 1 1.6680 2.1191 -0.0004 36 1 4.1559 2.0752 -0.0093 37 1 5.3311 -0.0497 -0.0097 38 1 5.2495 -2.3445 0.5098 39 1 3.7071 -3.2328 0.5183 40 1 5.5179 -4.6063 -0.9301 41 1 7.5579 -4.8008 -2.8095 42 1 6.5541 -6.2186 -2.4111 43 1 5.4567 -7.5036 -3.9608 44 1 5.7906 -7.4148 -5.7252 45 1 3.9945 -6.0793 -2.8892 46 1 3.3587 -4.5776 -3.6060 47 1 6.9400 -2.0431 -7.5811 48 1 7.1111 -4.8467 -6.4390 49 1 6.8754 -3.7634 -5.0392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047069564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:41 Heat of formation + Delta-G solvation = -26.909394 kcal Electronic energy + Delta-G solvation = -31561.971302 eV Core-core repulsion = 27489.269122 eV Total energy + Delta-G solvation = -4072.702180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.57048 -41.43473 -39.99151 -37.98116 -36.31453 -35.98984 -34.73047 -32.44519 -32.25770 -31.49475 -30.29326 -28.79096 -28.12750 -27.24348 -24.96659 -24.42773 -23.42840 -22.93847 -21.63574 -21.18971 -20.25381 -19.00223 -18.53348 -18.53133 -18.34192 -17.50043 -16.94569 -16.70414 -16.44793 -16.20338 -15.87391 -15.52572 -15.34535 -15.09177 -14.74916 -14.52350 -14.20022 -13.90117 -13.84023 -13.73883 -13.48077 -13.42655 -13.26774 -13.20123 -13.07923 -13.02854 -12.95530 -12.65206 -12.56886 -12.48812 -12.20378 -11.94181 -11.67622 -11.53761 -11.25718 -11.13345 -11.08200 -10.99531 -10.70712 -10.59152 -10.04152 -8.86070 -8.84810 -7.86341 -5.17667 -0.13309 0.92029 1.35051 1.39830 1.44760 1.46738 1.53562 2.18310 2.45660 2.69374 3.31433 3.57351 3.62402 3.66595 3.74532 3.76652 3.91597 3.97616 4.09639 4.13506 4.21106 4.22501 4.34587 4.35967 4.39797 4.49616 4.57179 4.62890 4.73393 4.76686 4.78590 4.81967 4.89058 5.07798 5.15939 5.17142 5.24168 5.27183 5.30509 5.36579 5.39771 5.45048 5.47477 5.61857 5.64490 5.73658 5.82498 6.02969 6.21119 6.53823 6.94876 7.12376 7.28282 7.80055 8.43781 9.23281 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.003723 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.986219 B = 7519.046020 C = 8961.142843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.254 4.254 3 C -0.005 4.005 4 C -0.228 4.228 5 C 0.125 3.875 6 N -0.482 5.482 7 C 0.078 3.922 8 C 0.486 3.514 9 O -0.581 6.581 10 N -0.704 5.704 11 C 0.155 3.845 12 H 0.048 0.952 13 C -0.098 4.098 14 C -0.106 4.106 15 H 0.113 0.887 16 C -0.111 4.111 17 C 0.139 3.861 18 H 0.054 0.946 19 C -0.124 4.124 20 N -0.614 5.614 21 C -0.233 4.233 22 H 0.063 0.937 23 C -0.060 4.060 24 N -0.945 5.945 25 Si 0.964 3.036 26 H -0.293 1.293 27 H -0.286 1.286 28 H -0.274 1.274 29 C 0.190 3.810 30 C 0.500 3.500 31 O -0.603 6.603 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.166 0.834 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.179 0.821 39 H 0.133 0.867 40 H 0.419 0.581 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.005 0.995 47 H 0.245 0.755 48 H 0.004 0.996 49 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 0.977 22.435 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.258 4.258 3 C -0.027 4.027 4 C -0.250 4.250 5 C 0.000 4.000 6 N -0.190 5.190 7 C -0.047 4.047 8 C 0.271 3.729 9 O -0.460 6.460 10 N -0.356 5.356 11 C 0.050 3.950 12 H 0.066 0.934 13 C -0.135 4.135 14 C -0.126 4.126 15 H 0.131 0.869 16 C -0.149 4.149 17 C 0.032 3.968 18 H 0.072 0.928 19 C -0.165 4.165 20 N -0.339 5.339 21 C -0.363 4.363 22 H 0.081 0.919 23 C -0.253 4.253 24 N -0.595 5.595 25 Si 0.793 3.207 26 H -0.221 1.221 27 H -0.211 1.211 28 H -0.199 1.199 29 C 0.066 3.934 30 C 0.305 3.695 31 O -0.490 6.490 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.183 0.817 36 H 0.199 0.801 37 H 0.214 0.786 38 H 0.196 0.804 39 H 0.150 0.850 40 H 0.257 0.743 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.024 0.976 47 H 0.054 0.946 48 H 0.022 0.978 49 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 1.236 0.942 21.645 21.701 hybrid contribution -0.707 0.821 -1.135 1.569 sum 0.529 1.762 20.510 20.593 Atomic orbital electron populations 1.20397 0.88828 1.02336 1.02611 1.20968 0.98630 0.92282 1.13934 1.21757 0.94708 0.98230 0.87966 1.21148 0.94487 0.98495 1.10900 1.22668 1.00234 0.84161 0.92980 1.45071 1.07522 1.08040 1.58417 1.22038 1.01803 0.87146 0.93731 1.21492 0.77636 0.81612 0.92125 1.90843 1.51347 1.55819 1.47981 1.45859 1.57373 1.23079 1.09336 1.20837 0.95197 0.97735 0.81215 0.93402 1.21914 0.95304 0.99464 0.96845 1.23107 0.99285 0.95707 0.94465 0.86908 1.23269 0.93765 0.95637 1.02265 1.21830 0.96056 0.89006 0.89931 0.92797 1.22445 0.96572 0.98854 0.98612 1.44818 1.03848 1.33552 1.51652 1.19219 0.91204 1.07658 1.18213 0.91859 1.25420 0.96668 1.00820 1.02432 1.70132 1.06402 1.35882 1.47038 0.85370 0.77329 0.79055 0.78952 1.22055 1.21138 1.19949 1.21022 0.83588 0.94153 0.94666 1.17427 0.81512 0.91512 0.79056 1.90872 1.67677 1.34399 1.56102 0.90372 0.89479 0.94219 0.81657 0.80081 0.78599 0.80360 0.84964 0.74276 0.91016 0.87324 0.87292 0.91992 0.89757 0.97575 0.94588 0.97817 0.97569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.09 9.81 71.24 0.70 -1.40 16 2 C -0.25 -7.05 5.90 -19.73 -0.12 -7.16 16 3 C -0.01 -0.10 9.75 22.32 0.22 0.12 16 4 C -0.23 -3.79 10.01 22.08 0.22 -3.57 16 5 C 0.13 2.35 10.28 83.42 0.86 3.20 16 6 N -0.48 -12.54 2.07 -655.07 -1.36 -13.90 16 7 C 0.08 1.64 5.81 85.63 0.50 2.13 16 8 C 0.49 15.84 7.86 87.66 0.69 16.53 16 9 O -0.58 -27.70 16.08 -3.02 -0.05 -27.75 16 10 N -0.70 -19.11 5.06 -442.51 -2.24 -21.35 16 11 C 0.15 5.57 2.08 45.00 0.09 5.66 16 12 H 0.05 2.44 5.33 -2.39 -0.01 2.42 16 13 C -0.10 -2.62 5.02 30.95 0.16 -2.46 16 14 C -0.11 -3.50 4.34 -8.40 -0.04 -3.54 16 15 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 16 C -0.11 -3.48 6.28 32.81 0.21 -3.27 16 17 C 0.14 5.84 4.25 45.79 0.19 6.04 16 18 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 19 C -0.12 -4.83 5.27 30.89 0.16 -4.67 16 20 N -0.61 -32.93 2.45 -664.47 -1.63 -34.56 16 21 C -0.23 -14.32 10.29 84.03 0.87 -13.46 16 22 H 0.06 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.06 -3.71 5.49 84.86 0.47 -3.25 16 24 N -0.95 -59.72 10.35 21.65 0.22 -59.50 16 25 Si 0.96 50.34 29.55 68.60 2.03 52.36 16 26 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 27 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 28 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 29 C 0.19 9.42 4.11 86.85 0.36 9.78 16 30 C 0.50 16.80 7.39 84.82 0.63 17.42 16 31 O -0.60 -24.92 15.76 -5.52 -0.09 -25.01 16 32 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 34 H 0.04 1.21 7.62 -2.39 -0.02 1.20 16 35 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.20 2.03 8.04 -2.91 -0.02 2.01 16 38 H 0.18 1.49 8.01 -2.39 -0.02 1.47 16 39 H 0.13 2.69 7.39 -2.39 -0.02 2.68 16 40 H 0.42 6.66 8.61 -92.70 -0.80 5.86 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.11 1.93 7.97 -2.39 -0.02 1.91 16 43 H 0.11 2.47 7.75 -2.39 -0.02 2.45 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 2.58 8.00 -2.39 -0.02 2.56 16 46 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 47 H 0.24 15.08 8.31 -92.70 -0.77 14.31 16 48 H 0.00 0.20 7.40 -2.39 -0.02 0.19 16 49 H 0.01 0.35 6.18 -2.39 -0.01 0.34 16 Total: -1.00 -98.89 388.09 3.21 -95.68 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.17 Total: 15.91 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 6.16 Total: 18.11 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -5.00 Total: -129.31 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.14 Total: -52.76 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.03 Total: 52.36 kcal Total: -98.89 3.21 -95.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047069564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.774 kcal (2) G-P(sol) polarization free energy of solvation -98.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds