Wall clock time and date at job start Wed Apr 1 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35649 * 116.99459 * 2 1 4 4 C 1.39341 * 120.54175 * 0.27717 * 3 2 1 5 5 C 1.38312 * 118.43447 * 180.25967 * 4 3 2 6 6 C 1.50701 * 120.27451 * 179.70767 * 5 4 3 7 7 C 1.38768 * 119.44473 * 359.72746 * 5 4 3 8 8 N 1.31371 * 121.06579 * 0.02562 * 7 5 4 9 9 C 1.32855 * 121.70059 * 359.97438 * 8 7 5 10 10 C 1.47830 * 119.78645 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00283 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99918 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00369 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.17660 * 48.97893 * 13 12 10 15 15 C 1.53033 * 109.32468 * 289.42765 * 13 12 10 16 16 C 1.53968 * 108.82600 * 295.14105 * 15 13 12 17 17 H 1.08993 * 112.99823 * 169.00052 * 16 15 13 18 18 C 1.55428 * 106.41608 * 293.82067 * 16 15 13 19 19 C 1.55167 * 100.35499 * 73.37328 * 18 16 15 20 20 H 1.09003 * 113.04847 * 162.99120 * 19 18 16 21 21 C 1.52986 * 109.32839 * 168.53804 * 13 12 10 22 22 N 1.47788 * 104.25256 * 40.56083 * 19 18 16 23 23 C 1.36939 * 125.85734 * 153.51121 * 22 19 18 24 24 H 1.07994 * 120.00356 * 24.26711 * 23 22 19 25 25 C 1.38814 * 119.99457 * 204.26862 * 23 22 19 26 26 N 1.31621 * 119.99682 * 199.21303 * 25 23 22 27 27 Si 1.86804 * 120.00340 * 19.21675 * 25 23 22 28 28 H 1.48492 * 109.47024 * 275.09760 * 27 25 23 29 29 H 1.48499 * 109.46981 * 35.09555 * 27 25 23 30 30 H 1.48496 * 109.47214 * 155.09784 * 27 25 23 31 31 C 1.47077 * 108.28476 * 333.76681 * 22 19 18 32 32 H 1.09002 * 109.47578 * 299.99129 * 1 2 3 33 33 H 1.08999 * 109.47730 * 59.99398 * 1 2 3 34 34 H 1.09006 * 109.46870 * 179.97438 * 1 2 3 35 35 H 1.07994 * 120.78712 * 359.96905 * 4 3 2 36 36 H 1.09003 * 109.46890 * 270.02173 * 6 5 4 37 37 H 1.09002 * 109.47215 * 30.02220 * 6 5 4 38 38 H 1.09000 * 109.46647 * 150.02207 * 6 5 4 39 39 H 1.08000 * 119.46396 * 180.02562 * 7 5 4 40 40 H 0.97007 * 120.00009 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.57868 * 54.94093 * 15 13 12 42 42 H 1.09004 * 109.57926 * 175.20360 * 15 13 12 43 43 H 1.09001 * 111.23204 * 315.59959 * 18 16 15 44 44 H 1.09000 * 111.23917 * 191.16046 * 18 16 15 45 45 H 1.09003 * 109.53063 * 305.28999 * 21 13 12 46 46 H 1.09004 * 109.53446 * 185.06629 * 21 13 12 47 47 H 0.97001 * 120.00442 * 4.84532 * 26 25 23 48 48 H 1.09001 * 109.97878 * 120.23182 * 31 22 19 49 49 H 1.09000 * 109.98208 * 241.51323 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3844 0.0058 5 6 1.9695 3.5929 0.0000 6 6 1.2018 4.8897 -0.0007 7 6 3.3571 3.6012 -0.0055 8 7 4.0418 2.4800 -0.0059 9 6 3.4409 1.2951 -0.0005 10 6 4.2530 0.0599 -0.0006 11 8 3.7074 -1.0264 0.0039 12 7 5.5985 0.1380 -0.0056 13 6 6.4034 -1.0860 -0.0051 14 1 6.0328 -1.7585 -0.7787 15 6 6.2852 -1.7693 1.3591 16 6 6.9106 -0.8551 2.4286 17 1 6.6970 -1.1822 3.4461 18 6 8.4312 -0.7875 2.1139 19 6 8.4156 0.1214 0.8564 20 1 9.3919 0.5482 0.6262 21 6 7.8628 -0.7325 -0.2981 22 7 7.4066 1.1555 1.1674 23 6 7.3736 2.4242 0.6531 24 1 7.8468 2.6354 -0.2944 25 6 6.7317 3.4389 1.3499 26 7 6.3644 4.5368 0.7237 27 14 6.3894 3.2463 3.1761 28 1 5.1179 2.5031 3.3657 29 1 7.5015 2.4948 3.8116 30 1 6.2768 4.5878 3.8029 31 6 6.4477 0.5902 2.1286 32 1 -0.3634 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2173 2.3528 0.0099 36 1 1.0126 5.1993 -1.0285 37 1 0.2529 4.7505 0.5174 38 1 1.7846 5.6571 0.5086 39 1 3.8827 4.5447 -0.0096 40 1 6.0340 1.0048 -0.0095 41 1 5.2341 -1.9388 1.5929 42 1 6.8128 -2.7229 1.3370 43 1 8.8307 -1.7749 1.8824 44 1 8.9831 -0.3223 2.9306 45 1 7.9212 -0.1685 -1.2291 46 1 8.4485 -1.6474 -0.3877 47 1 6.4783 4.6085 -0.2370 48 1 6.4468 1.1807 3.0448 49 1 5.4484 0.5761 1.6934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047089328.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:31 Heat of formation + Delta-G solvation = 49.338981 kcal Electronic energy + Delta-G solvation = -33624.274027 eV Core-core repulsion = 29554.878224 eV Total energy + Delta-G solvation = -4069.395803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.98305 -40.17507 -37.90351 -37.62180 -33.68851 -33.48203 -32.90103 -30.99251 -30.75222 -30.46409 -28.37691 -27.75408 -26.70569 -25.04755 -23.23066 -22.92849 -22.39284 -21.42653 -20.25183 -19.56111 -18.73410 -17.66152 -17.32273 -17.06222 -16.73049 -15.93080 -15.70300 -15.06365 -14.57716 -14.32893 -14.14750 -13.84400 -13.76767 -13.50363 -13.36772 -13.20665 -12.99749 -12.65051 -12.38687 -12.28488 -12.16048 -11.97401 -11.96440 -11.90495 -11.73171 -11.33863 -11.24923 -11.20095 -10.96987 -10.76629 -10.71982 -10.20641 -9.83583 -9.60686 -9.38020 -9.20106 -9.18945 -9.05593 -8.80267 -8.42806 -8.02280 -7.55588 -6.88946 -6.27331 -3.26672 1.13052 1.68385 3.40251 3.44443 3.50943 3.56006 3.72521 3.98410 4.44479 4.64708 4.73931 4.93216 4.95482 5.06989 5.14056 5.16324 5.17050 5.25209 5.29124 5.38314 5.42853 5.48635 5.52217 5.65718 5.70004 5.74970 5.78677 5.81871 5.95768 5.96892 6.07731 6.09647 6.16918 6.21541 6.29523 6.41506 6.44164 6.47920 6.54656 6.66759 6.73468 6.84848 6.87361 6.92708 7.04947 7.47485 7.50177 7.84589 8.38174 8.42312 8.79588 9.07204 9.28998 9.60674 10.29694 11.18641 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.006252 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.153026 B = 4477.187876 C = 6099.737454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.275 6.275 3 C 0.123 3.877 4 C -0.188 4.188 5 C -0.090 4.090 6 C -0.110 4.110 7 C 0.078 3.922 8 N -0.368 5.368 9 C 0.035 3.965 10 C 0.554 3.446 11 O -0.550 6.550 12 N -0.684 5.684 13 C 0.159 3.841 14 H 0.064 0.936 15 C -0.123 4.123 16 C -0.105 4.105 17 H 0.080 0.920 18 C -0.129 4.129 19 C 0.146 3.854 20 H 0.072 0.928 21 C -0.138 4.138 22 N -0.597 5.597 23 C -0.342 4.342 24 H 0.075 0.925 25 C 0.027 3.973 26 N -0.904 5.904 27 Si 1.052 2.948 28 H -0.298 1.298 29 H -0.294 1.294 30 H -0.305 1.305 31 C 0.099 3.901 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.175 0.825 40 H 0.447 0.553 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.265 0.735 48 H 0.012 0.988 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 -5.496 -1.369 9.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.185 6.185 3 C 0.073 3.927 4 C -0.214 4.214 5 C -0.092 4.092 6 C -0.168 4.168 7 C -0.083 4.083 8 N -0.078 5.078 9 C -0.104 4.104 10 C 0.339 3.661 11 O -0.429 6.429 12 N -0.353 5.353 13 C 0.053 3.947 14 H 0.082 0.918 15 C -0.162 4.162 16 C -0.124 4.124 17 H 0.098 0.902 18 C -0.168 4.168 19 C 0.039 3.961 20 H 0.090 0.910 21 C -0.178 4.178 22 N -0.325 5.325 23 C -0.468 4.468 24 H 0.093 0.907 25 C -0.177 4.177 26 N -0.542 5.542 27 Si 0.887 3.113 28 H -0.226 1.226 29 H -0.222 1.222 30 H -0.233 1.233 31 C -0.026 4.026 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.192 0.808 40 H 0.305 0.695 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.029 0.971 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.027 -5.512 -0.128 9.738 hybrid contribution -0.447 -0.317 -1.051 1.185 sum -8.474 -5.829 -1.178 10.352 Atomic orbital electron populations 1.23102 0.79689 1.03879 1.00801 1.86415 1.19945 1.24989 1.87144 1.20096 0.92464 0.85203 0.94978 1.21448 1.00136 0.91479 1.08320 1.21100 0.95729 0.95373 0.97009 1.20759 0.99477 0.93982 1.02551 1.23055 0.89664 0.97657 0.97939 1.68020 1.38234 0.96550 1.04953 1.20994 0.88089 0.93929 1.07370 1.17782 0.83271 0.87038 0.78013 1.90709 1.72756 1.27625 1.51833 1.47748 1.04788 1.13523 1.69211 1.20638 0.90958 0.86674 0.96422 0.91845 1.22083 1.01542 0.97475 0.95074 1.22533 0.95736 0.96213 0.97887 0.90185 1.23024 0.95725 0.99120 0.98916 1.21722 0.93195 0.89155 0.92070 0.90957 1.22470 0.94629 1.00004 1.00708 1.45265 1.24864 1.11015 1.51354 1.19915 1.39412 0.83677 1.03778 0.90699 1.25601 0.96098 0.91844 1.04197 1.70771 1.44533 1.28114 1.10774 0.83932 0.75962 0.73180 0.78204 1.22631 1.22212 1.23315 1.22477 0.96659 0.90931 0.92495 0.92961 0.93006 0.88244 0.84526 0.90752 0.91650 0.90403 0.80850 0.69479 0.91030 0.91801 0.91672 0.91910 0.91913 0.91624 0.92474 0.97070 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.83 101.05 0.99 1.24 16 2 O -0.27 -4.90 8.56 -40.60 -0.35 -5.25 16 3 C 0.12 2.30 6.71 -38.56 -0.26 2.05 16 4 C -0.19 -2.88 8.80 -39.14 -0.34 -3.23 16 5 C -0.09 -1.41 5.90 -104.40 -0.62 -2.03 16 6 C -0.11 -1.26 10.03 36.01 0.36 -0.90 16 7 C 0.08 1.53 10.80 -17.55 -0.19 1.34 16 8 N -0.37 -8.19 9.08 -9.71 -0.09 -8.27 16 9 C 0.04 0.77 6.71 -82.88 -0.56 0.22 16 10 C 0.55 12.57 6.13 -12.34 -0.08 12.50 16 11 O -0.55 -12.90 13.93 -16.64 -0.23 -13.14 16 12 N -0.68 -14.97 2.76 -54.75 -0.15 -15.12 16 13 C 0.16 3.00 2.71 -67.92 -0.18 2.82 16 14 H 0.06 1.19 8.00 -51.93 -0.42 0.77 16 15 C -0.12 -2.18 5.16 -26.21 -0.14 -2.32 16 16 C -0.10 -1.95 4.32 -87.93 -0.38 -2.33 16 17 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 18 C -0.13 -2.20 6.18 -24.29 -0.15 -2.35 16 19 C 0.15 2.80 4.29 -65.62 -0.28 2.52 16 20 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 21 C -0.14 -2.39 5.43 -26.28 -0.14 -2.54 16 22 N -0.60 -13.73 1.50 -161.38 -0.24 -13.98 16 23 C -0.34 -8.85 8.62 -15.06 -0.13 -8.98 16 24 H 0.08 2.08 8.06 -52.49 -0.42 1.65 16 25 C 0.03 0.72 5.01 -17.43 -0.09 0.64 16 26 N -0.90 -24.55 12.97 55.49 0.72 -23.83 16 27 Si 1.05 26.78 24.76 -169.99 -4.21 22.57 16 28 H -0.30 -7.62 6.90 56.52 0.39 -7.23 16 29 H -0.29 -7.41 6.88 56.52 0.39 -7.02 16 30 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 31 C 0.10 2.24 4.03 -2.83 -0.01 2.23 16 32 H 0.05 0.53 7.69 -51.93 -0.40 0.13 16 33 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.14 1.60 6.46 -52.49 -0.34 1.26 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.17 3.49 7.37 -52.49 -0.39 3.10 16 40 H 0.45 10.45 3.18 -40.85 -0.13 10.32 16 41 H 0.07 1.39 6.89 -51.93 -0.36 1.03 16 42 H 0.06 0.95 7.98 -51.93 -0.41 0.54 16 43 H 0.06 0.93 7.75 -51.93 -0.40 0.52 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 47 H 0.27 7.22 8.73 -40.82 -0.36 6.86 16 48 H 0.01 0.29 3.20 -51.93 -0.17 0.13 16 49 H 0.07 1.78 4.03 -56.65 -0.23 1.55 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -30.78 365.19 -8.27 -39.05 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.03 Total: 11.61 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.19 Total: 0.86 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.24 Total: -61.20 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.58 Total: -18.39 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.21 Total: 22.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.78 -8.27 -39.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047089328.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.386 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds