Wall clock time and date at job start Wed Apr 1 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35649 * 116.99459 * 2 1 4 4 C 1.39341 * 120.54175 * 0.27717 * 3 2 1 5 5 C 1.38312 * 118.43447 * 180.25967 * 4 3 2 6 6 C 1.50701 * 120.27451 * 179.70767 * 5 4 3 7 7 C 1.38768 * 119.44473 * 359.72746 * 5 4 3 8 8 N 1.31371 * 121.06579 * 0.02562 * 7 5 4 9 9 C 1.32855 * 121.70059 * 359.97438 * 8 7 5 10 10 C 1.47830 * 119.78645 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00283 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99918 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00369 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.17660 * 48.97893 * 13 12 10 15 15 C 1.53033 * 109.32468 * 289.42765 * 13 12 10 16 16 C 1.53968 * 108.82600 * 295.14105 * 15 13 12 17 17 H 1.08993 * 112.99823 * 169.00052 * 16 15 13 18 18 C 1.55428 * 106.41608 * 293.82067 * 16 15 13 19 19 C 1.55167 * 100.35499 * 73.37328 * 18 16 15 20 20 H 1.09003 * 113.04847 * 162.99120 * 19 18 16 21 21 C 1.52986 * 109.32839 * 168.53804 * 13 12 10 22 22 N 1.47788 * 104.25256 * 40.56083 * 19 18 16 23 23 C 1.36939 * 125.85734 * 153.51121 * 22 19 18 24 24 H 1.07994 * 120.00356 * 24.26711 * 23 22 19 25 25 C 1.38814 * 119.99457 * 204.26862 * 23 22 19 26 26 N 1.31621 * 119.99682 * 199.21303 * 25 23 22 27 27 Si 1.86804 * 120.00340 * 19.21675 * 25 23 22 28 28 H 1.48492 * 109.47024 * 275.09760 * 27 25 23 29 29 H 1.48499 * 109.46981 * 35.09555 * 27 25 23 30 30 H 1.48496 * 109.47214 * 155.09784 * 27 25 23 31 31 C 1.47077 * 108.28476 * 333.76681 * 22 19 18 32 32 H 1.09002 * 109.47578 * 299.99129 * 1 2 3 33 33 H 1.08999 * 109.47730 * 59.99398 * 1 2 3 34 34 H 1.09006 * 109.46870 * 179.97438 * 1 2 3 35 35 H 1.07994 * 120.78712 * 359.96905 * 4 3 2 36 36 H 1.09003 * 109.46890 * 270.02173 * 6 5 4 37 37 H 1.09002 * 109.47215 * 30.02220 * 6 5 4 38 38 H 1.09000 * 109.46647 * 150.02207 * 6 5 4 39 39 H 1.08000 * 119.46396 * 180.02562 * 7 5 4 40 40 H 0.97007 * 120.00009 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.57868 * 54.94093 * 15 13 12 42 42 H 1.09004 * 109.57926 * 175.20360 * 15 13 12 43 43 H 1.09001 * 111.23204 * 315.59959 * 18 16 15 44 44 H 1.09000 * 111.23917 * 191.16046 * 18 16 15 45 45 H 1.09003 * 109.53063 * 305.28999 * 21 13 12 46 46 H 1.09004 * 109.53446 * 185.06629 * 21 13 12 47 47 H 0.97001 * 120.00442 * 4.84532 * 26 25 23 48 48 H 1.09001 * 109.97878 * 120.23182 * 31 22 19 49 49 H 1.09000 * 109.98208 * 241.51323 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3844 0.0058 5 6 1.9695 3.5929 0.0000 6 6 1.2018 4.8897 -0.0007 7 6 3.3571 3.6012 -0.0055 8 7 4.0418 2.4800 -0.0059 9 6 3.4409 1.2951 -0.0005 10 6 4.2530 0.0599 -0.0006 11 8 3.7074 -1.0264 0.0039 12 7 5.5985 0.1380 -0.0056 13 6 6.4034 -1.0860 -0.0051 14 1 6.0328 -1.7585 -0.7787 15 6 6.2852 -1.7693 1.3591 16 6 6.9106 -0.8551 2.4286 17 1 6.6970 -1.1822 3.4461 18 6 8.4312 -0.7875 2.1139 19 6 8.4156 0.1214 0.8564 20 1 9.3919 0.5482 0.6262 21 6 7.8628 -0.7325 -0.2981 22 7 7.4066 1.1555 1.1674 23 6 7.3736 2.4242 0.6531 24 1 7.8468 2.6354 -0.2944 25 6 6.7317 3.4389 1.3499 26 7 6.3644 4.5368 0.7237 27 14 6.3894 3.2463 3.1761 28 1 5.1179 2.5031 3.3657 29 1 7.5015 2.4948 3.8116 30 1 6.2768 4.5878 3.8029 31 6 6.4477 0.5902 2.1286 32 1 -0.3634 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2173 2.3528 0.0099 36 1 1.0126 5.1993 -1.0285 37 1 0.2529 4.7505 0.5174 38 1 1.7846 5.6571 0.5086 39 1 3.8827 4.5447 -0.0096 40 1 6.0340 1.0048 -0.0095 41 1 5.2341 -1.9388 1.5929 42 1 6.8128 -2.7229 1.3370 43 1 8.8307 -1.7749 1.8824 44 1 8.9831 -0.3223 2.9306 45 1 7.9212 -0.1685 -1.2291 46 1 8.4485 -1.6474 -0.3877 47 1 6.4783 4.6085 -0.2370 48 1 6.4468 1.1807 3.0448 49 1 5.4484 0.5761 1.6934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047089328.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:17 Heat of formation + Delta-G solvation = 30.816895 kcal Electronic energy + Delta-G solvation = -33625.077205 eV Core-core repulsion = 29554.878224 eV Total energy + Delta-G solvation = -4070.198981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 18.94 seconds Orbital eigenvalues (eV) -42.52822 -41.56999 -39.29080 -39.16160 -35.48299 -34.95085 -34.41141 -32.80638 -32.27103 -31.83195 -29.85065 -28.85322 -27.91652 -26.75763 -24.71499 -24.60933 -23.72339 -22.83870 -21.86525 -21.18214 -20.29665 -19.33686 -19.02697 -18.42608 -18.10061 -17.55415 -16.97623 -16.63605 -16.08190 -15.91943 -15.87479 -15.30904 -15.15842 -14.99495 -14.77294 -14.58410 -14.36349 -14.14168 -13.91004 -13.67072 -13.51198 -13.47918 -13.35724 -13.21576 -12.99984 -12.90912 -12.75813 -12.47526 -12.44831 -12.32788 -12.31915 -11.94836 -11.42566 -11.20030 -11.10052 -10.98210 -10.79422 -10.46612 -10.45162 -10.28596 -9.48831 -9.16086 -8.78363 -8.36272 -5.29973 -0.27200 0.32912 1.42785 1.46218 1.65439 1.88152 2.22176 2.50432 2.57375 2.94592 3.25601 3.40781 3.49791 3.63995 3.71544 3.80021 3.87647 3.90303 4.00250 4.16402 4.24462 4.26805 4.28434 4.34943 4.35179 4.47331 4.49964 4.64192 4.69933 4.71867 4.76760 4.81343 4.84384 4.90507 4.94327 5.02407 5.05848 5.14923 5.15986 5.18756 5.20906 5.38124 5.43630 5.45513 5.57118 5.86898 5.89065 6.27352 6.37759 6.85681 7.02053 7.19536 7.57758 7.64288 8.32226 9.07742 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.006252 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.153026 B = 4477.187876 C = 6099.737454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.303 6.303 3 C 0.125 3.875 4 C -0.177 4.177 5 C -0.070 4.070 6 C -0.108 4.108 7 C 0.049 3.951 8 N -0.401 5.401 9 C -0.015 4.015 10 C 0.547 3.453 11 O -0.570 6.570 12 N -0.692 5.692 13 C 0.147 3.853 14 H 0.063 0.937 15 C -0.112 4.112 16 C -0.102 4.102 17 H 0.099 0.901 18 C -0.114 4.114 19 C 0.134 3.866 20 H 0.073 0.927 21 C -0.127 4.127 22 N -0.607 5.607 23 C -0.325 4.325 24 H 0.048 0.952 25 C -0.001 4.001 26 N -0.918 5.918 27 Si 1.085 2.915 28 H -0.308 1.308 29 H -0.290 1.290 30 H -0.311 1.311 31 C 0.093 3.907 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.184 0.816 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.158 0.842 40 H 0.438 0.562 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.110 0.890 47 H 0.255 0.745 48 H -0.010 1.010 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 -7.150 -0.867 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.214 6.214 3 C 0.074 3.926 4 C -0.203 4.203 5 C -0.073 4.073 6 C -0.165 4.165 7 C -0.113 4.113 8 N -0.111 5.111 9 C -0.153 4.153 10 C 0.333 3.667 11 O -0.452 6.452 12 N -0.359 5.359 13 C 0.043 3.957 14 H 0.081 0.919 15 C -0.151 4.151 16 C -0.121 4.121 17 H 0.117 0.883 18 C -0.152 4.152 19 C 0.028 3.972 20 H 0.091 0.909 21 C -0.166 4.166 22 N -0.335 5.335 23 C -0.452 4.452 24 H 0.066 0.934 25 C -0.203 4.203 26 N -0.558 5.558 27 Si 0.920 3.080 28 H -0.238 1.238 29 H -0.217 1.217 30 H -0.240 1.240 31 C -0.031 4.031 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.201 0.799 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.175 0.825 40 H 0.295 0.705 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.128 0.872 47 H 0.065 0.935 48 H 0.007 0.993 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.207 -7.212 0.373 11.702 hybrid contribution -0.191 0.186 -1.294 1.321 sum -9.398 -7.026 -0.921 11.770 Atomic orbital electron populations 1.23515 0.76453 1.05856 1.02745 1.86369 1.23352 1.24923 1.86742 1.20200 0.91867 0.86710 0.93825 1.21873 1.02071 0.89764 1.06601 1.21483 0.94304 0.97729 0.93773 1.20889 0.99982 0.91279 1.04322 1.23041 0.91682 0.96491 1.00082 1.67810 1.39975 0.97372 1.05952 1.20984 0.89776 0.93424 1.11081 1.18068 0.83614 0.87414 0.77604 1.90652 1.73082 1.28238 1.53182 1.47864 1.04982 1.14079 1.68950 1.20933 0.91452 0.85895 0.97455 0.91859 1.22012 1.00699 0.98754 0.93598 1.22589 0.96951 0.93330 0.99225 0.88314 1.22987 0.94381 1.00589 0.97206 1.21992 0.92278 0.88745 0.94158 0.90917 1.22391 0.94027 1.01284 0.98917 1.45235 1.26404 1.10641 1.51253 1.19615 1.37955 0.85082 1.02533 0.93434 1.25986 0.96641 0.92191 1.05471 1.70800 1.45985 1.28956 1.10041 0.83438 0.75450 0.72341 0.76759 1.23768 1.21703 1.24038 1.22484 0.96041 0.93513 0.91085 0.91061 0.90778 0.86508 0.79905 0.88543 0.88603 0.90669 0.82494 0.70537 0.93273 0.87778 0.87338 0.92072 0.93605 0.87220 0.93528 0.99273 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.83 113.37 1.11 1.29 16 2 O -0.30 -10.64 8.56 -68.65 -0.59 -11.22 16 3 C 0.12 4.68 6.71 22.93 0.15 4.83 16 4 C -0.18 -5.09 8.80 22.55 0.20 -4.89 16 5 C -0.07 -2.15 5.90 -19.72 -0.12 -2.26 16 6 C -0.11 -2.16 10.03 71.24 0.71 -1.45 16 7 C 0.05 2.02 10.80 84.89 0.92 2.94 16 8 N -0.40 -18.85 9.08 -184.63 -1.68 -20.52 16 9 C -0.01 -0.68 6.71 41.93 0.28 -0.40 16 10 C 0.55 25.87 6.13 86.78 0.53 26.40 16 11 O -0.57 -27.59 13.93 17.09 0.24 -27.35 16 12 N -0.69 -31.29 2.76 -445.40 -1.23 -32.51 16 13 C 0.15 5.47 2.71 45.00 0.12 5.59 16 14 H 0.06 2.33 8.00 -2.39 -0.02 2.31 16 15 C -0.11 -3.74 5.16 30.93 0.16 -3.58 16 16 C -0.10 -3.58 4.32 -9.05 -0.04 -3.62 16 17 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 18 C -0.11 -3.46 6.18 32.17 0.20 -3.26 16 19 C 0.13 4.95 4.29 45.78 0.20 5.15 16 20 H 0.07 2.68 8.14 -2.39 -0.02 2.67 16 21 C -0.13 -4.16 5.43 30.88 0.17 -3.99 16 22 N -0.61 -28.31 1.50 -664.49 -1.00 -29.30 16 23 C -0.32 -17.50 8.62 84.03 0.72 -16.77 16 24 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 25 C 0.00 -0.08 5.01 84.86 0.42 0.34 16 26 N -0.92 -52.33 12.97 21.65 0.28 -52.05 16 27 Si 1.08 56.45 24.76 68.60 1.70 58.15 16 28 H -0.31 -16.38 6.90 99.48 0.69 -15.69 16 29 H -0.29 -14.60 6.88 99.48 0.68 -13.92 16 30 H -0.31 -16.27 7.11 99.48 0.71 -15.57 16 31 C 0.09 4.27 4.03 86.85 0.35 4.62 16 32 H 0.07 1.19 7.69 -2.39 -0.02 1.17 16 33 H 0.07 1.19 7.71 -2.39 -0.02 1.17 16 34 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.18 3.42 6.46 -2.91 -0.02 3.41 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 38 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 39 H 0.16 6.76 7.37 -2.91 -0.02 6.74 16 40 H 0.44 21.44 3.18 -92.76 -0.29 21.15 16 41 H 0.05 1.87 6.89 -2.39 -0.02 1.85 16 42 H 0.10 2.63 7.98 -2.39 -0.02 2.61 16 43 H 0.11 2.44 7.75 -2.39 -0.02 2.42 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.11 2.66 8.00 -2.38 -0.02 2.64 16 47 H 0.26 14.76 8.73 -92.71 -0.81 13.95 16 48 H -0.01 -0.49 3.20 -2.39 -0.01 -0.50 16 49 H 0.05 2.64 4.03 -11.71 -0.05 2.60 16 Total: -1.00 -73.43 365.19 4.40 -69.03 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.57 Total: 34.84 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.10 Total: 10.94 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -3.62 Total: -134.39 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.35 Total: -38.57 kcal Atomic # 14 Polarization: 56.45 SS G_CDS: 1.70 Total: 58.15 kcal Total: -73.43 4.40 -69.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047089328.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.849 kcal (2) G-P(sol) polarization free energy of solvation -73.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.94 seconds