Wall clock time and date at job start Wed Apr 1 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38357 * 120.34655 * 2 1 4 4 N 1.31924 * 121.07790 * 179.97438 * 3 2 1 5 5 C 1.31696 * 121.88131 * 0.02562 * 4 3 2 6 6 C 1.39520 * 120.56357 * 0.25888 * 5 4 3 7 7 C 1.47846 * 120.55833 * 179.74255 * 6 5 4 8 8 O 1.21550 * 120.00215 * 135.45198 * 7 6 5 9 9 N 1.34779 * 119.99965 * 315.45858 * 7 6 5 10 10 C 1.47175 * 121.07807 * 4.19277 * 9 7 6 11 11 C 1.53271 * 108.55391 * 231.22880 * 10 9 7 12 12 H 1.08998 * 109.51379 * 66.94413 * 11 10 9 13 13 C 1.53001 * 109.51269 * 187.04720 * 11 10 9 14 14 O 1.43125 * 109.22123 * 306.96475 * 11 10 9 15 15 C 1.41888 * 114.39022 * 60.89370 * 14 11 10 16 16 C 1.54375 * 110.72429 * 63.39126 * 15 14 11 17 17 C 1.54463 * 102.87141 * 83.65299 * 16 15 14 18 18 N 1.47082 * 107.29541 * 21.50039 * 17 16 15 19 19 C 1.36938 * 125.63134 * 180.99940 * 18 17 16 20 20 H 1.08002 * 119.99712 * 185.23425 * 19 18 17 21 21 C 1.38813 * 120.00046 * 5.22839 * 19 18 17 22 22 N 1.31615 * 119.99957 * 352.61378 * 21 19 18 23 23 Si 1.86795 * 120.00114 * 172.61526 * 21 19 18 24 24 H 1.48505 * 109.47398 * 94.98187 * 23 21 19 25 25 H 1.48490 * 109.47280 * 214.98522 * 23 21 19 26 26 H 1.48504 * 109.47253 * 334.98805 * 23 21 19 27 27 C 1.47575 * 108.73874 * 0.99157 * 18 17 16 28 28 C 1.47333 * 121.08092 * 183.90937 * 9 7 6 29 29 C 1.38354 * 120.35083 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46979 * 90.00185 * 1 2 3 31 31 H 1.08991 * 109.47070 * 210.00016 * 1 2 3 32 32 H 1.08999 * 109.47373 * 330.00843 * 1 2 3 33 33 H 1.07995 * 119.46102 * 359.96994 * 3 2 1 34 34 H 1.08005 * 119.71928 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.62089 * 350.95182 * 10 9 7 36 36 H 1.09005 * 109.62439 * 111.31712 * 10 9 7 37 37 H 1.08998 * 109.47422 * 59.99803 * 13 11 10 38 38 H 1.09006 * 109.47390 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.47173 * 299.99910 * 13 11 10 40 40 H 1.08993 * 110.73149 * 201.99655 * 16 15 14 41 41 H 1.09001 * 110.73221 * 325.31279 * 16 15 14 42 42 H 1.08994 * 109.87955 * 262.07109 * 17 16 15 43 43 H 1.09005 * 110.00087 * 140.98991 * 17 16 15 44 44 H 0.97001 * 119.99928 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.37629 * 217.84699 * 27 18 17 46 46 H 1.09002 * 110.46840 * 95.54823 * 27 18 17 47 47 H 1.08998 * 109.64323 * 250.55757 * 28 9 7 48 48 H 1.09002 * 109.63532 * 11.18946 * 28 9 7 49 49 H 1.08000 * 120.85663 * 0.02764 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5251 1.2108 0.0005 5 6 4.2349 0.1015 0.0005 6 6 3.6054 -1.1435 -0.0054 7 6 4.4023 -2.3888 -0.0111 8 8 4.0980 -3.3086 0.7230 9 7 5.4664 -2.5041 -0.8302 10 6 5.9112 -1.3740 -1.6615 11 6 6.0505 -1.8585 -3.1090 12 1 5.0665 -2.1088 -3.5054 13 6 6.6783 -0.7527 -3.9598 14 8 6.8884 -3.0185 -3.1390 15 6 6.3919 -4.1193 -2.3941 16 6 5.0562 -4.6204 -2.9841 17 6 5.5135 -5.5553 -4.1255 18 7 6.8954 -5.9629 -3.8298 19 6 7.6710 -6.7781 -4.6103 20 1 8.6463 -7.0879 -4.2649 21 6 7.2037 -7.2063 -5.8452 22 7 5.9633 -6.9514 -6.2040 23 14 8.3353 -8.1444 -6.9980 24 1 8.1324 -9.6037 -6.8118 25 1 8.0258 -7.7769 -8.4030 26 1 9.7474 -7.7985 -6.6954 27 6 7.3081 -5.3482 -2.5532 28 6 6.2259 -3.7636 -0.9178 29 6 2.2061 -1.1939 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6629 2.1274 -0.0005 34 1 5.3136 0.1560 0.0005 35 1 5.1748 -0.5720 -1.6132 36 1 6.8731 -1.0100 -1.3002 37 1 7.6629 -0.5042 -3.5639 38 1 6.7766 -1.0977 -4.9892 39 1 6.0420 0.1320 -3.9328 40 1 4.4876 -5.1735 -2.2367 41 1 4.4720 -3.7885 -3.3774 42 1 5.4793 -5.0235 -5.0763 43 1 4.8693 -6.4335 -4.1688 44 1 5.6367 -7.2510 -7.0668 45 1 8.3524 -5.0394 -2.6008 46 1 7.1561 -6.0443 -1.7283 47 1 7.2050 -3.6339 -0.4568 48 1 5.6795 -4.5570 -0.4078 49 1 1.6859 -2.1404 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071148758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:04 Heat of formation + Delta-G solvation = 2.742375 kcal Electronic energy + Delta-G solvation = -31577.454450 eV Core-core repulsion = 27506.038067 eV Total energy + Delta-G solvation = -4071.416383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.26034 -40.09308 -38.60185 -36.43330 -34.83532 -33.99832 -33.22604 -32.36389 -31.35746 -29.36734 -28.59300 -27.79570 -26.58667 -26.06148 -24.45972 -23.43117 -22.92933 -21.86418 -20.24650 -19.94753 -19.09178 -17.65234 -17.40105 -17.03386 -16.93531 -16.50897 -15.94808 -15.30329 -14.83452 -14.72509 -14.53309 -14.30998 -14.09739 -13.86340 -13.55782 -13.50390 -13.41251 -13.19429 -13.00707 -12.94736 -12.49731 -12.29862 -12.27026 -12.10831 -12.00607 -11.80780 -11.62437 -11.02324 -10.93057 -10.84406 -10.63664 -10.23866 -10.23053 -10.14148 -10.10104 -10.01397 -9.75310 -9.65023 -9.54407 -9.26122 -8.53945 -8.44908 -6.80682 -5.69575 -3.01120 0.39606 0.81081 2.45614 2.70516 3.36971 3.42336 3.47903 3.50120 3.83335 3.91784 4.15604 4.37113 4.45792 4.50529 4.54845 4.64704 4.70323 4.82062 4.98582 5.04194 5.13406 5.14679 5.17845 5.27861 5.32561 5.43635 5.48674 5.54050 5.56393 5.58678 5.65183 5.74506 5.77865 5.79036 5.87829 5.97722 6.09897 6.16531 6.18995 6.27333 6.45587 6.48630 6.52621 6.63591 7.15810 7.47129 7.55642 7.63903 7.66255 7.84842 7.90979 8.27250 9.23735 9.84193 10.50063 11.42827 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.002783 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.340185 B =10060.233737 C =10246.347560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C 0.114 3.886 4 N -0.481 5.481 5 C 0.119 3.881 6 C -0.171 4.171 7 C 0.565 3.435 8 O -0.530 6.530 9 N -0.602 5.602 10 C 0.065 3.935 11 C 0.070 3.930 12 H 0.065 0.935 13 C -0.141 4.141 14 O -0.342 6.342 15 C 0.093 3.907 16 C -0.165 4.165 17 C 0.185 3.815 18 N -0.599 5.599 19 C -0.225 4.225 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.153 3.847 28 C 0.098 3.902 29 C -0.026 4.026 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.251 0.749 45 H 0.052 0.948 46 H 0.037 0.963 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 18.375 12.050 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C -0.043 4.043 4 N -0.188 5.188 5 C -0.039 4.039 6 C -0.176 4.176 7 C 0.352 3.648 8 O -0.407 6.407 9 N -0.334 5.334 10 C -0.058 4.058 11 C 0.011 3.989 12 H 0.083 0.917 13 C -0.199 4.199 14 O -0.260 6.260 15 C 0.051 3.949 16 C -0.204 4.204 17 C 0.060 3.940 18 N -0.325 5.325 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.026 3.974 28 C -0.024 4.024 29 C -0.052 4.052 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.095 0.905 48 H 0.121 0.879 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.530 18.556 12.127 23.411 hybrid contribution -0.144 -1.243 -0.580 1.380 sum -7.674 17.313 11.546 22.180 Atomic orbital electron populations 1.20750 0.89497 1.03508 1.03050 1.20928 0.98074 0.93666 1.01545 1.22889 0.89909 0.97681 0.93815 1.67730 1.08080 1.30645 1.12347 1.23100 1.00564 0.86567 0.93653 1.20962 0.95203 0.95087 1.06367 1.18069 0.79860 0.86674 0.80150 1.90805 1.69204 1.40414 1.40234 1.48093 1.29472 1.14193 1.41655 1.22963 1.01351 0.89323 0.92194 1.22432 0.95776 0.87582 0.93085 0.91724 1.21695 1.01273 0.96148 1.00790 1.87934 1.46123 1.20606 1.71376 1.22491 0.96477 0.87794 0.88103 1.23354 0.96034 1.00275 1.00701 1.21103 0.85277 0.94559 0.93031 1.44409 1.11627 1.55635 1.20839 1.19032 0.98135 1.21281 0.96916 0.90355 1.24805 0.96645 1.01167 0.97700 1.69978 1.13982 1.51152 1.21640 0.86129 0.80003 0.79213 0.80616 1.21745 1.21694 1.20613 1.21336 0.96358 0.89088 0.90626 1.22319 0.96375 0.85943 0.97760 1.21560 0.92110 0.99087 0.92458 0.90468 0.90943 0.90858 0.82259 0.81877 0.88580 0.89902 0.91612 0.90950 0.91309 0.91701 0.92096 0.93398 0.94089 0.93839 0.92971 0.94578 0.90484 0.87856 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.03 36.01 0.36 -0.22 16 2 C -0.14 -1.14 5.89 -104.54 -0.62 -1.75 16 3 C 0.11 0.93 10.85 -17.47 -0.19 0.74 16 4 N -0.48 -4.84 10.35 -12.91 -0.13 -4.98 16 5 C 0.12 1.20 8.53 -17.13 -0.15 1.06 16 6 C -0.17 -1.98 5.23 -104.82 -0.55 -2.52 16 7 C 0.57 7.97 7.35 -12.33 -0.09 7.88 16 8 O -0.53 -9.17 16.50 5.32 0.09 -9.08 16 9 N -0.60 -8.09 2.94 -173.56 -0.51 -8.60 16 10 C 0.06 0.72 4.59 -3.53 -0.02 0.71 16 11 C 0.07 0.96 3.20 -26.59 -0.08 0.87 16 12 H 0.06 0.95 6.24 -51.93 -0.32 0.63 16 13 C -0.14 -1.59 9.57 37.16 0.36 -1.23 16 14 O -0.34 -6.12 9.92 -35.22 -0.35 -6.47 16 15 C 0.09 1.66 0.84 -89.44 -0.08 1.59 16 16 C -0.17 -3.22 5.88 -25.24 -0.15 -3.37 16 17 C 0.18 4.60 5.40 -2.96 -0.02 4.58 16 18 N -0.60 -15.51 3.40 -170.31 -0.58 -16.09 16 19 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 20 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 21 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 22 N -0.92 -27.34 10.36 55.49 0.57 -26.76 16 23 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.15 3.19 6.42 -2.87 -0.02 3.17 16 28 C 0.10 1.48 5.32 -3.71 -0.02 1.46 16 29 C -0.03 -0.27 9.52 -38.87 -0.37 -0.64 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.16 1.39 6.48 -52.48 -0.34 1.05 16 35 H 0.10 0.92 4.37 -51.93 -0.23 0.69 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 41 H 0.06 1.12 6.08 -51.93 -0.32 0.81 16 42 H 0.05 1.33 7.31 -51.93 -0.38 0.95 16 43 H 0.04 1.12 7.59 -51.93 -0.39 0.73 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.04 0.72 7.99 -51.93 -0.42 0.31 16 47 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.10 1.65 6.91 -51.93 -0.36 1.29 16 49 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -34.11 384.96 -9.36 -43.47 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.35 Total: -0.13 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.87 Total: 5.53 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.65 Total: -56.43 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.26 Total: -15.55 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.11 -9.36 -43.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071148758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.215 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds