Wall clock time and date at job start Wed Apr 1 2020 03:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38350 * 120.35050 * 2 1 4 4 N 1.31922 * 121.08359 * 180.02562 * 3 2 1 5 5 C 1.31697 * 121.87496 * 359.72445 * 4 3 2 6 6 C 1.39522 * 120.57049 * 0.53678 * 5 4 3 7 7 C 1.47832 * 120.56113 * 179.74931 * 6 5 4 8 8 O 1.21561 * 120.00109 * 132.87549 * 7 6 5 9 9 N 1.34773 * 120.00465 * 312.87875 * 7 6 5 10 10 C 1.47171 * 121.07068 * 183.69059 * 9 7 6 11 11 C 1.53280 * 108.55260 * 128.85653 * 10 9 7 12 12 H 1.09003 * 109.50692 * 292.96926 * 11 10 9 13 13 C 1.52996 * 109.50787 * 172.87054 * 11 10 9 14 14 O 1.43100 * 109.22479 * 52.89159 * 11 10 9 15 15 C 1.42062 * 114.32671 * 298.84901 * 14 11 10 16 16 C 1.54517 * 110.33458 * 298.07092 * 15 14 11 17 17 C 1.55021 * 101.52710 * 276.06465 * 16 15 14 18 18 N 1.47480 * 104.89976 * 323.62433 * 17 16 15 19 19 C 1.36932 * 125.66382 * 203.97586 * 18 17 16 20 20 H 1.08007 * 120.00063 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00094 * 0.04474 * 19 18 17 22 22 N 1.31616 * 120.00132 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00221 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47274 * 119.99630 * 23 21 19 26 26 H 1.48497 * 109.47331 * 240.00149 * 23 21 19 27 27 C 1.47187 * 108.67191 * 24.01349 * 18 17 16 28 28 C 1.47314 * 121.06586 * 3.41749 * 9 7 6 29 29 C 1.38356 * 120.34882 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47616 * 269.97518 * 1 2 3 31 31 H 1.08997 * 109.47520 * 29.97793 * 1 2 3 32 32 H 1.09003 * 109.47751 * 149.97694 * 1 2 3 33 33 H 1.08000 * 119.45716 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.71546 * 180.27041 * 5 4 3 35 35 H 1.08994 * 109.62423 * 248.57530 * 10 9 7 36 36 H 1.08999 * 109.61739 * 8.95149 * 10 9 7 37 37 H 1.08992 * 109.47439 * 59.99896 * 13 11 10 38 38 H 1.09000 * 109.47090 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47038 * 299.99477 * 13 11 10 40 40 H 1.09008 * 111.01216 * 34.12359 * 16 15 14 41 41 H 1.08996 * 111.02003 * 158.00329 * 16 15 14 42 42 H 1.09005 * 110.35196 * 204.76559 * 17 16 15 43 43 H 1.09004 * 110.44623 * 82.52792 * 17 16 15 44 44 H 0.97004 * 120.00422 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.91079 * 239.13124 * 27 18 17 46 46 H 1.09004 * 109.90969 * 117.87269 * 27 18 17 47 47 H 1.09002 * 109.67431 * 349.13491 * 28 9 7 48 48 H 1.08995 * 109.68660 * 109.68967 * 28 9 7 49 49 H 1.08008 * 120.85514 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5251 1.2108 -0.0005 5 6 4.2348 0.1014 0.0043 6 6 3.6053 -1.1437 -0.0010 7 6 4.4022 -2.3889 -0.0011 8 8 4.1237 -3.2888 0.7672 9 7 5.4375 -2.5264 -0.8529 10 6 6.1961 -3.7852 -0.9294 11 6 6.2748 -4.2187 -2.3976 12 1 5.2796 -4.4879 -2.7514 13 6 7.2063 -5.4257 -2.5246 14 8 6.7843 -3.1357 -3.1820 15 6 5.9796 -1.9652 -3.1562 16 6 4.5816 -2.2617 -3.7436 17 6 4.8434 -2.1001 -5.2630 18 7 5.8102 -0.9912 -5.3655 19 6 5.9925 -0.1896 -6.4605 20 1 6.7301 0.5991 -6.4357 21 6 5.2292 -0.3903 -7.6024 22 7 4.3305 -1.3514 -7.6327 23 14 5.4774 0.7037 -9.0961 24 1 6.5400 1.7004 -8.8086 25 1 5.8813 -0.1286 -10.2576 26 1 4.2086 1.4088 -9.4096 27 6 6.5472 -0.8897 -4.0954 28 6 5.8424 -1.4234 -1.7416 29 6 2.2060 -1.1940 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3635 -0.8898 -0.5142 33 1 1.6629 2.1274 0.0004 34 1 5.3134 0.1559 0.0082 35 1 7.2020 -3.6307 -0.5390 36 1 5.6903 -4.5534 -0.3446 37 1 6.8192 -6.2483 -1.9235 38 1 7.2615 -5.7337 -3.5687 39 1 8.2017 -5.1552 -2.1722 40 1 4.2657 -3.2778 -3.5073 41 1 3.8484 -1.5349 -3.3940 42 1 3.9190 -1.8466 -5.7821 43 1 5.2702 -3.0146 -5.6752 44 1 3.7973 -1.4919 -8.4308 45 1 6.4010 0.0985 -3.6594 46 1 7.6086 -1.0692 -4.2668 47 1 5.0854 -0.6394 -1.7217 48 1 6.7994 -1.0189 -1.4121 49 1 1.6857 -2.1405 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071148760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:12 Heat of formation + Delta-G solvation = 0.788811 kcal Electronic energy + Delta-G solvation = -31961.267570 eV Core-core repulsion = 27889.766474 eV Total energy + Delta-G solvation = -4071.501096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.20010 -40.03281 -38.65484 -36.31384 -34.98221 -33.84604 -33.22486 -32.29052 -31.34721 -29.34176 -28.57573 -27.69990 -26.88633 -25.75751 -24.18873 -23.76332 -22.76829 -21.85398 -20.25068 -19.86498 -19.10825 -17.56558 -17.34258 -17.09533 -16.89800 -16.40213 -15.98716 -15.19018 -14.93954 -14.82540 -14.46619 -14.27032 -14.16227 -13.70438 -13.50905 -13.35762 -13.32485 -13.04746 -12.98712 -12.80505 -12.58884 -12.37716 -12.25186 -12.13862 -11.96955 -11.73180 -11.58511 -11.07879 -10.95081 -10.91134 -10.64713 -10.49193 -10.16588 -10.08844 -10.00335 -9.98994 -9.65541 -9.59212 -9.54533 -9.10642 -8.67735 -8.46741 -6.86900 -5.67308 -3.09178 0.56035 0.98251 2.46260 2.73768 3.38986 3.44461 3.47030 3.53106 3.79260 4.04881 4.28261 4.45705 4.52859 4.60419 4.66986 4.71213 4.83274 4.89835 5.00729 5.04421 5.12346 5.26584 5.31290 5.33477 5.41640 5.44172 5.46395 5.52383 5.57339 5.66962 5.68526 5.70021 5.78381 5.84386 5.93385 5.97135 6.08315 6.13226 6.26323 6.36459 6.42191 6.44667 6.55452 6.61735 7.14558 7.50127 7.56271 7.61702 7.65861 7.81941 7.91013 8.31698 9.19055 9.79495 10.43856 11.36899 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.004209 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.608668 B = 6650.460417 C = 8728.035905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.140 4.140 3 C 0.117 3.883 4 N -0.478 5.478 5 C 0.124 3.876 6 C -0.174 4.174 7 C 0.570 3.430 8 O -0.537 6.537 9 N -0.601 5.601 10 C 0.085 3.915 11 C 0.069 3.931 12 H 0.067 0.933 13 C -0.140 4.140 14 O -0.351 6.351 15 C 0.096 3.904 16 C -0.166 4.166 17 C 0.161 3.839 18 N -0.601 5.601 19 C -0.221 4.221 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.154 3.846 28 C 0.082 3.918 29 C -0.026 4.026 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.015 0.985 44 H 0.251 0.749 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.100 0.900 48 H 0.080 0.920 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 -1.632 17.013 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.142 4.142 3 C -0.039 4.039 4 N -0.185 5.185 5 C -0.034 4.034 6 C -0.179 4.179 7 C 0.358 3.642 8 O -0.415 6.415 9 N -0.333 5.333 10 C -0.037 4.037 11 C 0.010 3.990 12 H 0.085 0.915 13 C -0.198 4.198 14 O -0.270 6.270 15 C 0.055 3.945 16 C -0.205 4.205 17 C 0.036 3.964 18 N -0.327 5.327 19 C -0.349 4.349 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.027 3.973 28 C -0.041 4.041 29 C -0.052 4.052 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.033 0.967 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.118 0.882 48 H 0.099 0.901 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.647 -1.281 17.099 17.350 hybrid contribution -0.433 -0.312 -0.707 0.886 sum -3.081 -1.593 16.392 16.755 Atomic orbital electron populations 1.20739 0.89539 1.03684 1.02752 1.20902 0.98037 0.93682 1.01592 1.22900 0.89908 0.97722 0.93414 1.67723 1.08085 1.30607 1.12088 1.23034 1.00515 0.86539 0.93304 1.20862 0.95157 0.94948 1.06902 1.18084 0.79473 0.86513 0.80132 1.90775 1.69155 1.41932 1.39632 1.48083 1.31529 1.15233 1.38505 1.22417 0.96704 0.86348 0.98250 1.22477 0.98775 0.88508 0.89194 0.91526 1.21684 0.99453 0.95281 1.03372 1.87922 1.48408 1.21628 1.69008 1.22173 0.92853 0.86962 0.92477 1.23509 0.94982 1.00327 1.01634 1.21880 0.96466 0.89755 0.88317 1.44494 1.41417 1.36459 1.10336 1.19119 1.16707 1.09027 0.90045 0.90265 1.24778 0.98837 0.98805 0.98162 1.69807 1.26190 1.33119 1.27973 0.85991 0.77312 0.79507 0.82659 1.20449 1.21748 1.21756 1.21059 0.96055 0.93076 0.87082 1.22616 1.01692 0.89553 0.90277 1.21484 0.92008 0.98958 0.92773 0.90703 0.90736 0.90961 0.82226 0.82125 0.90459 0.88260 0.91114 0.91108 0.91687 0.92017 0.91806 0.87658 0.96665 0.93782 0.94334 0.94378 0.88165 0.90147 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.03 36.00 0.36 -0.42 16 2 C -0.14 -1.43 5.89 -104.54 -0.62 -2.04 16 3 C 0.12 1.26 10.85 -17.47 -0.19 1.07 16 4 N -0.48 -6.11 10.35 -12.91 -0.13 -6.25 16 5 C 0.12 1.55 8.56 -17.13 -0.15 1.41 16 6 C -0.17 -2.28 5.11 -104.83 -0.54 -2.81 16 7 C 0.57 8.26 7.32 -12.34 -0.09 8.17 16 8 O -0.54 -9.02 16.51 5.31 0.09 -8.93 16 9 N -0.60 -8.24 2.92 -173.98 -0.51 -8.75 16 10 C 0.09 1.08 5.90 -3.53 -0.02 1.06 16 11 C 0.07 0.96 3.17 -26.59 -0.08 0.87 16 12 H 0.07 1.00 6.13 -51.93 -0.32 0.68 16 13 C -0.14 -1.57 9.57 37.16 0.36 -1.21 16 14 O -0.35 -6.09 9.87 -35.23 -0.35 -6.44 16 15 C 0.10 1.68 0.83 -89.94 -0.07 1.60 16 16 C -0.17 -3.18 5.90 -24.87 -0.15 -3.33 16 17 C 0.16 3.93 5.89 -2.44 -0.01 3.91 16 18 N -0.60 -15.28 3.40 -170.24 -0.58 -15.86 16 19 C -0.22 -6.10 10.28 -15.06 -0.15 -6.25 16 20 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 23 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 C 0.15 3.16 6.61 -3.33 -0.02 3.14 16 28 C 0.08 1.14 3.84 -4.05 -0.02 1.13 16 29 C -0.03 -0.31 9.55 -38.87 -0.37 -0.68 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.16 1.76 6.80 -52.49 -0.36 1.40 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 1.24 7.10 -51.93 -0.37 0.87 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.12 5.98 -51.92 -0.31 0.81 16 41 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16 42 H 0.11 2.89 5.88 -51.93 -0.31 2.58 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.04 0.75 7.79 -51.93 -0.40 0.34 16 46 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 47 H 0.10 1.41 4.48 -51.93 -0.23 1.17 16 48 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -33.05 384.29 -9.33 -42.38 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.31 Total: 2.14 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.86 Total: 5.22 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.66 Total: -57.08 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.26 Total: -15.38 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.05 -9.33 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071148760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.170 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds