Wall clock time and date at job start Wed Apr 1 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38350 * 120.35050 * 2 1 4 4 N 1.31922 * 121.08359 * 180.02562 * 3 2 1 5 5 C 1.31697 * 121.87496 * 359.72445 * 4 3 2 6 6 C 1.39522 * 120.57049 * 0.53678 * 5 4 3 7 7 C 1.47832 * 120.56113 * 179.74931 * 6 5 4 8 8 O 1.21561 * 120.00109 * 132.87549 * 7 6 5 9 9 N 1.34773 * 120.00465 * 312.87875 * 7 6 5 10 10 C 1.47171 * 121.07068 * 183.69059 * 9 7 6 11 11 C 1.53280 * 108.55260 * 128.85653 * 10 9 7 12 12 H 1.09003 * 109.50692 * 292.96926 * 11 10 9 13 13 C 1.52996 * 109.50787 * 172.87054 * 11 10 9 14 14 O 1.43100 * 109.22479 * 52.89159 * 11 10 9 15 15 C 1.42062 * 114.32671 * 298.84901 * 14 11 10 16 16 C 1.54517 * 110.33458 * 298.07092 * 15 14 11 17 17 C 1.55021 * 101.52710 * 276.06465 * 16 15 14 18 18 N 1.47480 * 104.89976 * 323.62433 * 17 16 15 19 19 C 1.36932 * 125.66382 * 203.97586 * 18 17 16 20 20 H 1.08007 * 120.00063 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00094 * 0.04474 * 19 18 17 22 22 N 1.31616 * 120.00132 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00221 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47274 * 119.99630 * 23 21 19 26 26 H 1.48497 * 109.47331 * 240.00149 * 23 21 19 27 27 C 1.47187 * 108.67191 * 24.01349 * 18 17 16 28 28 C 1.47314 * 121.06586 * 3.41749 * 9 7 6 29 29 C 1.38356 * 120.34882 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47616 * 269.97518 * 1 2 3 31 31 H 1.08997 * 109.47520 * 29.97793 * 1 2 3 32 32 H 1.09003 * 109.47751 * 149.97694 * 1 2 3 33 33 H 1.08000 * 119.45716 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.71546 * 180.27041 * 5 4 3 35 35 H 1.08994 * 109.62423 * 248.57530 * 10 9 7 36 36 H 1.08999 * 109.61739 * 8.95149 * 10 9 7 37 37 H 1.08992 * 109.47439 * 59.99896 * 13 11 10 38 38 H 1.09000 * 109.47090 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47038 * 299.99477 * 13 11 10 40 40 H 1.09008 * 111.01216 * 34.12359 * 16 15 14 41 41 H 1.08996 * 111.02003 * 158.00329 * 16 15 14 42 42 H 1.09005 * 110.35196 * 204.76559 * 17 16 15 43 43 H 1.09004 * 110.44623 * 82.52792 * 17 16 15 44 44 H 0.97004 * 120.00422 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.91079 * 239.13124 * 27 18 17 46 46 H 1.09004 * 109.90969 * 117.87269 * 27 18 17 47 47 H 1.09002 * 109.67431 * 349.13491 * 28 9 7 48 48 H 1.08995 * 109.68660 * 109.68967 * 28 9 7 49 49 H 1.08008 * 120.85514 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5251 1.2108 -0.0005 5 6 4.2348 0.1014 0.0043 6 6 3.6053 -1.1437 -0.0010 7 6 4.4022 -2.3889 -0.0011 8 8 4.1237 -3.2888 0.7672 9 7 5.4375 -2.5264 -0.8529 10 6 6.1961 -3.7852 -0.9294 11 6 6.2748 -4.2187 -2.3976 12 1 5.2796 -4.4879 -2.7514 13 6 7.2063 -5.4257 -2.5246 14 8 6.7843 -3.1357 -3.1820 15 6 5.9796 -1.9652 -3.1562 16 6 4.5816 -2.2617 -3.7436 17 6 4.8434 -2.1001 -5.2630 18 7 5.8102 -0.9912 -5.3655 19 6 5.9925 -0.1896 -6.4605 20 1 6.7301 0.5991 -6.4357 21 6 5.2292 -0.3903 -7.6024 22 7 4.3305 -1.3514 -7.6327 23 14 5.4774 0.7037 -9.0961 24 1 6.5400 1.7004 -8.8086 25 1 5.8813 -0.1286 -10.2576 26 1 4.2086 1.4088 -9.4096 27 6 6.5472 -0.8897 -4.0954 28 6 5.8424 -1.4234 -1.7416 29 6 2.2060 -1.1940 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3635 -0.8898 -0.5142 33 1 1.6629 2.1274 0.0004 34 1 5.3134 0.1559 0.0082 35 1 7.2020 -3.6307 -0.5390 36 1 5.6903 -4.5534 -0.3446 37 1 6.8192 -6.2483 -1.9235 38 1 7.2615 -5.7337 -3.5687 39 1 8.2017 -5.1552 -2.1722 40 1 4.2657 -3.2778 -3.5073 41 1 3.8484 -1.5349 -3.3940 42 1 3.9190 -1.8466 -5.7821 43 1 5.2702 -3.0146 -5.6752 44 1 3.7973 -1.4919 -8.4308 45 1 6.4010 0.0985 -3.6594 46 1 7.6086 -1.0692 -4.2668 47 1 5.0854 -0.6394 -1.7217 48 1 6.7994 -1.0189 -1.4121 49 1 1.6857 -2.1405 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071148760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:11 Heat of formation + Delta-G solvation = -20.271150 kcal Electronic energy + Delta-G solvation = -31962.180799 eV Core-core repulsion = 27889.766474 eV Total energy + Delta-G solvation = -4072.414325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.29109 -41.12100 -39.86503 -37.91627 -36.13764 -34.83703 -34.63574 -33.43529 -32.76944 -31.07875 -30.05863 -28.49222 -27.84189 -27.40724 -25.64047 -24.94282 -23.68249 -23.16357 -21.97337 -21.09964 -20.35391 -19.01044 -18.61896 -18.36414 -17.87839 -17.42221 -17.22992 -16.86039 -16.34590 -16.07454 -15.80796 -15.62661 -15.20181 -14.97229 -14.80969 -14.55308 -14.30013 -14.21257 -14.10909 -13.89117 -13.67019 -13.55420 -13.44776 -13.18228 -13.03249 -12.93105 -12.88300 -12.81947 -12.78417 -12.30178 -12.25662 -11.96804 -11.89785 -11.76394 -11.53457 -11.27143 -10.99612 -10.88869 -10.76334 -10.50313 -9.94979 -9.65427 -8.92441 -7.78411 -5.23190 -0.33735 0.11499 1.37979 1.47635 1.48504 1.58988 1.68030 2.45036 2.56600 2.66359 3.07713 3.31122 3.37578 3.47164 3.58345 3.69341 3.75593 3.76890 3.77915 3.89645 3.95016 4.00410 4.12976 4.17011 4.25502 4.38835 4.43902 4.47795 4.53143 4.66611 4.69198 4.73313 4.78169 4.81471 4.83497 4.88765 4.92827 5.03548 5.04345 5.12548 5.14775 5.20475 5.29419 5.44866 5.53996 5.56535 5.73664 6.04060 6.25486 6.28600 6.76366 6.83653 7.08211 7.74616 8.38866 9.24463 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.004209 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.608668 B = 6650.460417 C = 8728.035905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C 0.112 3.888 4 N -0.498 5.498 5 C 0.117 3.883 6 C -0.190 4.190 7 C 0.573 3.427 8 O -0.564 6.564 9 N -0.600 5.600 10 C 0.088 3.912 11 C 0.065 3.935 12 H 0.051 0.949 13 C -0.135 4.135 14 O -0.371 6.371 15 C 0.108 3.892 16 C -0.148 4.148 17 C 0.168 3.832 18 N -0.622 5.622 19 C -0.235 4.235 20 H 0.086 0.914 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.290 1.290 27 C 0.148 3.852 28 C 0.093 3.907 29 C -0.040 4.040 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.189 0.811 34 H 0.173 0.827 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.072 0.928 43 H -0.020 1.020 44 H 0.246 0.754 45 H 0.058 0.942 46 H 0.034 0.966 47 H 0.103 0.897 48 H 0.106 0.894 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -0.606 18.619 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C -0.044 4.044 4 N -0.205 5.205 5 C -0.040 4.040 6 C -0.195 4.195 7 C 0.362 3.638 8 O -0.444 6.444 9 N -0.331 5.331 10 C -0.033 4.033 11 C 0.007 3.993 12 H 0.069 0.931 13 C -0.192 4.192 14 O -0.290 6.290 15 C 0.067 3.933 16 C -0.187 4.187 17 C 0.043 3.957 18 N -0.348 5.348 19 C -0.364 4.364 20 H 0.104 0.896 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.809 3.191 24 H -0.188 1.188 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.023 3.977 28 C -0.030 4.030 29 C -0.066 4.066 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.205 0.795 34 H 0.190 0.810 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.090 0.910 43 H -0.002 1.002 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.456 -0.250 18.731 18.893 hybrid contribution -0.508 -0.659 -1.202 1.462 sum -2.964 -0.909 17.528 17.800 Atomic orbital electron populations 1.20825 0.87250 1.04502 1.03995 1.21223 0.99629 0.92839 1.00005 1.23444 0.89547 0.99130 0.92319 1.67759 1.09178 1.30748 1.12839 1.23190 1.01156 0.86276 0.93401 1.20855 0.95637 0.94571 1.08450 1.18264 0.79236 0.86614 0.79669 1.90755 1.69794 1.43040 1.40804 1.48105 1.31460 1.15480 1.38064 1.22467 0.97663 0.86069 0.97140 1.22685 0.98645 0.88363 0.89558 0.93086 1.21700 0.99596 0.94802 1.03146 1.87897 1.48604 1.22318 1.70223 1.21947 0.90862 0.86669 0.93832 1.23284 0.96633 1.00969 0.97799 1.21558 0.94597 0.88115 0.91470 1.44769 1.42295 1.36159 1.11561 1.19525 1.16535 1.09312 0.91020 0.89589 1.25631 0.98913 1.00337 1.01021 1.70063 1.27095 1.34740 1.28282 0.84971 0.77411 0.77911 0.78823 1.18799 1.22196 1.21728 1.21239 0.95362 0.95196 0.85923 1.22495 1.03187 0.89391 0.87955 1.21707 0.91873 0.99941 0.93101 0.89112 0.89267 0.90819 0.79455 0.81015 0.88500 0.87823 0.88463 0.92449 0.90599 0.91166 0.91487 0.90981 1.00198 0.94393 0.92441 0.94782 0.87877 0.87580 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.03 71.23 0.71 -0.56 16 2 C -0.14 -2.50 5.89 -19.81 -0.12 -2.62 16 3 C 0.11 2.17 10.85 84.71 0.92 3.09 16 4 N -0.50 -11.90 10.35 -194.76 -2.01 -13.91 16 5 C 0.12 2.76 8.56 85.02 0.73 3.49 16 6 C -0.19 -4.77 5.11 -20.00 -0.10 -4.88 16 7 C 0.57 15.91 7.32 86.78 0.63 16.55 16 8 O -0.56 -18.43 16.51 -3.91 -0.06 -18.49 16 9 N -0.60 -15.38 2.92 -822.62 -2.40 -17.79 16 10 C 0.09 2.05 5.90 86.35 0.51 2.56 16 11 C 0.07 1.74 3.17 30.69 0.10 1.84 16 12 H 0.05 1.51 6.13 -2.39 -0.01 1.50 16 13 C -0.14 -2.80 9.57 71.98 0.69 -2.11 16 14 O -0.37 -12.61 9.87 -148.97 -1.47 -14.08 16 15 C 0.11 3.67 0.83 -10.35 -0.01 3.66 16 16 C -0.15 -5.74 5.90 31.80 0.19 -5.55 16 17 C 0.17 8.54 5.89 86.88 0.51 9.05 16 18 N -0.62 -32.17 3.40 -692.50 -2.36 -34.52 16 19 C -0.24 -13.14 10.28 84.03 0.86 -12.28 16 20 H 0.09 4.56 7.83 -2.91 -0.02 4.53 16 21 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 22 N -0.95 -57.22 10.09 21.65 0.22 -57.00 16 23 Si 0.98 45.58 29.55 68.60 2.03 47.60 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 C 0.15 6.01 6.61 86.47 0.57 6.59 16 28 C 0.09 2.42 3.84 85.93 0.33 2.75 16 29 C -0.04 -0.90 9.55 22.73 0.22 -0.69 16 30 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 0.80 8.09 -2.39 -0.02 0.79 16 32 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 33 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.17 3.44 6.80 -2.91 -0.02 3.42 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 2.38 7.10 -2.39 -0.02 2.36 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 2.58 5.98 -2.38 -0.01 2.57 16 41 H 0.07 2.55 7.84 -2.39 -0.02 2.53 16 42 H 0.07 4.16 5.88 -2.38 -0.01 4.14 16 43 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.06 2.13 7.79 -2.39 -0.02 2.11 16 46 H 0.03 1.42 8.06 -2.39 -0.02 1.40 16 47 H 0.10 2.70 4.48 -2.39 -0.01 2.69 16 48 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -73.38 384.29 2.11 -71.27 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.96 Total: 19.34 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 7.21 Total: 17.57 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.55 Total: -123.22 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.53 Total: -32.57 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.38 2.11 -71.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071148760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.002 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds