Wall clock time and date at job start Wed Apr 1 2020 03:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38628 * 120.47120 * 2 1 4 4 C 1.38578 * 118.48898 * 180.02562 * 3 2 1 5 5 C 1.38597 * 119.35315 * 359.97438 * 4 3 2 6 6 N 1.31499 * 120.90168 * 0.02562 * 5 4 3 7 7 C 1.32738 * 121.64048 * 359.97438 * 6 5 4 8 8 C 1.48173 * 119.72394 * 180.27986 * 7 6 5 9 9 O 1.21516 * 120.00030 * 103.73449 * 8 7 6 10 10 N 1.34780 * 119.99959 * 283.73604 * 8 7 6 11 11 C 1.47169 * 121.07707 * 4.98677 * 10 8 7 12 12 C 1.53273 * 108.57458 * 128.79428 * 11 10 8 13 13 H 1.08996 * 109.51536 * 293.04280 * 12 11 10 14 14 C 1.53010 * 109.50901 * 172.94486 * 12 11 10 15 15 O 1.43127 * 109.23187 * 52.97545 * 12 11 10 16 16 C 1.41883 * 114.35932 * 299.10623 * 15 12 11 17 17 C 1.54375 * 110.71589 * 296.75851 * 16 15 12 18 18 C 1.54461 * 102.86881 * 276.29582 * 17 16 15 19 19 N 1.47087 * 107.29652 * 338.49483 * 18 17 16 20 20 C 1.36938 * 125.62884 * 178.98687 * 19 18 17 21 21 H 1.07999 * 119.99402 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00166 * 0.02799 * 20 19 18 23 23 N 1.31619 * 119.99789 * 359.97438 * 22 20 19 24 24 Si 1.86789 * 119.99890 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47490 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47189 * 120.00281 * 24 22 20 27 27 H 1.48502 * 109.47176 * 239.99823 * 24 22 20 28 28 C 1.47578 * 108.73743 * 359.02601 * 19 18 17 29 29 C 1.47333 * 121.08029 * 184.70944 * 10 8 7 30 30 H 1.08996 * 109.47596 * 274.74419 * 1 2 3 31 31 H 1.09002 * 109.47112 * 34.74561 * 1 2 3 32 32 H 1.09004 * 109.47227 * 154.74090 * 1 2 3 33 33 H 1.08007 * 120.75575 * 0.03308 * 3 2 1 34 34 H 1.08004 * 120.32604 * 180.02562 * 4 3 2 35 35 H 1.08003 * 119.55122 * 180.02562 * 5 4 3 36 36 H 1.08995 * 109.61664 * 248.52241 * 11 10 8 37 37 H 1.08999 * 109.61744 * 8.88422 * 11 10 8 38 38 H 1.08999 * 109.46763 * 60.00580 * 14 12 11 39 39 H 1.08997 * 109.46966 * 180.02562 * 14 12 11 40 40 H 1.08991 * 109.46978 * 300.00111 * 14 12 11 41 41 H 1.09002 * 110.73249 * 34.64005 * 17 16 15 42 42 H 1.08998 * 110.73542 * 157.94737 * 17 16 15 43 43 H 1.08994 * 109.87877 * 97.92540 * 18 17 16 44 44 H 1.09003 * 109.87683 * 218.92740 * 18 17 16 45 45 H 0.96999 * 119.99937 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.37249 * 264.46899 * 28 19 18 47 47 H 1.08996 * 110.37190 * 142.12750 * 28 19 18 48 48 H 1.09006 * 109.67539 * 348.91226 * 29 10 8 49 49 H 1.08995 * 109.67679 * 109.45473 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5949 1.1469 -0.0005 5 6 4.2321 -0.0839 -0.0005 6 7 3.5406 -1.2024 -0.0005 7 6 2.2132 -1.2004 0.0000 8 6 1.4766 -2.4860 0.0063 9 8 0.9582 -2.8842 1.0306 10 7 1.3816 -3.2138 -1.1241 11 6 2.0902 -2.8102 -2.3493 12 6 2.8847 -4.0121 -2.8722 13 1 3.6835 -4.2535 -2.1711 14 6 3.4877 -3.6715 -4.2366 15 8 2.0079 -5.1358 -3.0033 16 6 1.4045 -5.5521 -1.7885 17 6 2.4736 -6.0357 -0.7853 18 6 2.7060 -7.5023 -1.2107 19 7 1.5171 -7.9334 -1.9619 20 6 1.3362 -9.1662 -2.5300 21 1 0.4235 -9.3859 -3.0639 22 6 2.3258 -10.1333 -2.4195 23 7 3.4382 -9.8653 -1.7692 24 14 2.0786 -11.8151 -3.1939 25 1 0.7534 -11.8624 -3.8623 26 1 3.1475 -12.0611 -4.1949 27 1 2.1381 -12.8591 -2.1395 28 6 0.5520 -6.8177 -2.0030 29 6 0.5700 -4.4425 -1.1718 30 1 -0.3634 0.0850 1.0241 31 1 -0.3633 0.8444 -0.5857 32 1 -0.3634 -0.9294 -0.4385 33 1 1.6901 2.1415 0.0005 34 1 4.1722 2.0597 -0.0001 35 1 5.3114 -0.1250 -0.0005 36 1 1.3684 -2.4931 -3.1019 37 1 2.7700 -1.9883 -2.1249 38 1 4.1521 -2.8132 -4.1360 39 1 4.0521 -4.5267 -4.6081 40 1 2.6883 -3.4320 -4.9376 41 1 3.3899 -5.4544 -0.8878 42 1 2.0955 -5.9853 0.2357 43 1 3.5896 -7.5686 -1.8453 44 1 2.8362 -8.1281 -0.3277 45 1 4.1299 -10.5410 -1.6923 46 1 -0.1818 -6.9211 -1.2037 47 1 0.0556 -6.7810 -2.9726 48 1 0.2734 -4.7258 -0.1618 49 1 -0.3174 -4.2727 -1.7814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071151650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:28 Heat of formation + Delta-G solvation = -23.209728 kcal Electronic energy + Delta-G solvation = -31838.745969 eV Core-core repulsion = 27766.204218 eV Total energy + Delta-G solvation = -4072.541751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.23080 -41.16797 -39.68992 -38.00897 -35.92318 -34.83509 -34.69002 -33.16955 -32.89815 -31.14452 -30.17640 -28.58389 -27.74490 -27.33972 -25.99550 -24.69874 -23.23801 -23.20497 -22.07719 -21.39217 -20.38958 -18.98224 -18.85016 -18.15355 -17.75448 -17.55532 -16.80387 -16.57967 -16.29539 -15.95684 -15.81592 -15.50103 -15.35358 -15.22889 -15.04957 -14.67401 -14.21707 -14.06566 -14.01957 -13.87926 -13.74633 -13.62444 -13.46372 -13.19981 -13.07451 -13.02997 -12.84631 -12.80986 -12.72938 -12.29716 -12.09523 -11.98440 -11.88406 -11.79074 -11.65286 -11.28078 -10.98353 -10.77376 -10.72632 -10.47189 -9.97239 -9.67405 -8.92803 -7.84713 -5.21120 -0.15245 0.24775 1.23057 1.45376 1.47430 1.57873 1.63755 2.48501 2.55424 2.65517 3.01923 3.33580 3.42807 3.52206 3.59885 3.75885 3.81679 3.82829 3.87832 3.97029 3.97595 4.05487 4.13860 4.29859 4.33020 4.41842 4.46355 4.49822 4.53319 4.63096 4.64450 4.70137 4.72496 4.74366 4.81206 4.90600 4.98988 5.04688 5.06522 5.12386 5.15406 5.19444 5.25899 5.42544 5.54846 5.65333 5.68204 6.07411 6.15686 6.32102 6.75112 6.86309 7.07355 7.74016 8.39508 9.26610 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.002846 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.792330 B = 9836.815611 C =10115.981426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 C -0.072 4.072 4 C -0.137 4.137 5 C 0.084 3.916 6 N -0.491 5.491 7 C 0.063 3.937 8 C 0.581 3.419 9 O -0.566 6.566 10 N -0.597 5.597 11 C 0.093 3.907 12 C 0.065 3.935 13 H 0.046 0.954 14 C -0.133 4.133 15 O -0.365 6.365 16 C 0.109 3.891 17 C -0.151 4.151 18 C 0.201 3.799 19 N -0.620 5.620 20 C -0.237 4.237 21 H 0.088 0.912 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.983 3.017 25 H -0.262 1.262 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.148 3.852 29 C 0.104 3.896 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.185 0.815 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.007 0.993 44 H 0.004 0.996 45 H 0.245 0.755 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.093 0.907 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 30.365 -1.123 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.098 4.098 4 C -0.157 4.157 5 C -0.075 4.075 6 N -0.201 5.201 7 C -0.075 4.075 8 C 0.368 3.632 9 O -0.444 6.444 10 N -0.329 5.329 11 C -0.030 4.030 12 C 0.007 3.993 13 H 0.064 0.936 14 C -0.190 4.190 15 O -0.285 6.285 16 C 0.067 3.933 17 C -0.189 4.189 18 C 0.076 3.924 19 N -0.347 5.347 20 C -0.366 4.366 21 H 0.106 0.894 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.811 3.189 25 H -0.186 1.186 26 H -0.220 1.220 27 H -0.220 1.220 28 C 0.022 3.978 29 C -0.018 4.018 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.196 0.804 34 H 0.198 0.802 35 H 0.202 0.798 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.022 0.978 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.964 29.046 -0.788 29.123 hybrid contribution 0.144 -0.860 0.312 0.927 sum -1.820 28.185 -0.476 28.248 Atomic orbital electron populations 1.20840 0.88969 1.03635 1.03647 1.21031 0.98449 0.92606 0.98645 1.21920 0.94579 0.98101 0.95154 1.22776 0.95319 1.00385 0.97170 1.23377 1.01621 0.87259 0.95254 1.67590 1.06595 1.34114 1.11835 1.20618 0.90886 0.92629 1.03342 1.18402 0.78894 0.83430 0.82450 1.90771 1.49835 1.71275 1.32541 1.48149 1.48366 1.24720 1.11682 1.22532 0.96912 0.97701 0.85818 1.22652 0.91595 0.85348 0.99716 0.93643 1.21684 1.01420 1.02441 0.93464 1.87878 1.61949 1.48792 1.29852 1.22014 0.92971 0.93383 0.84908 1.23169 0.99539 0.97476 0.98748 1.20710 0.89158 0.89439 0.93124 1.44715 1.16363 1.10566 1.63010 1.19537 1.01872 0.88174 1.26998 0.89415 1.25725 0.96350 1.02476 1.01783 1.70227 1.08250 1.34198 1.47762 0.84933 0.77740 0.78973 0.77220 1.18576 1.21993 1.22002 1.21531 0.91573 0.84578 1.00073 1.21953 0.93842 0.82959 1.03095 0.90261 0.87498 0.93238 0.80449 0.80183 0.79805 0.88344 0.88048 0.88294 0.92829 0.90436 0.91563 0.91634 0.97435 0.97760 0.94542 0.93041 0.92357 0.88913 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.71 71.24 0.69 -1.01 16 2 C -0.10 -1.84 5.93 -19.52 -0.12 -1.96 16 3 C -0.07 -0.73 9.87 22.44 0.22 -0.51 16 4 C -0.14 -1.20 10.11 22.44 0.23 -0.98 16 5 C 0.08 1.25 11.18 84.83 0.95 2.20 16 6 N -0.49 -11.87 9.55 -184.91 -1.77 -13.64 16 7 C 0.06 1.58 4.91 41.90 0.21 1.78 16 8 C 0.58 18.13 5.73 86.88 0.50 18.63 16 9 O -0.57 -21.71 16.59 -3.77 -0.06 -21.78 16 10 N -0.60 -17.31 2.95 -822.54 -2.43 -19.74 16 11 C 0.09 2.21 5.79 86.34 0.50 2.71 16 12 C 0.06 1.90 3.19 30.69 0.10 2.00 16 13 H 0.05 1.53 6.22 -2.39 -0.01 1.52 16 14 C -0.13 -2.98 9.57 71.99 0.69 -2.30 16 15 O -0.37 -13.74 9.93 -148.95 -1.48 -15.22 16 16 C 0.11 4.14 0.84 -10.31 -0.01 4.13 16 17 C -0.15 -6.59 5.86 31.56 0.18 -6.41 16 18 C 0.20 11.03 5.38 86.76 0.47 11.50 16 19 N -0.62 -34.07 3.40 -692.78 -2.36 -36.43 16 20 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 21 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 22 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 23 N -0.96 -60.66 10.31 21.65 0.22 -60.43 16 24 Si 0.98 47.62 29.55 68.60 2.03 49.64 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 28 C 0.15 6.40 6.42 86.54 0.56 6.96 16 29 C 0.10 3.28 5.28 85.86 0.45 3.73 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.05 0.94 6.92 -2.38 -0.02 0.92 16 33 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 34 H 0.18 0.13 8.06 -2.91 -0.02 0.10 16 35 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 2.19 5.92 -2.39 -0.01 2.18 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 2.83 6.07 -2.39 -0.01 2.81 16 42 H 0.06 2.84 7.81 -2.39 -0.02 2.82 16 43 H 0.01 0.46 7.38 -2.39 -0.02 0.44 16 44 H 0.00 0.26 7.50 -2.39 -0.02 0.24 16 45 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.05 2.09 7.99 -2.39 -0.02 2.07 16 47 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.09 3.16 6.82 -2.38 -0.02 3.14 16 49 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -82.86 387.23 2.05 -80.81 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.95 Total: 13.09 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.94 Total: 23.70 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -6.33 Total: -130.24 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.54 Total: -36.99 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -82.86 2.05 -80.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071151650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.601 kcal (2) G-P(sol) polarization free energy of solvation -82.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds