Wall clock time and date at job start Wed Apr 1 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38090 * 119.58506 * 2 1 4 4 C 1.38785 * 119.28684 * 179.74499 * 3 2 1 5 5 C 1.50700 * 120.75776 * 180.25312 * 4 3 2 6 6 C 1.38427 * 118.48409 * 0.49219 * 4 3 2 7 7 C 1.50702 * 120.44366 * 179.75616 * 6 4 3 8 8 C 1.50699 * 109.47129 * 269.72701 * 7 6 4 9 9 O 1.21276 * 120.00146 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99701 * 179.97438 * 8 7 6 11 11 C 1.47853 * 134.36072 * 180.02562 * 10 8 7 12 12 C 1.52553 * 85.66560 * 156.40881 * 11 10 8 13 13 C 1.47844 * 134.36800 * 0.05774 * 10 8 7 14 14 C 1.53855 * 115.94160 * 140.70114 * 12 11 10 15 15 C 1.55157 * 101.40978 * 163.66434 * 14 12 11 16 16 N 1.47549 * 105.00403 * 324.35060 * 15 14 12 17 17 C 1.36940 * 125.65391 * 203.90644 * 16 15 14 18 18 H 1.08001 * 119.99535 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00356 * 0.02562 * 17 16 15 20 20 N 1.31614 * 120.00050 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99685 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47154 * 60.00534 * 21 19 17 23 23 H 1.48506 * 109.46773 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47449 * 299.99776 * 21 19 17 25 25 C 1.47354 * 108.68084 * 23.92541 * 16 15 14 26 26 C 1.38869 * 119.11279 * 359.48829 * 6 4 3 27 27 O 1.35686 * 119.68378 * 180.29502 * 26 6 4 28 28 N 1.31938 * 119.58278 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47457 * 270.02364 * 1 2 3 30 30 H 1.09004 * 109.46779 * 30.02883 * 1 2 3 31 31 H 1.09002 * 109.46846 * 150.02072 * 1 2 3 32 32 H 1.07998 * 120.35584 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46912 * 270.24211 * 5 4 3 34 34 H 1.08993 * 109.47365 * 30.24637 * 5 4 3 35 35 H 1.08998 * 109.47051 * 150.24689 * 5 4 3 36 36 H 1.08997 * 109.47241 * 149.72606 * 7 6 4 37 37 H 1.09008 * 109.47026 * 29.72611 * 7 6 4 38 38 H 1.08997 * 113.84559 * 42.22078 * 11 10 8 39 39 H 1.09006 * 113.95431 * 270.60749 * 11 10 8 40 40 H 1.09001 * 113.84457 * 89.40266 * 13 10 8 41 41 H 1.09002 * 113.83937 * 317.77390 * 13 10 8 42 42 H 1.09001 * 111.03528 * 45.63184 * 14 12 11 43 43 H 1.09000 * 111.04046 * 281.69400 * 14 12 11 44 44 H 1.08998 * 110.33591 * 83.23420 * 15 14 12 45 45 H 1.09004 * 110.33316 * 205.47085 * 15 14 12 46 46 H 0.96997 * 120.00055 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.98213 * 238.60839 * 25 16 15 48 48 H 1.08997 * 109.98227 * 117.31019 * 25 16 15 49 49 H 0.96700 * 113.99883 * 89.99772 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1936 0.0054 5 6 4.3540 2.4846 0.0113 6 6 4.2304 -0.0265 0.0001 7 6 5.7363 -0.0858 0.0001 8 6 6.2382 -0.1061 -1.4207 9 8 5.4507 -0.0750 -2.3425 10 7 7.5623 -0.1578 -1.6669 11 6 8.3849 -0.1901 -2.8950 12 6 9.5016 0.3756 -2.0231 13 6 8.7708 -0.2056 -0.8167 14 6 10.9108 -0.1819 -2.2886 15 6 11.7978 0.8751 -1.5792 16 7 11.1084 2.1612 -1.7981 17 6 11.6981 3.3969 -1.7757 18 1 11.1038 4.2820 -1.9482 19 6 13.0597 3.5119 -1.5313 20 7 13.7839 2.4333 -1.3206 21 14 13.8639 5.1977 -1.5001 22 1 13.2376 6.0253 -0.4379 23 1 15.3147 5.0489 -1.2201 24 1 13.6787 5.8590 -2.8167 25 6 9.6801 1.8952 -2.0443 26 6 3.4802 -1.1951 0.0006 27 8 4.1092 -2.3973 0.0015 28 7 2.1583 -1.1474 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6478 2.1356 -0.0004 33 1 4.5417 2.8004 -1.0149 34 1 3.7790 3.2527 0.5284 35 1 5.3037 2.3345 0.5246 36 1 6.0643 -0.9892 0.5143 37 1 6.1344 0.7895 0.5137 38 1 8.0434 0.4936 -3.6722 39 1 8.5835 -1.1947 -3.2684 40 1 9.0861 -1.2157 -0.5552 41 1 8.7329 0.4661 0.0410 42 1 11.1228 -0.2169 -3.3572 43 1 11.0347 -1.1650 -1.8344 44 1 11.8658 0.6585 -0.5131 45 1 12.7916 0.8972 -2.0263 46 1 14.7354 2.5136 -1.1502 47 1 9.3899 2.2908 -3.0176 48 1 9.0757 2.3522 -1.2608 49 1 4.2912 -2.7453 0.8852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072909511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:05 Heat of formation + Delta-G solvation = 22.811326 kcal Electronic energy + Delta-G solvation = -30412.119582 eV Core-core repulsion = 26341.573454 eV Total energy + Delta-G solvation = -4070.546128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10908 -40.39466 -38.25686 -37.48396 -35.63042 -34.92903 -32.31788 -32.10543 -30.77495 -29.56467 -28.36678 -27.90227 -26.46862 -26.10288 -25.31293 -23.56243 -22.81492 -21.15200 -20.38782 -19.22931 -18.55545 -18.26617 -17.47005 -17.09009 -16.69201 -16.23822 -15.63170 -15.47491 -15.21750 -14.80320 -14.42182 -14.26981 -13.99300 -13.81384 -13.60895 -13.48203 -13.17417 -13.10464 -12.92828 -12.64817 -12.55664 -12.16360 -12.14825 -12.02498 -11.94855 -11.72357 -11.66478 -11.56946 -11.33006 -11.00924 -10.82834 -10.46132 -10.15379 -10.09617 -9.94291 -9.75891 -9.64815 -9.58513 -9.39960 -8.81784 -8.69325 -8.53763 -6.89212 -5.70064 -3.11746 0.78235 1.00666 2.72730 2.89517 3.28465 3.37489 3.42085 3.43033 3.50671 4.21963 4.37549 4.41639 4.53397 4.61383 4.62892 4.66877 4.91466 4.98565 5.09095 5.12911 5.18129 5.21120 5.28416 5.34847 5.40984 5.44980 5.49652 5.52115 5.58814 5.63951 5.66044 5.75208 5.79855 5.80938 5.86892 5.93783 6.09279 6.14091 6.25241 6.35654 6.47636 6.53431 6.65655 6.70860 7.28874 7.44361 7.57291 7.76013 7.80281 7.82676 8.26374 8.30887 9.17204 9.77566 10.42141 11.33827 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.002336 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.599480 B =11981.109780 C =12898.056805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.183 4.183 4 C -0.009 4.009 5 C -0.122 4.122 6 C -0.136 4.136 7 C -0.090 4.090 8 C 0.541 3.459 9 O -0.540 6.540 10 N -0.641 5.641 11 C 0.123 3.877 12 C -0.102 4.102 13 C 0.117 3.883 14 C -0.132 4.132 15 C 0.154 3.846 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.164 3.836 26 C 0.332 3.668 27 O -0.477 6.477 28 N -0.509 5.509 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.013 0.987 45 H 0.106 0.894 46 H 0.253 0.747 47 H 0.029 0.971 48 H 0.023 0.977 49 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.715 -6.568 6.369 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.017 4.017 5 C -0.179 4.179 6 C -0.140 4.140 7 C -0.130 4.130 8 C 0.330 3.670 9 O -0.418 6.418 10 N -0.377 5.377 11 C 0.001 3.999 12 C -0.103 4.103 13 C -0.005 4.005 14 C -0.171 4.171 15 C 0.029 3.971 16 N -0.331 5.331 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.038 3.962 26 C 0.152 3.848 27 O -0.283 6.283 28 N -0.228 5.228 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.031 0.969 45 H 0.124 0.876 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.041 0.959 49 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -20.588 -7.188 5.352 22.454 hybrid contribution 0.970 1.340 0.577 1.752 sum -19.618 -5.848 5.928 21.313 Atomic orbital electron populations 1.20729 0.88548 1.03659 1.03094 1.20955 0.96682 0.87206 0.93958 1.21785 0.93866 0.99372 1.05284 1.20088 0.93740 0.94926 0.92949 1.20925 0.99977 0.93287 1.03662 1.20143 0.95478 0.92905 1.05437 1.20414 0.91526 1.05314 0.95713 1.19957 0.80376 0.75993 0.90689 1.90705 1.54206 1.50385 1.46454 1.50212 1.03616 1.72893 1.10989 1.23056 0.86559 1.00876 0.89458 1.22423 0.94968 0.98245 0.94656 1.23174 0.80753 1.00908 0.95689 1.22850 0.93566 0.99252 1.01469 1.21972 0.97308 0.81601 0.96225 1.44605 1.01580 1.03118 1.83758 1.19014 0.91384 0.83382 1.41355 0.90592 1.24775 0.96280 0.97474 1.02036 1.69774 1.06214 1.25897 1.55194 0.86156 0.78385 0.83101 0.77869 1.21238 1.21558 1.21146 1.20795 0.87936 0.89474 0.97988 1.18810 0.86610 0.84694 0.94638 1.84853 1.76572 1.33524 1.33364 1.66954 1.09447 1.30715 1.15728 0.90292 0.90485 0.90397 0.84444 0.89809 0.90648 0.90613 0.87969 0.87629 0.90155 0.89784 0.89526 0.89789 0.91414 0.91865 0.96875 0.87586 0.93646 0.95356 0.95934 0.74690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.17 36.01 0.37 -0.40 16 2 C 0.15 1.66 6.78 -82.60 -0.56 1.10 16 3 C -0.18 -1.88 9.44 -39.43 -0.37 -2.25 16 4 C -0.01 -0.11 5.91 -104.35 -0.62 -0.72 16 5 C -0.12 -1.15 9.67 36.01 0.35 -0.80 16 6 C -0.14 -1.70 4.40 -104.32 -0.46 -2.16 16 7 C -0.09 -1.02 5.00 -29.03 -0.15 -1.17 16 8 C 0.54 8.27 8.05 -10.99 -0.09 8.18 16 9 O -0.54 -10.46 16.76 5.56 0.09 -10.37 16 10 N -0.64 -9.24 3.62 -185.66 -0.67 -9.91 16 11 C 0.12 1.78 8.17 -3.53 -0.03 1.75 16 12 C -0.10 -1.60 0.97 -154.72 -0.15 -1.75 16 13 C 0.12 1.53 7.87 -3.53 -0.03 1.51 16 14 C -0.13 -2.23 6.45 -25.14 -0.16 -2.39 16 15 C 0.15 3.46 5.90 -2.33 -0.01 3.44 16 16 N -0.60 -14.69 3.41 -170.35 -0.58 -15.27 16 17 C -0.22 -6.01 10.28 -15.06 -0.15 -6.16 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -25.93 10.09 55.49 0.56 -25.37 16 21 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 C 0.16 3.24 6.74 -3.57 -0.02 3.22 16 26 C 0.33 4.41 7.72 -17.13 -0.13 4.28 16 27 O -0.48 -5.64 12.62 -18.76 -0.24 -5.88 16 28 N -0.51 -6.86 10.30 -9.55 -0.10 -6.96 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.08 0.67 6.07 -51.93 -0.32 0.36 16 36 H 0.10 0.95 7.55 -51.93 -0.39 0.56 16 37 H 0.11 1.03 6.06 -51.92 -0.31 0.71 16 38 H 0.08 1.23 8.02 -51.93 -0.42 0.81 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 0.96 8.02 -51.93 -0.42 0.55 16 41 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.91 7.97 -51.93 -0.41 0.49 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.11 2.74 5.89 -51.93 -0.31 2.43 16 46 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 48 H 0.02 0.45 7.87 -51.93 -0.41 0.04 16 49 H 0.40 2.41 9.06 45.56 0.41 2.83 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -35.45 398.46 -9.02 -44.47 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.75 Total: 1.51 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.32 Total: 5.30 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.79 Total: -57.51 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.14 Total: -16.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.45 -9.02 -44.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072909511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.276 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds