Wall clock time and date at job start Wed Apr 1 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38090 * 119.58506 * 2 1 4 4 C 1.38785 * 119.28684 * 179.74499 * 3 2 1 5 5 C 1.50700 * 120.75776 * 180.25312 * 4 3 2 6 6 C 1.38427 * 118.48409 * 0.49219 * 4 3 2 7 7 C 1.50702 * 120.44366 * 179.75616 * 6 4 3 8 8 C 1.50699 * 109.47129 * 269.72701 * 7 6 4 9 9 O 1.21276 * 120.00146 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99701 * 179.97438 * 8 7 6 11 11 C 1.47853 * 134.36072 * 180.02562 * 10 8 7 12 12 C 1.52553 * 85.66560 * 156.40881 * 11 10 8 13 13 C 1.47844 * 134.36800 * 0.05774 * 10 8 7 14 14 C 1.53855 * 115.94160 * 140.70114 * 12 11 10 15 15 C 1.55157 * 101.40978 * 163.66434 * 14 12 11 16 16 N 1.47549 * 105.00403 * 324.35060 * 15 14 12 17 17 C 1.36940 * 125.65391 * 203.90644 * 16 15 14 18 18 H 1.08001 * 119.99535 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00356 * 0.02562 * 17 16 15 20 20 N 1.31614 * 120.00050 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99685 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47154 * 60.00534 * 21 19 17 23 23 H 1.48506 * 109.46773 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47449 * 299.99776 * 21 19 17 25 25 C 1.47354 * 108.68084 * 23.92541 * 16 15 14 26 26 C 1.38869 * 119.11279 * 359.48829 * 6 4 3 27 27 O 1.35686 * 119.68378 * 180.29502 * 26 6 4 28 28 N 1.31938 * 119.58278 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47457 * 270.02364 * 1 2 3 30 30 H 1.09004 * 109.46779 * 30.02883 * 1 2 3 31 31 H 1.09002 * 109.46846 * 150.02072 * 1 2 3 32 32 H 1.07998 * 120.35584 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46912 * 270.24211 * 5 4 3 34 34 H 1.08993 * 109.47365 * 30.24637 * 5 4 3 35 35 H 1.08998 * 109.47051 * 150.24689 * 5 4 3 36 36 H 1.08997 * 109.47241 * 149.72606 * 7 6 4 37 37 H 1.09008 * 109.47026 * 29.72611 * 7 6 4 38 38 H 1.08997 * 113.84559 * 42.22078 * 11 10 8 39 39 H 1.09006 * 113.95431 * 270.60749 * 11 10 8 40 40 H 1.09001 * 113.84457 * 89.40266 * 13 10 8 41 41 H 1.09002 * 113.83937 * 317.77390 * 13 10 8 42 42 H 1.09001 * 111.03528 * 45.63184 * 14 12 11 43 43 H 1.09000 * 111.04046 * 281.69400 * 14 12 11 44 44 H 1.08998 * 110.33591 * 83.23420 * 15 14 12 45 45 H 1.09004 * 110.33316 * 205.47085 * 15 14 12 46 46 H 0.96997 * 120.00055 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.98213 * 238.60839 * 25 16 15 48 48 H 1.08997 * 109.98227 * 117.31019 * 25 16 15 49 49 H 0.96700 * 113.99883 * 89.99772 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1936 0.0054 5 6 4.3540 2.4846 0.0113 6 6 4.2304 -0.0265 0.0001 7 6 5.7363 -0.0858 0.0001 8 6 6.2382 -0.1061 -1.4207 9 8 5.4507 -0.0750 -2.3425 10 7 7.5623 -0.1578 -1.6669 11 6 8.3849 -0.1901 -2.8950 12 6 9.5016 0.3756 -2.0231 13 6 8.7708 -0.2056 -0.8167 14 6 10.9108 -0.1819 -2.2886 15 6 11.7978 0.8751 -1.5792 16 7 11.1084 2.1612 -1.7981 17 6 11.6981 3.3969 -1.7757 18 1 11.1038 4.2820 -1.9482 19 6 13.0597 3.5119 -1.5313 20 7 13.7839 2.4333 -1.3206 21 14 13.8639 5.1977 -1.5001 22 1 13.2376 6.0253 -0.4379 23 1 15.3147 5.0489 -1.2201 24 1 13.6787 5.8590 -2.8167 25 6 9.6801 1.8952 -2.0443 26 6 3.4802 -1.1951 0.0006 27 8 4.1092 -2.3973 0.0015 28 7 2.1583 -1.1474 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6478 2.1356 -0.0004 33 1 4.5417 2.8004 -1.0149 34 1 3.7790 3.2527 0.5284 35 1 5.3037 2.3345 0.5246 36 1 6.0643 -0.9892 0.5143 37 1 6.1344 0.7895 0.5137 38 1 8.0434 0.4936 -3.6722 39 1 8.5835 -1.1947 -3.2684 40 1 9.0861 -1.2157 -0.5552 41 1 8.7329 0.4661 0.0410 42 1 11.1228 -0.2169 -3.3572 43 1 11.0347 -1.1650 -1.8344 44 1 11.8658 0.6585 -0.5131 45 1 12.7916 0.8972 -2.0263 46 1 14.7354 2.5136 -1.1502 47 1 9.3899 2.2908 -3.0176 48 1 9.0757 2.3522 -1.2608 49 1 4.2912 -2.7453 0.8852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072909511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:04 Heat of formation + Delta-G solvation = -3.227925 kcal Electronic energy + Delta-G solvation = -30413.248728 eV Core-core repulsion = 26341.573454 eV Total energy + Delta-G solvation = -4071.675275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.05412 -41.52185 -39.52243 -38.30674 -37.22797 -35.78862 -34.09428 -32.96300 -31.84863 -31.03647 -29.70519 -28.69032 -27.74082 -27.33627 -26.54925 -25.07182 -23.69724 -22.18237 -21.94724 -20.42015 -19.54632 -19.38687 -18.81498 -18.28778 -17.96488 -17.33754 -16.84804 -16.53256 -16.48692 -16.19777 -15.74652 -15.53455 -15.17681 -14.98119 -14.48973 -14.39953 -14.16859 -14.02609 -13.87844 -13.84151 -13.76418 -13.50930 -13.22308 -13.12834 -12.93812 -12.85804 -12.81625 -12.71640 -12.57935 -12.50388 -12.45679 -12.03992 -11.91249 -11.74150 -11.52352 -11.30063 -10.84904 -10.68519 -10.46140 -10.38966 -9.72451 -9.62905 -8.85431 -7.74722 -5.18247 -0.03854 0.17609 1.48666 1.50688 1.57097 1.60472 1.80864 2.50825 2.52484 2.67233 3.27992 3.39587 3.42353 3.55009 3.65335 3.69464 3.75335 3.82925 3.87145 4.17084 4.18909 4.20300 4.34462 4.42409 4.46323 4.52484 4.57164 4.60721 4.64096 4.67816 4.72889 4.78297 4.80079 4.82266 4.88815 4.98371 4.99039 5.09462 5.13259 5.17791 5.20612 5.23055 5.31243 5.49010 5.64705 5.72308 5.87771 6.36028 6.60240 6.70038 6.94736 7.11929 7.14793 7.81297 8.44559 9.26288 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.002336 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.599480 B =11981.109780 C =12898.056805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.136 3.864 3 C -0.185 4.185 4 C -0.021 4.021 5 C -0.120 4.120 6 C -0.153 4.153 7 C -0.081 4.081 8 C 0.537 3.463 9 O -0.588 6.588 10 N -0.642 5.642 11 C 0.124 3.876 12 C -0.097 4.097 13 C 0.128 3.872 14 C -0.114 4.114 15 C 0.154 3.846 16 N -0.626 5.626 17 C -0.239 4.239 18 H 0.075 0.925 19 C -0.063 4.063 20 N -0.945 5.945 21 Si 0.976 3.024 22 H -0.279 1.279 23 H -0.293 1.293 24 H -0.281 1.281 25 C 0.162 3.838 26 C 0.315 3.685 27 O -0.491 6.491 28 N -0.539 5.539 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.167 0.833 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.099 0.901 44 H -0.003 1.003 45 H 0.069 0.931 46 H 0.247 0.753 47 H 0.018 0.982 48 H 0.023 0.977 49 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.921 -6.693 7.430 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.001 4.001 3 C -0.205 4.205 4 C -0.029 4.029 5 C -0.176 4.176 6 C -0.157 4.157 7 C -0.121 4.121 8 C 0.328 3.672 9 O -0.469 6.469 10 N -0.376 5.376 11 C 0.002 3.998 12 C -0.098 4.098 13 C 0.007 3.993 14 C -0.152 4.152 15 C 0.030 3.970 16 N -0.352 5.352 17 C -0.368 4.368 18 H 0.093 0.907 19 C -0.256 4.256 20 N -0.594 5.594 21 Si 0.804 3.196 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.207 1.207 25 C 0.037 3.963 26 C 0.136 3.864 27 O -0.301 6.301 28 N -0.259 5.259 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.015 0.985 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.041 0.959 49 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -21.797 -7.327 6.436 23.879 hybrid contribution 1.309 1.400 0.226 1.930 sum -20.487 -5.928 6.661 22.344 Atomic orbital electron populations 1.20826 0.86212 1.04305 1.04382 1.21603 0.98353 0.87024 0.93094 1.22142 0.93717 1.00350 1.04252 1.20439 0.94569 0.95307 0.92576 1.20945 1.00474 0.93124 1.03030 1.20297 0.95973 0.93158 1.06271 1.20430 0.91072 1.07242 0.93354 1.20589 0.80043 0.74826 0.91738 1.90681 1.55361 1.52658 1.48198 1.50255 1.03845 1.72313 1.11216 1.23076 0.85737 1.01750 0.89237 1.22247 0.94949 0.95304 0.97291 1.23290 0.78928 1.02616 0.94499 1.22678 0.92511 0.99050 1.01003 1.21783 0.96868 0.82824 0.95551 1.44893 1.03671 1.02996 1.83634 1.19339 0.91867 0.84738 1.40845 0.90704 1.25543 0.96872 1.00740 1.02424 1.70025 1.05907 1.27431 1.56071 0.85197 0.77036 0.79389 0.77964 1.20504 1.21892 1.20673 1.20880 0.85571 0.92675 0.97157 1.19048 0.86914 0.85269 0.95126 1.84788 1.76497 1.33356 1.35434 1.66999 1.09842 1.32091 1.17009 0.88563 0.88350 0.91195 0.81537 0.91328 0.88250 0.90159 0.85656 0.85845 0.91458 0.87374 0.86221 0.89112 0.91494 0.88291 0.98452 0.91277 0.94305 0.96451 0.95909 0.72330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.17 71.24 0.72 -0.59 16 2 C 0.14 2.88 6.78 42.51 0.29 3.17 16 3 C -0.19 -3.49 9.44 22.37 0.21 -3.27 16 4 C -0.02 -0.46 5.91 -19.69 -0.12 -0.57 16 5 C -0.12 -2.06 9.67 71.24 0.69 -1.37 16 6 C -0.15 -3.67 4.40 -19.67 -0.09 -3.75 16 7 C -0.08 -1.71 5.00 29.10 0.15 -1.56 16 8 C 0.54 15.68 8.05 87.66 0.71 16.38 16 9 O -0.59 -22.67 16.76 -3.02 -0.05 -22.72 16 10 N -0.64 -17.05 3.62 -859.70 -3.11 -20.16 16 11 C 0.12 3.37 8.17 85.97 0.70 4.07 16 12 C -0.10 -2.86 0.97 -52.11 -0.05 -2.91 16 13 C 0.13 2.94 7.87 85.97 0.68 3.61 16 14 C -0.11 -3.61 6.45 31.62 0.20 -3.40 16 15 C 0.15 6.97 5.90 86.92 0.51 7.48 16 16 N -0.63 -30.69 3.41 -692.87 -2.36 -33.06 16 17 C -0.24 -13.04 10.28 84.03 0.86 -12.18 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 20 N -0.94 -54.25 10.09 21.65 0.22 -54.03 16 21 Si 0.98 44.60 29.55 68.60 2.03 46.63 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C 0.16 6.36 6.74 86.22 0.58 6.94 16 26 C 0.31 8.21 7.72 84.78 0.65 8.87 16 27 O -0.49 -11.27 12.62 -90.04 -1.14 -12.41 16 28 N -0.54 -14.34 10.30 -296.97 -3.06 -17.40 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.08 1.27 6.07 -2.39 -0.01 1.26 16 36 H 0.13 1.99 7.55 -2.39 -0.02 1.97 16 37 H 0.12 2.10 6.06 -2.38 -0.01 2.08 16 38 H 0.07 2.01 8.02 -2.39 -0.02 1.99 16 39 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.12 2.07 8.02 -2.39 -0.02 2.05 16 41 H 0.09 2.01 8.01 -2.39 -0.02 2.00 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.10 2.47 7.97 -2.39 -0.02 2.45 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.07 3.66 5.89 -2.38 -0.01 3.64 16 46 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 47 H 0.02 0.72 8.00 -2.39 -0.02 0.70 16 48 H 0.02 0.90 7.87 -2.39 -0.02 0.88 16 49 H 0.42 4.66 9.06 -74.06 -0.67 3.99 16 Total: -1.00 -79.67 398.46 0.00 -79.67 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.30 Total: 15.57 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 7.17 Total: 17.90 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -8.31 Total: -124.65 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.19 Total: -35.13 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -79.67 0.00 -79.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072909511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.445 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds