Wall clock time and date at job start Wed Apr 1 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38665 * 120.78987 * 2 1 4 4 C 1.38186 * 119.16122 * 180.27299 * 3 2 1 5 5 N 1.31891 * 120.76421 * 359.71194 * 4 3 2 6 6 C 1.31857 * 121.72657 * 0.02562 * 5 4 3 7 7 C 1.38228 * 120.76061 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.41819 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47491 * 265.00509 * 8 7 6 10 10 O 1.21290 * 119.99881 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00097 * 179.72778 * 9 8 7 12 12 C 1.46842 * 120.40845 * 359.97438 * 11 9 8 13 13 C 1.52912 * 109.49682 * 232.18872 * 12 11 9 14 14 C 1.52788 * 108.89046 * 306.41529 * 13 12 11 15 15 H 1.09006 * 108.95105 * 302.95703 * 14 13 12 16 16 O 1.42595 * 111.12140 * 182.42166 * 14 13 12 17 17 C 1.43145 * 113.63357 * 176.37383 * 16 14 13 18 18 C 1.53197 * 109.73275 * 61.69264 * 17 16 14 19 19 N 1.47352 * 108.80363 * 308.78336 * 18 17 16 20 20 C 1.36939 * 121.30420 * 230.26324 * 19 18 17 21 21 H 1.07994 * 120.00230 * 152.50050 * 20 19 18 22 22 C 1.38811 * 119.99690 * 332.50433 * 20 19 18 23 23 N 1.31619 * 120.00348 * 344.73342 * 22 20 19 24 24 Si 1.86801 * 119.99982 * 164.73154 * 22 20 19 25 25 H 1.48503 * 109.47018 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46877 * 120.00013 * 24 22 20 27 27 H 1.48501 * 109.47349 * 240.00004 * 24 22 20 28 28 C 1.46873 * 117.39489 * 50.24102 * 19 18 17 29 29 H 1.09002 * 109.65780 * 68.35935 * 28 19 18 30 30 C 1.47130 * 120.40537 * 180.27548 * 11 9 8 31 31 H 1.09003 * 109.46867 * 270.29078 * 1 2 3 32 32 H 1.09003 * 109.46684 * 30.28096 * 1 2 3 33 33 H 1.09000 * 109.47229 * 150.28272 * 1 2 3 34 34 H 1.07995 * 120.42140 * 359.97438 * 3 2 1 35 35 H 1.07996 * 119.62197 * 179.72978 * 4 3 2 36 36 H 1.07996 * 119.61979 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.46997 * 145.00268 * 8 7 6 38 38 H 1.09000 * 109.46982 * 25.00600 * 8 7 6 39 39 H 1.09004 * 109.50543 * 352.18135 * 12 11 9 40 40 H 1.08997 * 109.50402 * 112.31684 * 12 11 9 41 41 H 1.09003 * 109.65244 * 186.52749 * 13 12 11 42 42 H 1.08994 * 109.53766 * 66.23901 * 13 12 11 43 43 H 1.08999 * 109.42796 * 301.61455 * 17 16 14 44 44 H 1.09003 * 109.42924 * 181.77255 * 17 16 14 45 45 H 1.09004 * 109.58333 * 188.98782 * 18 17 16 46 46 H 1.09001 * 109.58357 * 68.58356 * 18 17 16 47 47 H 0.97006 * 120.00385 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.72585 * 246.43400 * 30 11 9 49 49 H 1.09002 * 109.73318 * 7.06651 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0057 5 7 4.2404 -0.0001 -0.0055 6 6 3.5983 -1.1518 -0.0003 7 6 2.2166 -1.1909 0.0056 8 6 1.4908 -2.5116 0.0121 9 6 1.1344 -2.8960 -1.4007 10 8 1.4394 -2.1688 -2.3223 11 7 0.4812 -4.0501 -1.6407 12 6 0.1129 -4.9401 -0.5323 13 6 0.6144 -6.3546 -0.8253 14 6 0.0996 -6.7878 -2.1971 15 1 -0.9885 -6.7224 -2.2037 16 8 0.4943 -8.1252 -2.4952 17 6 -0.0291 -8.6153 -3.7341 18 6 0.4914 -7.7569 -4.8913 19 7 0.2398 -6.3386 -4.5811 20 6 -0.3729 -5.5108 -5.4836 21 1 -0.9396 -4.6592 -5.1372 22 6 -0.2657 -5.7663 -6.8438 23 7 0.6496 -6.6022 -7.2863 24 14 -1.4205 -4.9237 -8.0463 25 1 -2.3515 -4.0388 -7.3011 26 1 -0.6294 -4.1139 -9.0074 27 1 -2.1989 -5.9492 -8.7864 28 6 0.6713 -5.8475 -3.2659 29 1 1.7602 -5.8389 -3.2169 30 6 0.1342 -4.4371 -3.0172 31 1 -0.3633 0.0052 1.0277 32 1 -0.3633 0.8875 -0.5182 33 1 -0.3634 -0.8925 -0.5094 34 1 1.6968 2.1377 -0.0004 35 1 4.1584 2.0752 -0.0102 36 1 4.1585 -2.0751 0.0002 37 1 0.5805 -2.4230 0.6052 38 1 2.1338 -3.2775 0.4458 39 1 0.5661 -4.5785 0.3908 40 1 -0.9716 -4.9569 -0.4240 41 1 0.2440 -7.0401 -0.0630 42 1 1.7043 -6.3623 -0.8250 43 1 -1.1180 -8.5705 -3.7107 44 1 0.2874 -9.6484 -3.8780 45 1 -0.0288 -8.0279 -5.8100 46 1 1.5622 -7.9197 -5.0140 47 1 0.7248 -6.7805 -8.2368 48 1 -0.9489 -4.4292 -3.1396 49 1 0.5891 -3.7402 -3.7211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074268227.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:55:45 Heat of formation + Delta-G solvation = -37.348415 kcal Electronic energy + Delta-G solvation = -31399.866669 eV Core-core repulsion = 27326.711819 eV Total energy + Delta-G solvation = -4073.154850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.79213 -41.02661 -39.91558 -37.43798 -36.55937 -35.36260 -33.76577 -33.24591 -32.93480 -31.48246 -29.72291 -28.89894 -28.23221 -26.51035 -25.46219 -24.07377 -23.51816 -22.98247 -22.41945 -21.40957 -19.99325 -18.71638 -18.41884 -17.76780 -17.35900 -17.16261 -17.06673 -16.78714 -16.46367 -16.19965 -15.85247 -15.58411 -15.46332 -15.15629 -14.83328 -14.69793 -14.49859 -14.29342 -14.01810 -13.84833 -13.71448 -13.58579 -13.49535 -13.32731 -13.01079 -12.87887 -12.85589 -12.69914 -12.40436 -12.34129 -12.22604 -12.03085 -11.91895 -11.73052 -11.25017 -10.95911 -10.77236 -10.54097 -10.39744 -10.30538 -9.88529 -9.68304 -8.76573 -7.94332 -5.43076 0.16355 0.34836 1.41007 1.43129 1.53003 1.60984 1.93692 2.44158 2.81478 2.87614 3.21187 3.42931 3.49958 3.63004 3.72086 3.83161 3.88519 3.95120 4.01779 4.04948 4.10305 4.18438 4.27237 4.40711 4.46644 4.47958 4.50764 4.54670 4.57423 4.60934 4.69662 4.73939 4.76669 4.84253 4.86522 4.91090 5.01793 5.06800 5.12208 5.12665 5.20709 5.32181 5.41740 5.45079 5.52349 5.59750 5.82679 6.23955 6.33278 6.43237 7.02037 7.05437 7.18028 7.69972 8.25009 9.12014 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.003246 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.384061 B = 8623.699886 C = 9957.465571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.178 4.178 4 C 0.084 3.916 5 N -0.521 5.521 6 C 0.094 3.906 7 C -0.130 4.130 8 C -0.087 4.087 9 C 0.510 3.490 10 O -0.586 6.586 11 N -0.610 5.610 12 C 0.107 3.893 13 C -0.119 4.119 14 C 0.081 3.919 15 H 0.058 0.942 16 O -0.392 6.392 17 C 0.053 3.947 18 C 0.146 3.854 19 N -0.607 5.607 20 C -0.260 4.260 21 H 0.075 0.925 22 C -0.048 4.048 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.265 1.265 26 H -0.297 1.297 27 H -0.284 1.284 28 C 0.133 3.867 29 H 0.001 0.999 30 C 0.140 3.860 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.069 0.931 46 H -0.006 1.006 47 H 0.251 0.749 48 H 0.071 0.929 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 7.452 23.101 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.046 4.046 3 C -0.198 4.198 4 C -0.072 4.072 5 N -0.230 5.230 6 C -0.063 4.063 7 C -0.132 4.132 8 C -0.126 4.126 9 C 0.300 3.700 10 O -0.466 6.466 11 N -0.343 5.343 12 C -0.014 4.014 13 C -0.157 4.157 14 C 0.021 3.979 15 H 0.076 0.924 16 O -0.311 6.311 17 C -0.025 4.025 18 C 0.021 3.979 19 N -0.332 5.332 20 C -0.390 4.390 21 H 0.092 0.908 22 C -0.244 4.244 23 N -0.582 5.582 24 Si 0.793 3.207 25 H -0.189 1.189 26 H -0.224 1.224 27 H -0.210 1.210 28 C 0.026 3.974 29 H 0.019 0.981 30 C 0.017 3.983 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.177 0.823 35 H 0.193 0.807 36 H 0.177 0.823 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.087 0.913 46 H 0.012 0.988 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.454 7.699 22.580 23.982 hybrid contribution -0.871 0.286 -2.183 2.368 sum -3.325 7.984 20.397 22.155 Atomic orbital electron populations 1.20894 0.88793 1.03411 1.04110 1.20552 0.98005 0.92586 0.93449 1.22319 0.95464 0.99557 1.02448 1.23180 0.92704 0.96496 0.94851 1.67657 1.42218 0.99354 1.13794 1.22867 0.91753 0.96612 0.95030 1.20396 0.94782 0.95430 1.02617 1.20725 1.04079 0.95336 0.92481 1.21284 0.76276 0.80185 0.92280 1.90737 1.54859 1.52898 1.48120 1.48359 1.57306 1.21117 1.07527 1.22055 1.02470 0.87506 0.89350 1.21846 1.01953 0.97363 0.94552 1.22525 0.97974 0.82141 0.95223 0.92445 1.87747 1.75050 1.29138 1.39165 1.23156 0.97627 0.98023 0.83677 1.21297 0.96436 0.83353 0.96828 1.44350 1.69236 1.06181 1.13422 1.19478 1.23798 1.08893 0.86804 0.90770 1.25836 0.99140 1.00514 0.98892 1.70181 1.34254 1.40324 1.13414 0.85237 0.78597 0.77930 0.78915 1.18878 1.22430 1.20991 1.21465 0.94887 0.93710 0.87339 0.98089 1.21211 0.99444 0.94654 0.83034 0.87585 0.90487 0.92181 0.82292 0.80723 0.82311 0.84021 0.84582 0.84672 0.88719 0.86572 0.91472 0.93086 0.87388 0.91260 0.98801 0.94006 0.91067 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.31 71.24 0.66 -1.07 16 2 C -0.04 -0.77 5.92 -19.67 -0.12 -0.89 16 3 C -0.18 -3.39 9.82 22.36 0.22 -3.17 16 4 C 0.08 1.80 11.18 84.67 0.95 2.75 16 5 N -0.52 -13.87 10.36 -195.84 -2.03 -15.90 16 6 C 0.09 2.32 10.84 84.69 0.92 3.24 16 7 C -0.13 -2.84 4.39 -19.77 -0.09 -2.93 16 8 C -0.09 -1.44 3.52 29.10 0.10 -1.34 16 9 C 0.51 14.46 6.99 87.66 0.61 15.07 16 10 O -0.59 -23.62 15.44 -3.06 -0.05 -23.67 16 11 N -0.61 -16.76 2.99 -819.58 -2.45 -19.21 16 12 C 0.11 1.74 6.29 86.28 0.54 2.29 16 13 C -0.12 -2.53 5.81 30.49 0.18 -2.35 16 14 C 0.08 2.66 2.47 30.66 0.08 2.73 16 15 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 16 O -0.39 -14.36 10.49 -148.98 -1.56 -15.92 16 17 C 0.05 2.00 6.96 72.05 0.50 2.50 16 18 C 0.15 7.21 5.42 86.28 0.47 7.68 16 19 N -0.61 -30.99 3.04 -673.93 -2.05 -33.04 16 20 C -0.26 -14.32 8.87 84.03 0.75 -13.57 16 21 H 0.07 3.97 6.27 -2.91 -0.02 3.95 16 22 C -0.05 -2.73 4.99 84.86 0.42 -2.31 16 23 N -0.94 -56.23 11.16 21.65 0.24 -55.99 16 24 Si 0.97 45.51 29.58 68.60 2.03 47.54 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 28 C 0.13 5.67 3.03 45.04 0.14 5.81 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 C 0.14 5.43 4.49 86.25 0.39 5.82 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.09 8.10 -2.39 -0.02 1.08 16 33 H 0.06 1.06 6.35 -2.39 -0.02 1.05 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.14 1.31 6.94 -2.39 -0.02 1.29 16 38 H 0.14 1.46 7.56 -2.39 -0.02 1.44 16 39 H 0.14 0.98 5.90 -2.39 -0.01 0.96 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 44 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 45 H 0.07 3.74 6.23 -2.38 -0.01 3.73 16 46 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 47 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 48 H 0.07 2.73 7.37 -2.39 -0.02 2.71 16 49 H 0.05 2.64 6.80 -2.39 -0.02 2.62 16 Total: -1.00 -81.89 381.96 1.81 -80.09 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.95 Total: 15.85 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.72 Total: 20.25 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -6.29 Total: -124.14 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.61 Total: -39.59 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -81.89 1.81 -80.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074268227.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.738 kcal (2) G-P(sol) polarization free energy of solvation -81.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds