Wall clock time and date at job start Wed Apr 1 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36404 * 120.35160 * 2 1 4 4 C 1.40193 * 119.27031 * 180.02562 * 3 2 1 5 5 C 1.35351 * 119.94598 * 0.02562 * 4 3 2 6 6 N 1.35764 * 120.69947 * 359.97438 * 5 4 3 7 7 C 1.46505 * 119.61995 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47064 * 90.00198 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.88338 * 336.34242 * 11 10 8 13 13 C 1.53947 * 113.66574 * 107.81144 * 11 10 8 14 14 C 1.53945 * 87.29873 * 89.73840 * 13 11 10 15 15 H 1.09000 * 113.66485 * 139.20707 * 14 13 11 16 16 N 1.46501 * 113.74669 * 270.25157 * 14 13 11 17 17 C 1.36936 * 120.00257 * 252.22838 * 16 14 13 18 18 H 1.08009 * 119.99665 * 359.97438 * 17 16 14 19 19 C 1.38803 * 120.00366 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00254 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00022 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47100 * 90.00272 * 21 19 17 23 23 H 1.48503 * 109.47271 * 210.00087 * 21 19 17 24 24 H 1.48497 * 109.47217 * 330.00171 * 21 19 17 25 25 C 1.52908 * 113.66185 * 204.99846 * 11 10 8 26 26 C 1.52913 * 121.13560 * 144.70847 * 25 11 10 27 27 C 1.53955 * 86.77943 * 209.37555 * 26 25 11 28 28 C 1.52910 * 121.14090 * 36.14461 * 25 11 10 29 29 C 1.34656 * 120.75613 * 0.29634 * 6 5 4 30 30 O 1.22061 * 119.98888 * 179.70197 * 29 6 5 31 31 H 1.09000 * 109.47159 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47233 * 120.00015 * 1 2 3 33 33 H 1.09002 * 109.46730 * 240.00106 * 1 2 3 34 34 H 1.08008 * 120.36445 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.02804 * 180.02562 * 4 3 2 36 36 H 1.07993 * 119.64776 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47068 * 210.00166 * 7 6 5 38 38 H 1.09001 * 109.47372 * 330.00254 * 7 6 5 39 39 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.09005 * 113.58174 * 204.34662 * 13 11 10 41 41 H 1.09010 * 113.57629 * 335.13573 * 13 11 10 42 42 H 0.97003 * 120.00258 * 72.22745 * 16 14 13 43 43 H 0.97008 * 120.00160 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.66090 * 323.84685 * 26 25 11 45 45 H 1.08999 * 113.66200 * 94.90924 * 26 25 11 46 46 H 1.08991 * 113.58262 * 270.12704 * 27 26 25 47 47 H 1.09006 * 113.57364 * 139.33346 * 27 26 25 48 48 H 1.08997 * 113.65989 * 265.09564 * 28 25 11 49 49 H 1.08998 * 113.66035 * 36.14092 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2513 -0.0347 -0.0016 6 7 3.5635 -1.2053 -0.0016 7 6 4.2948 -2.4748 -0.0022 8 6 4.5461 -2.9104 1.4185 9 8 4.1534 -2.2275 2.3406 10 7 5.2080 -4.0584 1.6643 11 6 5.4518 -4.4821 3.0453 12 1 5.4381 -3.6523 3.7520 13 6 4.5949 -5.6837 3.4833 14 6 5.7294 -6.5877 2.9679 15 1 5.9367 -7.4409 3.6139 16 7 5.5922 -6.9607 1.5579 17 6 5.2422 -8.2406 1.2191 18 1 5.0678 -8.9751 1.9915 19 6 5.1127 -8.5941 -0.1169 20 7 4.7759 -9.8241 -0.4425 21 14 5.4151 -7.3239 -1.4528 22 1 6.8477 -7.3471 -1.8427 23 1 4.5749 -7.6401 -2.6358 24 1 5.0629 -5.9748 -0.9419 25 6 6.6645 -5.4004 3.2004 26 6 7.5576 -5.3282 4.4396 27 6 8.7086 -5.7963 3.5306 28 6 7.9194 -5.2038 2.3491 29 6 2.2170 -1.2128 -0.0066 30 8 1.6129 -2.2734 -0.0120 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 -0.3633 -0.5138 0.8900 34 1 1.6679 2.1191 -0.0004 35 1 4.1559 2.0753 -0.0001 36 1 5.3311 -0.0495 -0.0024 37 1 3.7048 -3.2337 -0.5160 38 1 5.2472 -2.3453 -0.5163 39 1 5.5224 -4.6044 0.9267 40 1 4.4457 -5.7430 4.5615 41 1 3.6667 -5.7854 2.9208 42 1 5.7492 -6.3012 0.8642 43 1 4.6850 -10.0711 -1.3762 44 1 7.6887 -4.3175 4.8260 45 1 7.2910 -6.0480 5.2135 46 1 8.8146 -6.8801 3.4844 47 1 9.6522 -5.2861 3.7243 48 1 7.9417 -5.8240 1.4530 49 1 8.1521 -4.1581 2.1479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078625515.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:55 Heat of formation + Delta-G solvation = 32.795722 kcal Electronic energy + Delta-G solvation = -31245.644977 eV Core-core repulsion = 27175.531805 eV Total energy + Delta-G solvation = -4070.113172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -41.65640 -40.75704 -38.87335 -36.96816 -35.55294 -35.19529 -33.86665 -32.48782 -31.37280 -30.56103 -28.58170 -27.32231 -25.63064 -24.85257 -24.27425 -23.36630 -22.60632 -22.18292 -20.67262 -20.28709 -18.83251 -17.63883 -17.57059 -17.40391 -17.07411 -16.39222 -15.74166 -15.54005 -15.28181 -15.11258 -14.75333 -14.62747 -14.43970 -13.99579 -13.83279 -13.55652 -13.06073 -12.95386 -12.79852 -12.67874 -12.44795 -12.35031 -12.25261 -12.06498 -12.03730 -11.94999 -11.70504 -11.52170 -11.11308 -11.06754 -10.83928 -10.44857 -10.40852 -10.16356 -10.00732 -9.92553 -9.80983 -9.62709 -9.54248 -8.99378 -8.76323 -7.97677 -7.42370 -5.88757 -3.26074 0.67336 1.78313 2.29939 2.53141 3.10199 3.16810 3.23499 3.33404 3.58699 4.33154 4.38915 4.42786 4.48773 4.59125 4.66011 4.81248 4.86051 4.87358 4.95863 4.99545 5.07180 5.10796 5.16121 5.28529 5.42419 5.47861 5.52537 5.62156 5.66108 5.74208 5.81424 5.82693 5.86488 5.90119 6.03600 6.03958 6.06026 6.17727 6.19816 6.25950 6.35918 6.45274 6.55419 6.61903 6.73123 6.87288 6.92375 7.51514 7.86639 7.95975 8.17676 8.30217 9.04988 9.76933 9.94532 11.29325 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.003679 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.367332 B = 7609.470225 C = 9064.846114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.206 4.206 3 C -0.025 4.025 4 C -0.230 4.230 5 C 0.136 3.864 6 N -0.478 5.478 7 C 0.066 3.934 8 C 0.506 3.494 9 O -0.533 6.533 10 N -0.696 5.696 11 C 0.136 3.864 12 H 0.095 0.905 13 C -0.184 4.184 14 C 0.197 3.803 15 H 0.076 0.924 16 N -0.723 5.723 17 C -0.247 4.247 18 H 0.095 0.905 19 C 0.009 3.991 20 N -0.927 5.927 21 Si 0.882 3.118 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.284 1.284 25 C -0.131 4.131 26 C -0.105 4.105 27 C -0.133 4.133 28 C -0.129 4.129 29 C 0.521 3.479 30 O -0.540 6.540 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.159 0.841 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.402 0.598 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.354 0.646 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 22.464 2.324 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.210 4.210 3 C -0.047 4.047 4 C -0.253 4.253 5 C 0.009 3.991 6 N -0.188 5.188 7 C -0.060 4.060 8 C 0.290 3.710 9 O -0.409 6.409 10 N -0.348 5.348 11 C 0.031 3.969 12 H 0.113 0.887 13 C -0.226 4.226 14 C 0.086 3.914 15 H 0.094 0.906 16 N -0.363 5.363 17 C -0.377 4.377 18 H 0.112 0.888 19 C -0.187 4.187 20 N -0.574 5.574 21 Si 0.712 3.288 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.211 1.211 25 C -0.133 4.133 26 C -0.143 4.143 27 C -0.171 4.171 28 C -0.167 4.167 29 C 0.322 3.678 30 O -0.421 6.421 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.239 0.761 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.188 0.812 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.161 21.920 2.926 22.339 hybrid contribution 0.395 0.642 -1.432 1.618 sum 3.555 22.562 1.494 22.890 Atomic orbital electron populations 1.20406 0.89082 1.01875 1.02970 1.20784 0.97850 0.91877 1.10506 1.21314 0.93889 0.97884 0.91589 1.20554 0.94640 0.97066 1.13047 1.21874 0.98341 0.84807 0.94042 1.44996 1.08020 1.06332 1.59411 1.21856 0.99658 0.87683 0.96806 1.20529 0.78101 0.81501 0.90875 1.90715 1.50290 1.54381 1.45548 1.45687 1.57108 1.22812 1.09205 1.21735 0.96488 0.96246 0.82463 0.88731 1.24252 1.00488 0.97049 1.00771 1.20821 0.90743 0.92989 0.86885 0.90558 1.42460 1.83274 1.10283 1.00322 1.19089 1.39531 0.85950 0.93108 0.88756 1.24662 1.01395 0.95992 0.96661 1.69678 1.53678 1.16896 1.17181 0.86642 0.78023 0.80989 0.83127 1.20784 1.21319 1.21125 1.23610 0.92505 0.98833 0.98383 1.22504 0.95151 1.01310 0.95320 1.22750 0.96574 1.01297 0.96434 1.22598 0.95548 1.00346 0.98174 1.16975 0.80399 0.91297 0.79160 1.90990 1.66338 1.32723 1.52013 0.91635 0.91308 0.91249 0.84960 0.83800 0.82407 0.84990 0.86067 0.76134 0.89902 0.90671 0.81173 0.92844 0.90231 0.91029 0.89763 0.92014 0.90690 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.64 36.00 0.35 -0.61 16 2 C -0.21 -2.63 5.90 -104.42 -0.62 -3.24 16 3 C -0.03 -0.24 9.72 -39.51 -0.38 -0.62 16 4 C -0.23 -1.90 10.01 -39.88 -0.40 -2.30 16 5 C 0.14 1.29 10.28 -16.84 -0.17 1.11 16 6 N -0.48 -6.31 2.07 -121.06 -0.25 -6.56 16 7 C 0.07 0.85 5.82 -5.19 -0.03 0.82 16 8 C 0.51 8.06 7.90 -10.98 -0.09 7.97 16 9 O -0.53 -10.06 16.03 5.56 0.09 -9.97 16 10 N -0.70 -10.98 4.93 -53.37 -0.26 -11.24 16 11 C 0.14 2.13 4.12 -67.49 -0.28 1.86 16 12 H 0.09 1.50 7.46 -51.93 -0.39 1.11 16 13 C -0.18 -3.18 7.68 -25.75 -0.20 -3.38 16 14 C 0.20 3.59 4.36 -67.48 -0.29 3.29 16 15 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 16 N -0.72 -15.77 4.54 -52.99 -0.24 -16.01 16 17 C -0.25 -6.63 10.45 -15.06 -0.16 -6.78 16 18 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -28.27 13.97 55.49 0.78 -27.50 16 21 Si 0.88 20.78 27.73 -169.99 -4.71 16.07 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -5.98 6.38 56.52 0.36 -5.62 16 25 C -0.13 -1.90 0.78 -154.71 -0.12 -2.02 16 26 C -0.10 -1.26 7.84 -26.28 -0.21 -1.46 16 27 C -0.13 -1.62 8.08 -25.75 -0.21 -1.83 16 28 C -0.13 -1.76 7.27 -26.28 -0.19 -1.95 16 29 C 0.52 8.34 7.39 -15.45 -0.11 8.22 16 30 O -0.54 -10.83 16.08 4.86 0.08 -10.75 16 31 H 0.06 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.13 0.83 7.95 -52.48 -0.42 0.42 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.16 0.93 8.04 -52.49 -0.42 0.51 16 37 H 0.13 1.92 7.38 -51.93 -0.38 1.54 16 38 H 0.12 1.01 8.01 -51.93 -0.42 0.60 16 39 H 0.40 6.40 6.00 -40.82 -0.25 6.16 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.52 8.14 -51.92 -0.42 1.09 16 42 H 0.35 7.40 3.00 -40.82 -0.12 7.27 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.07 1.17 7.58 -51.93 -0.39 0.77 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -35.56 397.83 -9.18 -44.75 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -7.44 Total: 15.98 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -3.21 Total: -0.76 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.02 Total: -61.31 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.17 Total: -20.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.71 Total: 16.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.56 -9.18 -44.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078625515.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.542 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds