Wall clock time and date at job start Wed Apr 1 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36404 * 120.35160 * 2 1 4 4 C 1.40193 * 119.27031 * 180.02562 * 3 2 1 5 5 C 1.35351 * 119.94598 * 0.02562 * 4 3 2 6 6 N 1.35764 * 120.69947 * 359.97438 * 5 4 3 7 7 C 1.46505 * 119.61995 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47064 * 90.00198 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.88338 * 336.34242 * 11 10 8 13 13 C 1.53947 * 113.66574 * 107.81144 * 11 10 8 14 14 C 1.53945 * 87.29873 * 89.73840 * 13 11 10 15 15 H 1.09000 * 113.66485 * 139.20707 * 14 13 11 16 16 N 1.46501 * 113.74669 * 270.25157 * 14 13 11 17 17 C 1.36936 * 120.00257 * 252.22838 * 16 14 13 18 18 H 1.08009 * 119.99665 * 359.97438 * 17 16 14 19 19 C 1.38803 * 120.00366 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00254 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00022 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47100 * 90.00272 * 21 19 17 23 23 H 1.48503 * 109.47271 * 210.00087 * 21 19 17 24 24 H 1.48497 * 109.47217 * 330.00171 * 21 19 17 25 25 C 1.52908 * 113.66185 * 204.99846 * 11 10 8 26 26 C 1.52913 * 121.13560 * 144.70847 * 25 11 10 27 27 C 1.53955 * 86.77943 * 209.37555 * 26 25 11 28 28 C 1.52910 * 121.14090 * 36.14461 * 25 11 10 29 29 C 1.34656 * 120.75613 * 0.29634 * 6 5 4 30 30 O 1.22061 * 119.98888 * 179.70197 * 29 6 5 31 31 H 1.09000 * 109.47159 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47233 * 120.00015 * 1 2 3 33 33 H 1.09002 * 109.46730 * 240.00106 * 1 2 3 34 34 H 1.08008 * 120.36445 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.02804 * 180.02562 * 4 3 2 36 36 H 1.07993 * 119.64776 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47068 * 210.00166 * 7 6 5 38 38 H 1.09001 * 109.47372 * 330.00254 * 7 6 5 39 39 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.09005 * 113.58174 * 204.34662 * 13 11 10 41 41 H 1.09010 * 113.57629 * 335.13573 * 13 11 10 42 42 H 0.97003 * 120.00258 * 72.22745 * 16 14 13 43 43 H 0.97008 * 120.00160 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.66090 * 323.84685 * 26 25 11 45 45 H 1.08999 * 113.66200 * 94.90924 * 26 25 11 46 46 H 1.08991 * 113.58262 * 270.12704 * 27 26 25 47 47 H 1.09006 * 113.57364 * 139.33346 * 27 26 25 48 48 H 1.08997 * 113.65989 * 265.09564 * 28 25 11 49 49 H 1.08998 * 113.66035 * 36.14092 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2513 -0.0347 -0.0016 6 7 3.5635 -1.2053 -0.0016 7 6 4.2948 -2.4748 -0.0022 8 6 4.5461 -2.9104 1.4185 9 8 4.1534 -2.2275 2.3406 10 7 5.2080 -4.0584 1.6643 11 6 5.4518 -4.4821 3.0453 12 1 5.4381 -3.6523 3.7520 13 6 4.5949 -5.6837 3.4833 14 6 5.7294 -6.5877 2.9679 15 1 5.9367 -7.4409 3.6139 16 7 5.5922 -6.9607 1.5579 17 6 5.2422 -8.2406 1.2191 18 1 5.0678 -8.9751 1.9915 19 6 5.1127 -8.5941 -0.1169 20 7 4.7759 -9.8241 -0.4425 21 14 5.4151 -7.3239 -1.4528 22 1 6.8477 -7.3471 -1.8427 23 1 4.5749 -7.6401 -2.6358 24 1 5.0629 -5.9748 -0.9419 25 6 6.6645 -5.4004 3.2004 26 6 7.5576 -5.3282 4.4396 27 6 8.7086 -5.7963 3.5306 28 6 7.9194 -5.2038 2.3491 29 6 2.2170 -1.2128 -0.0066 30 8 1.6129 -2.2734 -0.0120 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 -0.3633 -0.5138 0.8900 34 1 1.6679 2.1191 -0.0004 35 1 4.1559 2.0753 -0.0001 36 1 5.3311 -0.0495 -0.0024 37 1 3.7048 -3.2337 -0.5160 38 1 5.2472 -2.3453 -0.5163 39 1 5.5224 -4.6044 0.9267 40 1 4.4457 -5.7430 4.5615 41 1 3.6667 -5.7854 2.9208 42 1 5.7492 -6.3012 0.8642 43 1 4.6850 -10.0711 -1.3762 44 1 7.6887 -4.3175 4.8260 45 1 7.2910 -6.0480 5.2135 46 1 8.8146 -6.8801 3.4844 47 1 9.6522 -5.2861 3.7243 48 1 7.9417 -5.8240 1.4530 49 1 8.1521 -4.1581 2.1479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078625515.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:53 Heat of formation + Delta-G solvation = 8.935670 kcal Electronic energy + Delta-G solvation = -31246.679627 eV Core-core repulsion = 27175.531805 eV Total energy + Delta-G solvation = -4071.147822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.65027 -41.99392 -40.09978 -38.01708 -36.81208 -36.16053 -35.54584 -34.03096 -32.55247 -32.13324 -29.63600 -28.14158 -26.81190 -26.37722 -25.51347 -24.57327 -23.60789 -23.43200 -21.94296 -21.57636 -20.39335 -19.05569 -18.60227 -18.46662 -18.24422 -17.39190 -16.92037 -16.66285 -16.61300 -16.46956 -16.22889 -15.79343 -15.50254 -15.28898 -15.01601 -14.77692 -14.59620 -14.12121 -13.90688 -13.82646 -13.71900 -13.55713 -13.27455 -13.16705 -13.14575 -13.02608 -12.92975 -12.77588 -12.61111 -12.46591 -12.16855 -11.99737 -11.89391 -11.51840 -11.36625 -11.16951 -11.09532 -10.95848 -10.79437 -10.69006 -10.05134 -9.36534 -8.87485 -8.06447 -5.41431 -0.12655 0.91830 1.22294 1.29600 1.35478 1.38578 1.42461 2.01999 2.42900 2.65515 3.18140 3.23821 3.40900 3.53809 3.57379 3.71805 3.74347 3.87862 3.91721 3.93345 4.03832 4.04533 4.11712 4.17739 4.19002 4.35722 4.50374 4.61159 4.67140 4.72581 4.76194 4.82976 4.88512 4.90227 4.93106 5.04210 5.09112 5.14451 5.15486 5.19977 5.23665 5.39890 5.46451 5.52971 5.60110 5.66208 5.75328 6.02802 6.17101 6.26592 6.90733 6.96108 7.01763 7.75321 7.93923 9.14887 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.003679 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.367332 B = 7609.470225 C = 9064.846114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.253 4.253 3 C 0.002 3.998 4 C -0.221 4.221 5 C 0.124 3.876 6 N -0.480 5.480 7 C 0.064 3.936 8 C 0.506 3.494 9 O -0.565 6.565 10 N -0.696 5.696 11 C 0.142 3.858 12 H 0.101 0.899 13 C -0.185 4.185 14 C 0.179 3.821 15 H 0.064 0.936 16 N -0.723 5.723 17 C -0.233 4.233 18 H 0.057 0.943 19 C -0.062 4.062 20 N -0.982 5.982 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.301 1.301 24 H -0.249 1.249 25 C -0.118 4.118 26 C -0.094 4.094 27 C -0.129 4.129 28 C -0.128 4.128 29 C 0.496 3.504 30 O -0.609 6.609 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.171 0.829 35 H 0.189 0.811 36 H 0.201 0.799 37 H 0.111 0.889 38 H 0.176 0.824 39 H 0.401 0.599 40 H 0.103 0.897 41 H 0.038 0.962 42 H 0.362 0.638 43 H 0.258 0.742 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.054 0.946 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 27.676 2.352 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.257 4.257 3 C -0.020 4.020 4 C -0.243 4.243 5 C -0.001 4.001 6 N -0.188 5.188 7 C -0.061 4.061 8 C 0.291 3.709 9 O -0.444 6.444 10 N -0.347 5.347 11 C 0.036 3.964 12 H 0.119 0.881 13 C -0.226 4.226 14 C 0.070 3.930 15 H 0.082 0.918 16 N -0.365 5.365 17 C -0.364 4.364 18 H 0.075 0.925 19 C -0.253 4.253 20 N -0.632 5.632 21 Si 0.772 3.228 22 H -0.189 1.189 23 H -0.228 1.228 24 H -0.173 1.173 25 C -0.120 4.120 26 C -0.132 4.132 27 C -0.166 4.166 28 C -0.165 4.165 29 C 0.300 3.700 30 O -0.496 6.496 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.188 0.812 35 H 0.206 0.794 36 H 0.218 0.782 37 H 0.129 0.871 38 H 0.193 0.807 39 H 0.238 0.762 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.197 0.803 43 H 0.067 0.933 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.072 0.928 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.277 27.217 3.001 28.092 hybrid contribution -0.533 -0.939 -1.305 1.694 sum 5.745 26.278 1.696 26.952 Atomic orbital electron populations 1.20375 0.88955 1.03464 1.01110 1.20908 0.98427 0.92022 1.14322 1.21836 0.94793 0.97966 0.87401 1.21188 0.94319 0.98365 1.10449 1.22747 1.00392 0.83777 0.93194 1.45052 1.07452 1.07613 1.58696 1.21990 1.01628 0.87610 0.94898 1.21021 0.77019 0.80989 0.91825 1.90691 1.51428 1.55390 1.46889 1.45719 1.57057 1.22792 1.09150 1.21695 0.96200 0.95743 0.82713 0.88079 1.24237 0.98565 0.98229 1.01591 1.21029 0.93091 0.94144 0.84780 0.91764 1.42305 1.83366 1.08562 1.02238 1.19015 1.37774 0.87301 0.92302 0.92501 1.25505 1.02123 0.98286 0.99422 1.69882 1.56224 1.19648 1.17421 0.85577 0.78423 0.79830 0.78956 1.18934 1.22770 1.17341 1.23412 0.92376 0.95139 1.01096 1.22571 0.93500 1.02907 0.94247 1.22714 0.97810 1.00578 0.95526 1.22667 0.94725 1.01577 0.97560 1.17617 0.81488 0.91644 0.79213 1.90931 1.67821 1.34831 1.56065 0.88071 0.92834 0.93742 0.81178 0.79418 0.78241 0.87094 0.80703 0.76197 0.87877 0.94321 0.80320 0.93334 0.87709 0.90633 0.91379 0.89364 0.92751 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 9.64 71.23 0.69 -1.18 16 2 C -0.25 -6.30 5.90 -19.73 -0.12 -6.42 16 3 C 0.00 0.02 9.72 22.32 0.22 0.24 16 4 C -0.22 -2.51 10.01 22.08 0.22 -2.29 16 5 C 0.12 1.81 10.28 83.42 0.86 2.67 16 6 N -0.48 -11.87 2.07 -655.05 -1.36 -13.23 16 7 C 0.06 1.55 5.82 85.63 0.50 2.05 16 8 C 0.51 15.40 7.90 87.66 0.69 16.09 16 9 O -0.57 -20.77 16.03 -3.02 -0.05 -20.82 16 10 N -0.70 -20.86 4.93 -441.16 -2.18 -23.04 16 11 C 0.14 4.24 4.12 45.28 0.19 4.42 16 12 H 0.10 2.97 7.46 -2.38 -0.02 2.95 16 13 C -0.18 -6.46 7.68 31.23 0.24 -6.22 16 14 C 0.18 6.58 4.36 45.28 0.20 6.77 16 15 H 0.06 2.48 8.10 -2.39 -0.02 2.46 16 16 N -0.72 -31.97 4.54 -321.56 -1.46 -33.43 16 17 C -0.23 -13.03 10.45 84.03 0.88 -12.15 16 18 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 19 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 20 N -0.98 -62.73 13.97 21.65 0.30 -62.42 16 21 Si 0.95 43.30 27.73 68.60 1.90 45.20 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.25 -9.73 6.38 99.48 0.63 -9.09 16 25 C -0.12 -3.20 0.78 -52.31 -0.04 -3.24 16 26 C -0.09 -1.94 7.84 30.89 0.24 -1.70 16 27 C -0.13 -2.72 8.08 31.23 0.25 -2.47 16 28 C -0.13 -3.08 7.27 30.88 0.22 -2.85 16 29 C 0.50 16.19 7.39 84.82 0.63 16.82 16 30 O -0.61 -26.27 16.08 -5.51 -0.09 -26.36 16 31 H 0.10 1.43 7.89 -2.39 -0.02 1.42 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.17 1.21 7.95 -2.91 -0.02 1.19 16 35 H 0.19 0.54 8.06 -2.91 -0.02 0.51 16 36 H 0.20 1.12 8.04 -2.91 -0.02 1.09 16 37 H 0.11 3.24 7.38 -2.39 -0.02 3.22 16 38 H 0.18 2.17 8.01 -2.39 -0.02 2.15 16 39 H 0.40 12.01 6.00 -92.70 -0.56 11.45 16 40 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 41 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.36 14.84 3.00 -92.71 -0.28 14.56 16 43 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 48 H 0.05 1.56 7.58 -2.39 -0.02 1.54 16 49 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -87.20 397.83 3.47 -83.74 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: 0.06 Total: 42.92 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 6.33 Total: 7.44 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -4.69 Total: -132.12 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.14 Total: -47.18 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.90 Total: 45.20 kcal Total: -87.20 3.47 -83.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078625515.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.673 kcal (2) G-P(sol) polarization free energy of solvation -87.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds