Wall clock time and date at job start Wed Apr 1 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36404 * 120.35160 * 2 1 4 4 C 1.40193 * 119.27031 * 180.02562 * 3 2 1 5 5 C 1.35351 * 119.94598 * 0.02562 * 4 3 2 6 6 N 1.35764 * 120.69947 * 359.97438 * 5 4 3 7 7 C 1.46505 * 119.61995 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47064 * 90.00198 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.88577 * 26.83366 * 11 10 8 13 13 C 1.53947 * 113.66337 * 255.49131 * 11 10 8 14 14 C 1.53948 * 87.29577 * 270.26545 * 13 11 10 15 15 H 1.08998 * 113.66553 * 89.73747 * 14 13 11 16 16 N 1.46507 * 113.66021 * 220.79301 * 14 13 11 17 17 C 1.36932 * 119.99813 * 255.49465 * 16 14 13 18 18 H 1.08006 * 120.00248 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00022 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99712 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47044 * 60.00026 * 21 19 17 23 23 H 1.48496 * 109.47315 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47424 * 300.00348 * 21 19 17 25 25 C 1.52907 * 113.66322 * 158.30495 * 11 10 8 26 26 C 1.52911 * 121.14098 * 323.84897 * 25 11 10 27 27 C 1.53950 * 86.78008 * 209.37517 * 26 25 11 28 28 C 1.52915 * 121.13827 * 215.28593 * 25 11 10 29 29 C 1.34656 * 120.75613 * 0.29634 * 6 5 4 30 30 O 1.22061 * 119.98888 * 179.70197 * 29 6 5 31 31 H 1.09000 * 109.47159 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47233 * 120.00015 * 1 2 3 33 33 H 1.09002 * 109.46730 * 240.00106 * 1 2 3 34 34 H 1.08008 * 120.36445 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.02804 * 180.02562 * 4 3 2 36 36 H 1.07993 * 119.64776 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47068 * 210.00166 * 7 6 5 38 38 H 1.09001 * 109.47372 * 330.00254 * 7 6 5 39 39 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.09010 * 113.58051 * 24.86363 * 13 11 10 41 41 H 1.09002 * 113.58467 * 155.65450 * 13 11 10 42 42 H 0.96994 * 119.99857 * 75.48996 * 16 14 13 43 43 H 0.97001 * 119.99994 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.65955 * 323.84927 * 26 25 11 45 45 H 1.08996 * 113.65751 * 94.90757 * 26 25 11 46 46 H 1.09000 * 113.58362 * 270.12808 * 27 26 25 47 47 H 1.09008 * 113.64648 * 139.34745 * 27 26 25 48 48 H 1.09004 * 113.66052 * 265.10244 * 28 25 11 49 49 H 1.08997 * 113.66074 * 36.05994 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2513 -0.0347 -0.0016 6 7 3.5635 -1.2053 -0.0016 7 6 4.2948 -2.4748 -0.0022 8 6 4.5461 -2.9104 1.4185 9 8 4.1534 -2.2275 2.3406 10 7 5.2080 -4.0584 1.6643 11 6 5.4518 -4.4821 3.0453 12 1 4.7076 -4.0996 3.7437 13 6 6.9035 -4.2673 3.5104 14 6 7.2042 -5.6828 2.9851 15 1 7.5154 -5.7050 1.9407 16 7 8.0855 -6.4599 3.8603 17 6 9.3977 -6.6486 3.5175 18 1 9.7830 -6.2250 2.6018 19 6 10.2326 -7.3852 4.3465 20 7 9.7630 -7.9019 5.4623 21 14 12.0225 -7.6433 3.8786 22 1 12.6995 -6.3264 3.7663 23 1 12.6944 -8.4585 4.9222 24 1 12.0964 -8.3506 2.5749 25 6 5.7184 -5.9809 3.1893 26 6 4.9892 -7.0015 2.3148 27 6 5.1401 -7.9858 3.4888 28 6 5.2285 -6.7572 4.4123 29 6 2.2170 -1.2128 -0.0066 30 8 1.6129 -2.2734 -0.0120 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 -0.3633 -0.5138 0.8900 34 1 1.6679 2.1191 -0.0004 35 1 4.1559 2.0753 -0.0001 36 1 5.3311 -0.0495 -0.0024 37 1 3.7048 -3.2337 -0.5160 38 1 5.2472 -2.3453 -0.5163 39 1 5.5224 -4.6044 0.9267 40 1 7.4242 -3.4801 2.9650 41 1 7.0056 -4.1725 4.5915 42 1 7.7394 -6.8405 4.6826 43 1 10.3463 -8.4170 6.0414 44 1 3.9551 -6.7330 2.0990 45 1 5.5472 -7.2930 1.4250 46 1 6.0590 -8.5708 3.4521 47 1 4.2553 -8.5986 3.6621 48 1 5.9777 -6.8536 5.1982 49 1 4.2624 -6.4191 4.7869 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078625517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:07 Heat of formation + Delta-G solvation = 24.467127 kcal Electronic energy + Delta-G solvation = -30357.704109 eV Core-core repulsion = 26287.229781 eV Total energy + Delta-G solvation = -4070.474327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.75315 -40.60146 -38.92355 -37.07893 -35.44486 -35.00587 -34.11032 -32.43194 -31.45401 -30.03770 -28.52349 -27.41192 -25.48620 -24.77050 -24.16777 -23.44724 -22.70332 -22.12831 -20.98328 -20.07638 -18.20998 -17.73931 -17.68404 -17.52425 -16.92272 -16.42213 -15.84540 -15.57894 -15.26586 -15.02487 -14.79231 -14.68603 -14.24726 -14.05158 -13.81859 -13.49309 -13.10456 -13.02828 -12.71318 -12.57916 -12.52609 -12.34128 -12.14152 -12.02396 -11.81200 -11.78117 -11.72372 -11.38107 -10.91362 -10.85861 -10.65927 -10.51180 -10.23491 -10.18277 -10.12165 -9.88551 -9.81538 -9.64313 -9.43314 -8.88657 -8.78280 -8.07816 -7.01491 -5.83552 -3.12386 0.58110 1.68634 2.20320 2.46011 3.05122 3.38799 3.43666 3.44785 3.49172 4.25248 4.30748 4.49559 4.53372 4.57252 4.74994 4.75238 4.87066 4.93822 4.97958 4.99509 5.06349 5.19861 5.26019 5.34548 5.40209 5.51570 5.56761 5.65871 5.78857 5.82574 5.91193 5.94341 5.99663 6.02823 6.08109 6.10130 6.12745 6.26482 6.28603 6.37430 6.42924 6.53962 6.58765 6.81135 6.84992 6.89811 7.00690 7.44990 7.62859 7.82876 8.11537 8.35070 9.46554 10.03727 10.38496 11.38539 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.002325 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.823492 B =12040.022833 C =12966.393915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.210 4.210 3 C -0.023 4.023 4 C -0.228 4.228 5 C 0.137 3.863 6 N -0.478 5.478 7 C 0.069 3.931 8 C 0.502 3.498 9 O -0.530 6.530 10 N -0.697 5.697 11 C 0.130 3.870 12 H 0.094 0.906 13 C -0.173 4.173 14 C 0.192 3.808 15 H 0.074 0.926 16 N -0.708 5.708 17 C -0.245 4.245 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.110 4.110 29 C 0.523 3.477 30 O -0.547 6.547 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.402 0.598 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.880 15.341 -13.719 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.214 4.214 3 C -0.044 4.044 4 C -0.251 4.251 5 C 0.010 3.990 6 N -0.188 5.188 7 C -0.056 4.056 8 C 0.286 3.714 9 O -0.405 6.405 10 N -0.347 5.347 11 C 0.025 3.975 12 H 0.112 0.888 13 C -0.215 4.215 14 C 0.080 3.920 15 H 0.092 0.908 16 N -0.347 5.347 17 C -0.376 4.376 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.122 4.122 26 C -0.164 4.164 27 C -0.168 4.168 28 C -0.148 4.148 29 C 0.325 3.675 30 O -0.429 6.429 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.236 0.764 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.223 0.777 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.332 15.056 -13.096 24.568 hybrid contribution 1.303 -0.395 -0.174 1.373 sum -13.028 14.660 -13.271 23.680 Atomic orbital electron populations 1.20397 0.89097 1.01938 1.02836 1.20778 0.97848 0.91934 1.10816 1.21345 0.93922 0.97965 0.91190 1.20596 0.94638 0.97222 1.12685 1.21909 0.98455 0.84755 0.93881 1.44978 1.07972 1.06450 1.59416 1.21823 0.99553 0.87550 0.96701 1.20570 0.78214 0.81756 0.90889 1.90749 1.50509 1.53677 1.45606 1.45501 1.57091 1.23006 1.09118 1.21746 0.98349 0.95373 0.82076 0.88840 1.24273 0.94086 1.01278 1.01872 1.21273 0.86484 0.89616 0.94652 0.90784 1.42393 1.07295 1.60797 1.24236 1.19207 0.86328 1.27424 1.04658 0.91271 1.24750 0.98294 1.00563 0.97098 1.69642 1.35355 1.39684 1.13141 0.86279 0.85025 0.77636 0.77280 1.21280 1.21691 1.21278 1.23537 0.98848 0.91156 0.98627 1.22657 0.99526 0.96895 0.97347 1.22740 1.01991 0.96102 0.96009 1.22462 1.00593 0.95493 0.96281 1.16922 0.80364 0.91218 0.79004 1.90944 1.66452 1.32783 1.52720 0.91617 0.91395 0.91306 0.84917 0.83699 0.82214 0.85224 0.85949 0.76397 0.92392 0.89551 0.77652 0.93357 0.90834 0.91660 0.89168 0.92401 0.90226 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 9.64 36.00 0.35 -0.45 16 2 C -0.21 -2.30 5.90 -104.42 -0.62 -2.92 16 3 C -0.02 -0.18 9.72 -39.51 -0.38 -0.57 16 4 C -0.23 -1.64 10.01 -39.88 -0.40 -2.04 16 5 C 0.14 1.09 10.28 -16.84 -0.17 0.92 16 6 N -0.48 -5.16 2.07 -121.06 -0.25 -5.41 16 7 C 0.07 0.64 5.82 -5.19 -0.03 0.61 16 8 C 0.50 6.56 7.90 -10.98 -0.09 6.48 16 9 O -0.53 -9.27 16.07 5.56 0.09 -9.18 16 10 N -0.70 -8.54 5.07 -53.38 -0.27 -8.81 16 11 C 0.13 1.96 4.08 -67.49 -0.28 1.69 16 12 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 13 C -0.17 -2.97 7.68 -25.75 -0.20 -3.17 16 14 C 0.19 3.53 4.28 -67.48 -0.29 3.24 16 15 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 16 N -0.71 -16.66 5.35 -52.99 -0.28 -16.94 16 17 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 18 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 21 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 C -0.12 -1.86 0.91 -154.71 -0.14 -2.00 16 26 C -0.13 -1.77 7.43 -26.28 -0.20 -1.96 16 27 C -0.13 -2.01 8.08 -25.75 -0.21 -2.22 16 28 C -0.11 -1.77 7.45 -26.28 -0.20 -1.96 16 29 C 0.52 7.07 7.39 -15.45 -0.11 6.96 16 30 O -0.55 -9.18 16.08 4.86 0.08 -9.10 16 31 H 0.06 0.43 7.89 -51.93 -0.41 0.02 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.13 0.69 7.95 -52.48 -0.42 0.28 16 35 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.16 0.77 8.04 -52.49 -0.42 0.35 16 37 H 0.13 1.17 7.38 -51.93 -0.38 0.78 16 38 H 0.12 0.60 8.01 -51.93 -0.42 0.19 16 39 H 0.40 3.90 8.54 -40.82 -0.35 3.56 16 40 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 41 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.39 9.72 5.86 -40.82 -0.24 9.48 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 47 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 48 H 0.08 1.46 6.42 -51.93 -0.33 1.12 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -35.45 403.86 -9.61 -45.06 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -7.56 Total: 12.48 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.20 Total: -4.41 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.08 Total: -57.64 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.17 Total: -18.29 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.45 -9.61 -45.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078625517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.523 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds