Wall clock time and date at job start Wed Apr 1 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36404 * 120.35160 * 2 1 4 4 C 1.40193 * 119.27031 * 180.02562 * 3 2 1 5 5 C 1.35351 * 119.94598 * 0.02562 * 4 3 2 6 6 N 1.35764 * 120.69947 * 359.97438 * 5 4 3 7 7 C 1.46505 * 119.61995 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47064 * 90.00198 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.88577 * 26.83366 * 11 10 8 13 13 C 1.53947 * 113.66337 * 255.49131 * 11 10 8 14 14 C 1.53948 * 87.29577 * 270.26545 * 13 11 10 15 15 H 1.08998 * 113.66553 * 89.73747 * 14 13 11 16 16 N 1.46507 * 113.66021 * 220.79301 * 14 13 11 17 17 C 1.36932 * 119.99813 * 255.49465 * 16 14 13 18 18 H 1.08006 * 120.00248 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00022 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99712 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47044 * 60.00026 * 21 19 17 23 23 H 1.48496 * 109.47315 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47424 * 300.00348 * 21 19 17 25 25 C 1.52907 * 113.66322 * 158.30495 * 11 10 8 26 26 C 1.52911 * 121.14098 * 323.84897 * 25 11 10 27 27 C 1.53950 * 86.78008 * 209.37517 * 26 25 11 28 28 C 1.52915 * 121.13827 * 215.28593 * 25 11 10 29 29 C 1.34656 * 120.75613 * 0.29634 * 6 5 4 30 30 O 1.22061 * 119.98888 * 179.70197 * 29 6 5 31 31 H 1.09000 * 109.47159 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47233 * 120.00015 * 1 2 3 33 33 H 1.09002 * 109.46730 * 240.00106 * 1 2 3 34 34 H 1.08008 * 120.36445 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.02804 * 180.02562 * 4 3 2 36 36 H 1.07993 * 119.64776 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47068 * 210.00166 * 7 6 5 38 38 H 1.09001 * 109.47372 * 330.00254 * 7 6 5 39 39 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.09010 * 113.58051 * 24.86363 * 13 11 10 41 41 H 1.09002 * 113.58467 * 155.65450 * 13 11 10 42 42 H 0.96994 * 119.99857 * 75.48996 * 16 14 13 43 43 H 0.97001 * 119.99994 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.65955 * 323.84927 * 26 25 11 45 45 H 1.08996 * 113.65751 * 94.90757 * 26 25 11 46 46 H 1.09000 * 113.58362 * 270.12808 * 27 26 25 47 47 H 1.09008 * 113.64648 * 139.34745 * 27 26 25 48 48 H 1.09004 * 113.66052 * 265.10244 * 28 25 11 49 49 H 1.08997 * 113.66074 * 36.05994 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2513 -0.0347 -0.0016 6 7 3.5635 -1.2053 -0.0016 7 6 4.2948 -2.4748 -0.0022 8 6 4.5461 -2.9104 1.4185 9 8 4.1534 -2.2275 2.3406 10 7 5.2080 -4.0584 1.6643 11 6 5.4518 -4.4821 3.0453 12 1 4.7076 -4.0996 3.7437 13 6 6.9035 -4.2673 3.5104 14 6 7.2042 -5.6828 2.9851 15 1 7.5154 -5.7050 1.9407 16 7 8.0855 -6.4599 3.8603 17 6 9.3977 -6.6486 3.5175 18 1 9.7830 -6.2250 2.6018 19 6 10.2326 -7.3852 4.3465 20 7 9.7630 -7.9019 5.4623 21 14 12.0225 -7.6433 3.8786 22 1 12.6995 -6.3264 3.7663 23 1 12.6944 -8.4585 4.9222 24 1 12.0964 -8.3506 2.5749 25 6 5.7184 -5.9809 3.1893 26 6 4.9892 -7.0015 2.3148 27 6 5.1401 -7.9858 3.4888 28 6 5.2285 -6.7572 4.4123 29 6 2.2170 -1.2128 -0.0066 30 8 1.6129 -2.2734 -0.0120 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 -0.3633 -0.5138 0.8900 34 1 1.6679 2.1191 -0.0004 35 1 4.1559 2.0753 -0.0001 36 1 5.3311 -0.0495 -0.0024 37 1 3.7048 -3.2337 -0.5160 38 1 5.2472 -2.3453 -0.5163 39 1 5.5224 -4.6044 0.9267 40 1 7.4242 -3.4801 2.9650 41 1 7.0056 -4.1725 4.5915 42 1 7.7394 -6.8405 4.6826 43 1 10.3463 -8.4170 6.0414 44 1 3.9551 -6.7330 2.0990 45 1 5.5472 -7.2930 1.4250 46 1 6.0590 -8.5708 3.4521 47 1 4.2553 -8.5986 3.6621 48 1 5.9777 -6.8536 5.1982 49 1 4.2624 -6.4191 4.7869 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078625517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:05 Heat of formation + Delta-G solvation = 1.301657 kcal Electronic energy + Delta-G solvation = -30358.708639 eV Core-core repulsion = 26287.229781 eV Total energy + Delta-G solvation = -4071.478857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.56846 -41.86773 -40.04905 -37.94260 -36.44191 -36.08976 -35.77243 -33.90319 -32.25092 -31.73039 -29.43325 -28.09264 -26.75021 -26.48883 -25.53912 -24.48719 -23.53753 -23.38830 -22.10017 -21.30995 -19.64282 -19.09306 -18.53028 -18.37466 -18.18899 -17.33516 -17.03053 -16.66938 -16.47508 -16.37532 -16.14626 -15.65708 -15.45219 -15.24896 -14.91546 -14.71115 -14.21872 -14.04354 -13.84031 -13.66447 -13.45838 -13.32964 -13.22535 -13.20079 -13.07087 -12.94821 -12.86951 -12.73571 -12.52069 -12.42689 -12.19807 -11.95639 -11.86182 -11.45043 -11.31051 -11.16773 -11.03297 -10.93254 -10.69184 -10.64447 -9.99628 -8.95300 -8.82799 -7.92184 -5.19892 -0.09285 0.95925 1.43669 1.46381 1.48523 1.50622 1.56581 2.10315 2.57600 2.71101 3.38346 3.44966 3.52643 3.63461 3.69834 3.74922 3.79896 3.89444 3.98815 4.01318 4.11644 4.15154 4.23208 4.25134 4.27111 4.38712 4.55110 4.62510 4.70809 4.77319 4.79776 4.83221 4.85025 4.93434 4.99387 5.06173 5.10424 5.15953 5.19947 5.22983 5.27441 5.44345 5.49305 5.56975 5.59311 5.64164 5.68042 6.06768 6.29283 6.44563 6.97913 7.12389 7.36499 8.13632 8.36458 9.30799 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.002325 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.823492 B =12040.022833 C =12966.393915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.254 4.254 3 C -0.003 4.003 4 C -0.227 4.227 5 C 0.126 3.874 6 N -0.481 5.481 7 C 0.073 3.927 8 C 0.502 3.498 9 O -0.578 6.578 10 N -0.685 5.685 11 C 0.149 3.851 12 H 0.077 0.923 13 C -0.168 4.168 14 C 0.182 3.818 15 H 0.087 0.913 16 N -0.721 5.721 17 C -0.239 4.239 18 H 0.079 0.921 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.970 3.030 22 H -0.280 1.280 23 H -0.301 1.301 24 H -0.277 1.277 25 C -0.112 4.112 26 C -0.110 4.110 27 C -0.130 4.130 28 C -0.115 4.115 29 C 0.502 3.498 30 O -0.602 6.602 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.166 0.834 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.132 0.868 38 H 0.175 0.825 39 H 0.418 0.582 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.376 0.624 43 H 0.249 0.751 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.049 0.951 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 17.605 -16.379 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.257 4.257 3 C -0.024 4.024 4 C -0.249 4.249 5 C 0.000 4.000 6 N -0.190 5.190 7 C -0.052 4.052 8 C 0.288 3.712 9 O -0.457 6.457 10 N -0.337 5.337 11 C 0.042 3.958 12 H 0.095 0.905 13 C -0.210 4.210 14 C 0.072 3.928 15 H 0.105 0.895 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.097 0.903 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.799 3.201 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.203 1.203 25 C -0.114 4.114 26 C -0.147 4.147 27 C -0.168 4.168 28 C -0.153 4.153 29 C 0.306 3.694 30 O -0.489 6.489 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.183 0.817 35 H 0.199 0.801 36 H 0.213 0.787 37 H 0.150 0.850 38 H 0.192 0.808 39 H 0.255 0.745 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.210 0.790 43 H 0.058 0.942 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.813 17.365 -15.835 27.260 hybrid contribution 1.154 -0.951 0.651 1.631 sum -12.658 16.415 -15.184 25.695 Atomic orbital electron populations 1.20367 0.88859 1.03320 1.01312 1.20952 0.98516 0.92249 1.14029 1.21800 0.94686 0.98163 0.87796 1.21142 0.94457 0.98448 1.10823 1.22665 1.00217 0.84073 0.93007 1.45063 1.07489 1.07849 1.58589 1.22018 1.01817 0.87364 0.94036 1.21252 0.76870 0.81010 0.92087 1.90733 1.52318 1.55126 1.47489 1.45350 1.56857 1.23183 1.08264 1.21350 0.96339 0.94621 0.83495 0.90451 1.24095 0.95820 1.00492 1.00597 1.21564 0.87283 0.89596 0.94369 0.89521 1.42568 1.07224 1.61493 1.24678 1.19638 0.87504 1.25658 1.04280 0.90294 1.25526 1.02229 1.01565 0.97505 1.69810 1.36365 1.41329 1.14483 0.85265 0.80488 0.77479 0.76836 1.20582 1.22746 1.20260 1.23327 0.96904 0.91974 0.99181 1.22606 1.00343 0.94906 0.96855 1.22655 1.01439 0.96024 0.96644 1.22505 1.00536 0.96460 0.95799 1.17426 0.81408 0.91459 0.79099 1.90889 1.67675 1.34394 1.55987 0.88621 0.92363 0.93578 0.81680 0.80148 0.78652 0.85014 0.80776 0.74505 0.91722 0.91820 0.78996 0.94211 0.89010 0.90554 0.92093 0.90420 0.93223 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 9.64 71.23 0.69 -0.86 16 2 C -0.25 -5.42 5.90 -19.73 -0.12 -5.54 16 3 C 0.00 -0.04 9.72 22.32 0.22 0.18 16 4 C -0.23 -2.35 10.01 22.08 0.22 -2.13 16 5 C 0.13 1.57 10.28 83.42 0.86 2.43 16 6 N -0.48 -9.48 2.07 -655.05 -1.36 -10.84 16 7 C 0.07 1.16 5.82 85.63 0.50 1.65 16 8 C 0.50 12.24 7.90 87.66 0.69 12.94 16 9 O -0.58 -19.88 16.07 -3.02 -0.05 -19.93 16 10 N -0.69 -15.32 5.07 -441.17 -2.24 -17.56 16 11 C 0.15 4.35 4.08 45.28 0.18 4.53 16 12 H 0.08 2.60 7.54 -2.39 -0.02 2.58 16 13 C -0.17 -5.71 7.68 31.23 0.24 -5.47 16 14 C 0.18 6.56 4.28 45.28 0.19 6.75 16 15 H 0.09 2.91 8.12 -2.39 -0.02 2.89 16 16 N -0.72 -34.39 5.35 -321.55 -1.72 -36.11 16 17 C -0.24 -12.62 9.98 84.03 0.84 -11.79 16 18 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 20 N -0.97 -58.32 13.06 21.65 0.28 -58.03 16 21 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 C -0.11 -3.39 0.91 -52.31 -0.05 -3.43 16 26 C -0.11 -2.83 7.43 30.89 0.23 -2.61 16 27 C -0.13 -3.92 8.08 31.23 0.25 -3.66 16 28 C -0.11 -3.71 7.45 30.89 0.23 -3.48 16 29 C 0.50 13.56 7.39 84.82 0.63 14.19 16 30 O -0.60 -21.08 16.08 -5.51 -0.09 -21.17 16 31 H 0.10 1.11 7.89 -2.39 -0.02 1.09 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.17 1.03 7.95 -2.91 -0.02 1.01 16 35 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.20 0.90 8.04 -2.91 -0.02 0.88 16 37 H 0.13 2.14 7.38 -2.39 -0.02 2.12 16 38 H 0.17 0.88 8.01 -2.39 -0.02 0.86 16 39 H 0.42 6.78 8.54 -92.70 -0.79 5.99 16 40 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.38 19.59 5.86 -92.71 -0.54 19.05 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.05 1.91 6.42 -2.39 -0.02 1.89 16 49 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -82.31 403.86 2.77 -79.54 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.36 Total: 37.16 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 6.27 Total: -0.07 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -5.04 Total: -122.55 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.14 Total: -41.10 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -82.31 2.77 -79.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078625517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.843 kcal (2) G-P(sol) polarization free energy of solvation -82.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds