Wall clock time and date at job start Wed Apr 1 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35650 * 116.99709 * 2 1 4 4 C 1.39338 * 120.54172 * 359.97438 * 3 2 1 5 5 C 1.38304 * 118.43921 * 180.02562 * 4 3 2 6 6 C 1.50705 * 120.27641 * 180.02562 * 5 4 3 7 7 C 1.38759 * 119.44584 * 359.97438 * 5 4 3 8 8 N 1.31372 * 121.06954 * 359.74181 * 7 5 4 9 9 C 1.32865 * 121.69478 * 0.52895 * 8 7 5 10 10 C 1.47826 * 119.78608 * 179.75250 * 9 8 7 11 11 O 1.21557 * 119.99792 * 179.72496 * 10 9 8 12 12 N 1.34771 * 119.99864 * 359.72401 * 10 9 8 13 13 C 1.46507 * 120.00138 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.88064 * 336.34110 * 13 12 10 15 15 C 1.54241 * 113.75079 * 107.77207 * 13 12 10 16 16 C 1.53955 * 87.18863 * 139.21780 * 15 13 12 17 17 H 1.08997 * 113.66205 * 220.75128 * 16 15 13 18 18 N 1.46498 * 113.66415 * 89.78569 * 16 15 13 19 19 C 1.36943 * 119.99752 * 105.73736 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.52905 * 86.88352 * 335.26925 * 16 15 13 28 28 C 1.52914 * 121.14057 * 259.22722 * 27 16 15 29 29 C 1.53949 * 86.78170 * 209.38018 * 28 27 16 30 30 C 1.52911 * 121.13968 * 150.66362 * 27 16 15 31 31 H 1.09006 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47397 * 300.00340 * 1 2 3 33 33 H 1.08997 * 109.46906 * 60.00749 * 1 2 3 34 34 H 1.08006 * 120.78093 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.46751 * 89.99693 * 6 5 4 36 36 H 1.08998 * 109.46966 * 209.99853 * 6 5 4 37 37 H 1.09000 * 109.46845 * 329.99877 * 6 5 4 38 38 H 1.08005 * 119.46599 * 180.02562 * 7 5 4 39 39 H 0.97000 * 120.00377 * 0.02562 * 12 10 9 40 40 H 1.09004 * 113.58278 * 24.66765 * 15 13 12 41 41 H 1.08994 * 113.67408 * 253.78326 * 15 13 12 42 42 H 0.97001 * 120.00384 * 286.02091 * 18 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.66024 * 323.85226 * 28 27 16 45 45 H 1.08994 * 113.66194 * 94.90621 * 28 27 16 46 46 H 1.09002 * 113.57925 * 270.12615 * 29 28 27 47 47 H 1.09000 * 113.65069 * 139.35133 * 29 28 27 48 48 H 1.09005 * 113.65882 * 265.09435 * 30 27 16 49 49 H 1.08996 * 113.66010 * 36.14620 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5928 -0.0011 6 6 1.2018 4.8897 -0.0011 7 6 3.3571 3.6012 -0.0005 8 7 4.0418 2.4801 0.0056 9 6 3.4410 1.2951 0.0010 10 6 4.2531 0.0599 0.0027 11 8 3.7074 -1.0263 0.0036 12 7 5.5986 0.1381 0.0032 13 6 6.4035 -1.0860 0.0043 14 1 5.8677 -1.9453 0.4076 15 6 7.1055 -1.3691 -1.3397 16 6 8.3359 -1.7983 -0.5200 17 1 9.2821 -1.4572 -0.9400 18 7 8.3457 -3.2223 -0.1760 19 6 9.1935 -4.0782 -0.8273 20 1 9.8580 -3.7025 -1.5913 21 6 9.1988 -5.4285 -0.5055 22 7 8.3885 -5.8863 0.4253 23 14 10.3557 -6.5957 -1.3933 24 1 11.7597 -6.1678 -1.1679 25 1 10.1673 -7.9727 -0.8700 26 1 10.0593 -6.5749 -2.8483 27 6 7.8011 -0.9010 0.5966 28 6 8.3801 0.4938 0.8359 29 6 7.9995 0.3033 2.3154 30 6 8.0845 -1.2135 2.0664 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 0.2173 2.3527 -0.0014 35 1 1.0171 5.2025 1.0266 36 1 1.7824 5.6556 -0.5153 37 1 0.2507 4.7488 -0.5145 38 1 3.8827 4.5447 -0.0005 39 1 6.0341 1.0049 0.0028 40 1 7.2725 -0.4755 -1.9412 41 1 6.6536 -2.1830 -1.9065 42 1 7.7488 -3.5598 0.5101 43 1 8.3924 -6.8298 0.6505 44 1 9.4548 0.5565 0.6652 45 1 7.8239 1.2893 0.3401 46 1 6.9944 0.6501 2.5553 47 1 8.7519 0.6737 3.0117 48 1 7.2922 -1.7820 2.5535 49 1 9.0762 -1.6307 2.2415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078648427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:02 Heat of formation + Delta-G solvation = 22.878049 kcal Electronic energy + Delta-G solvation = -30561.059433 eV Core-core repulsion = 26490.516198 eV Total energy + Delta-G solvation = -4070.543235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.20467 -40.35354 -38.53030 -38.33012 -34.96152 -34.20454 -33.73367 -32.20306 -31.25172 -29.57304 -28.45095 -27.51181 -25.43248 -24.67885 -24.07560 -23.67991 -23.02510 -22.25832 -20.48495 -20.01988 -18.69904 -17.77713 -17.68666 -17.18974 -16.84815 -16.23291 -15.60275 -15.49719 -15.18599 -14.78002 -14.65701 -14.36725 -14.19050 -14.05904 -13.95185 -13.71799 -13.12201 -12.99764 -12.94527 -12.58107 -12.55956 -12.35120 -11.98311 -11.79671 -11.74747 -11.73868 -11.59365 -11.39570 -10.85955 -10.77084 -10.53964 -10.23713 -10.17527 -9.97418 -9.87772 -9.80436 -9.66179 -9.48515 -9.27627 -8.75677 -8.71827 -8.41395 -6.89901 -5.71455 -3.00472 0.41726 0.92756 2.79351 2.88799 3.32941 3.48272 3.52508 3.53639 3.73149 4.04561 4.18215 4.41154 4.53872 4.59172 4.62189 4.74090 4.83325 4.85336 4.98917 5.06831 5.07400 5.08036 5.12179 5.24814 5.26937 5.43252 5.46367 5.54242 5.57412 5.72382 5.74949 5.90812 6.01135 6.04486 6.10821 6.14055 6.17102 6.21326 6.38242 6.50907 6.59201 6.76674 6.81715 6.88381 6.92965 6.96097 7.19847 7.46428 7.75874 7.91734 8.47046 8.52808 9.57782 10.15758 10.50408 11.50671 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.002606 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.325465 B =10742.562900 C =11782.834985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.269 6.269 3 C 0.142 3.858 4 C -0.181 4.181 5 C -0.077 4.077 6 C -0.114 4.114 7 C 0.056 3.944 8 N -0.416 5.416 9 C 0.041 3.959 10 C 0.566 3.434 11 O -0.515 6.515 12 N -0.698 5.698 13 C 0.152 3.848 14 H 0.115 0.885 15 C -0.182 4.182 16 C 0.186 3.814 17 H 0.067 0.933 18 N -0.701 5.701 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C -0.126 4.126 28 C -0.110 4.110 29 C -0.141 4.141 30 C -0.114 4.114 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.163 0.837 39 H 0.404 0.596 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.530 24.524 1.205 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.091 3.909 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.171 4.171 7 C -0.105 4.105 8 N -0.127 5.127 9 C -0.098 4.098 10 C 0.350 3.650 11 O -0.389 6.389 12 N -0.349 5.349 13 C 0.048 3.952 14 H 0.133 0.867 15 C -0.225 4.225 16 C 0.073 3.927 17 H 0.085 0.915 18 N -0.339 5.339 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.129 4.129 28 C -0.148 4.148 29 C -0.178 4.178 30 C -0.151 4.151 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.181 0.819 39 H 0.241 0.759 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.789 23.319 1.128 27.636 hybrid contribution -0.758 -0.150 -0.301 0.829 sum -15.546 23.168 0.827 27.913 Atomic orbital electron populations 1.23229 0.78574 1.04836 1.01028 1.86470 1.20867 1.24354 1.86142 1.20076 0.92352 0.85702 0.92795 1.21614 1.00890 0.91265 1.06917 1.20978 0.95270 0.95722 0.95950 1.20812 0.99891 0.93367 1.03072 1.22585 0.90563 0.96422 1.00974 1.67613 1.39740 0.97352 1.07989 1.20834 0.88685 0.92981 1.07298 1.17627 0.82645 0.87062 0.77663 1.90862 1.71665 1.27433 1.48934 1.45911 1.05143 1.10561 1.73311 1.22369 0.88218 0.86947 0.97647 0.86683 1.24358 1.00825 1.00821 0.96462 1.20788 0.94731 0.85448 0.91751 0.91540 1.42090 1.46125 1.00699 1.44967 1.19214 1.14016 0.88904 1.15111 0.91100 1.24754 0.99767 0.97027 0.99240 1.69663 1.40388 1.14054 1.33684 0.86262 0.80466 0.80317 0.79079 1.21288 1.21758 1.21284 1.23465 0.95811 0.97131 0.96476 1.22508 1.00726 0.95275 0.96261 1.22857 1.00881 0.97813 0.96278 1.22547 1.02466 0.94926 0.95175 0.87487 0.92573 0.92563 0.83744 0.90255 0.90518 0.91067 0.81937 0.75888 0.91265 0.90900 0.77903 0.93424 0.89678 0.92076 0.90901 0.92067 0.91824 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 101.05 0.99 1.14 16 2 O -0.27 -3.69 8.56 -40.60 -0.35 -4.04 16 3 C 0.14 1.82 6.71 -38.56 -0.26 1.56 16 4 C -0.18 -1.61 8.80 -39.15 -0.34 -1.95 16 5 C -0.08 -0.59 5.90 -104.40 -0.62 -1.20 16 6 C -0.11 -0.46 10.03 36.01 0.36 -0.10 16 7 C 0.06 0.50 10.85 -17.56 -0.19 0.31 16 8 N -0.42 -5.10 9.54 -9.71 -0.09 -5.19 16 9 C 0.04 0.60 6.76 -82.88 -0.56 0.03 16 10 C 0.57 9.91 7.80 -12.34 -0.10 9.81 16 11 O -0.51 -10.84 14.74 -16.64 -0.25 -11.08 16 12 N -0.70 -11.19 5.27 -54.16 -0.29 -11.47 16 13 C 0.15 2.77 4.05 -67.32 -0.27 2.50 16 14 H 0.12 2.48 7.46 -51.93 -0.39 2.09 16 15 C -0.18 -3.47 7.71 -25.59 -0.20 -3.66 16 16 C 0.19 3.79 4.35 -67.48 -0.29 3.50 16 17 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 18 N -0.70 -17.79 5.11 -52.99 -0.27 -18.06 16 19 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 23 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 C -0.13 -2.15 0.91 -154.71 -0.14 -2.29 16 28 C -0.11 -1.51 7.47 -26.28 -0.20 -1.70 16 29 C -0.14 -1.93 8.08 -25.75 -0.21 -2.14 16 30 C -0.11 -1.93 7.46 -26.28 -0.20 -2.12 16 31 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 33 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 34 H 0.14 0.86 6.46 -52.48 -0.34 0.52 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 37 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 38 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.40 5.70 6.05 -40.82 -0.25 5.45 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.39 10.54 7.78 -40.82 -0.32 10.23 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.75 6.42 -51.93 -0.33 0.42 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -34.44 400.66 -9.42 -43.86 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -7.46 Total: 13.72 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.46 Total: -3.66 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.08 Total: -62.54 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.59 Total: -15.12 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.44 -9.42 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078648427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.741 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds