Wall clock time and date at job start Wed Apr 1 2020 05:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35650 * 116.99709 * 2 1 4 4 C 1.39338 * 120.54172 * 359.97438 * 3 2 1 5 5 C 1.38304 * 118.43921 * 180.02562 * 4 3 2 6 6 C 1.50705 * 120.27641 * 180.02562 * 5 4 3 7 7 C 1.38759 * 119.44584 * 359.97438 * 5 4 3 8 8 N 1.31372 * 121.06954 * 359.74181 * 7 5 4 9 9 C 1.32865 * 121.69478 * 0.52895 * 8 7 5 10 10 C 1.47826 * 119.78608 * 179.75250 * 9 8 7 11 11 O 1.21557 * 119.99792 * 179.72496 * 10 9 8 12 12 N 1.34771 * 119.99864 * 359.72401 * 10 9 8 13 13 C 1.46507 * 120.00138 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.88064 * 336.34110 * 13 12 10 15 15 C 1.54241 * 113.75079 * 107.77207 * 13 12 10 16 16 C 1.53955 * 87.18863 * 139.21780 * 15 13 12 17 17 H 1.08997 * 113.66205 * 220.75128 * 16 15 13 18 18 N 1.46498 * 113.66415 * 89.78569 * 16 15 13 19 19 C 1.36943 * 119.99752 * 105.73736 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.52905 * 86.88352 * 335.26925 * 16 15 13 28 28 C 1.52914 * 121.14057 * 259.22722 * 27 16 15 29 29 C 1.53949 * 86.78170 * 209.38018 * 28 27 16 30 30 C 1.52911 * 121.13968 * 150.66362 * 27 16 15 31 31 H 1.09006 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47397 * 300.00340 * 1 2 3 33 33 H 1.08997 * 109.46906 * 60.00749 * 1 2 3 34 34 H 1.08006 * 120.78093 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.46751 * 89.99693 * 6 5 4 36 36 H 1.08998 * 109.46966 * 209.99853 * 6 5 4 37 37 H 1.09000 * 109.46845 * 329.99877 * 6 5 4 38 38 H 1.08005 * 119.46599 * 180.02562 * 7 5 4 39 39 H 0.97000 * 120.00377 * 0.02562 * 12 10 9 40 40 H 1.09004 * 113.58278 * 24.66765 * 15 13 12 41 41 H 1.08994 * 113.67408 * 253.78326 * 15 13 12 42 42 H 0.97001 * 120.00384 * 286.02091 * 18 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.66024 * 323.85226 * 28 27 16 45 45 H 1.08994 * 113.66194 * 94.90621 * 28 27 16 46 46 H 1.09002 * 113.57925 * 270.12615 * 29 28 27 47 47 H 1.09000 * 113.65069 * 139.35133 * 29 28 27 48 48 H 1.09005 * 113.65882 * 265.09435 * 30 27 16 49 49 H 1.08996 * 113.66010 * 36.14620 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5928 -0.0011 6 6 1.2018 4.8897 -0.0011 7 6 3.3571 3.6012 -0.0005 8 7 4.0418 2.4801 0.0056 9 6 3.4410 1.2951 0.0010 10 6 4.2531 0.0599 0.0027 11 8 3.7074 -1.0263 0.0036 12 7 5.5986 0.1381 0.0032 13 6 6.4035 -1.0860 0.0043 14 1 5.8677 -1.9453 0.4076 15 6 7.1055 -1.3691 -1.3397 16 6 8.3359 -1.7983 -0.5200 17 1 9.2821 -1.4572 -0.9400 18 7 8.3457 -3.2223 -0.1760 19 6 9.1935 -4.0782 -0.8273 20 1 9.8580 -3.7025 -1.5913 21 6 9.1988 -5.4285 -0.5055 22 7 8.3885 -5.8863 0.4253 23 14 10.3557 -6.5957 -1.3933 24 1 11.7597 -6.1678 -1.1679 25 1 10.1673 -7.9727 -0.8700 26 1 10.0593 -6.5749 -2.8483 27 6 7.8011 -0.9010 0.5966 28 6 8.3801 0.4938 0.8359 29 6 7.9995 0.3033 2.3154 30 6 8.0845 -1.2135 2.0664 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 0.2173 2.3527 -0.0014 35 1 1.0171 5.2025 1.0266 36 1 1.7824 5.6556 -0.5153 37 1 0.2507 4.7488 -0.5145 38 1 3.8827 4.5447 -0.0005 39 1 6.0341 1.0049 0.0028 40 1 7.2725 -0.4755 -1.9412 41 1 6.6536 -2.1830 -1.9065 42 1 7.7488 -3.5598 0.5101 43 1 8.3924 -6.8298 0.6505 44 1 9.4548 0.5565 0.6652 45 1 7.8239 1.2893 0.3401 46 1 6.9944 0.6501 2.5553 47 1 8.7519 0.6737 3.0117 48 1 7.2922 -1.7820 2.5535 49 1 9.0762 -1.6307 2.2415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078648427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:58 Heat of formation + Delta-G solvation = -0.242294 kcal Electronic energy + Delta-G solvation = -30562.062006 eV Core-core repulsion = 26490.516198 eV Total energy + Delta-G solvation = -4071.545808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 23.96 seconds Orbital eigenvalues (eV) -42.19463 -41.64409 -39.69084 -39.29525 -36.56415 -35.52428 -34.82353 -33.89836 -32.04897 -31.49691 -29.09287 -28.26089 -26.76905 -26.31699 -25.42422 -24.94843 -24.21575 -23.25843 -21.73316 -21.48474 -19.92825 -19.31736 -18.62657 -18.52251 -18.04515 -17.11223 -17.02334 -16.79527 -16.54531 -16.23845 -15.76064 -15.73059 -15.26979 -15.04243 -14.85195 -14.76193 -14.56102 -14.28896 -13.94375 -13.59904 -13.56818 -13.31808 -13.29788 -13.11717 -12.99902 -12.95836 -12.75734 -12.55904 -12.42969 -12.40370 -12.21333 -11.99527 -11.78195 -11.37420 -11.33961 -11.10260 -10.96589 -10.65694 -10.60654 -10.53010 -9.94985 -9.45941 -8.98741 -7.93454 -5.22847 -0.41552 0.19740 1.46360 1.50444 1.56227 1.71826 2.08257 2.19074 2.55646 2.76845 3.17940 3.37236 3.41375 3.49726 3.53541 3.69282 3.78613 3.90312 3.91964 4.03563 4.05349 4.19371 4.20049 4.20950 4.30334 4.30522 4.55028 4.60143 4.61814 4.70304 4.75628 4.81115 4.86884 4.90745 4.96013 5.01434 5.09422 5.11106 5.15741 5.19794 5.21708 5.28658 5.41196 5.47823 5.52875 5.57461 5.72523 6.18945 6.27821 6.48368 6.80965 7.25273 7.32910 8.09287 8.32490 9.29878 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.002606 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.325465 B =10742.562900 C =11782.834985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.312 6.312 3 C 0.127 3.873 4 C -0.177 4.177 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.055 3.945 8 N -0.429 5.429 9 C -0.003 4.003 10 C 0.560 3.440 11 O -0.567 6.567 12 N -0.685 5.685 13 C 0.159 3.841 14 H 0.070 0.930 15 C -0.172 4.172 16 C 0.171 3.829 17 H 0.076 0.924 18 N -0.715 5.715 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.078 4.078 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.273 1.273 25 H -0.298 1.298 26 H -0.280 1.280 27 C -0.117 4.117 28 C -0.094 4.094 29 C -0.122 4.122 30 C -0.125 4.125 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.176 0.824 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.199 0.801 39 H 0.416 0.584 40 H 0.099 0.901 41 H 0.038 0.962 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 29.380 0.681 33.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.222 6.222 3 C 0.076 3.924 4 C -0.203 4.203 5 C -0.060 4.060 6 C -0.170 4.170 7 C -0.108 4.108 8 N -0.140 5.140 9 C -0.139 4.139 10 C 0.347 3.653 11 O -0.445 6.445 12 N -0.336 5.336 13 C 0.053 3.947 14 H 0.089 0.911 15 C -0.214 4.214 16 C 0.060 3.940 17 H 0.094 0.906 18 N -0.352 5.352 19 C -0.372 4.372 20 H 0.099 0.901 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.805 3.195 24 H -0.199 1.199 25 H -0.224 1.224 26 H -0.206 1.206 27 C -0.119 4.119 28 C -0.131 4.131 29 C -0.160 4.160 30 C -0.163 4.163 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.193 0.807 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.216 0.784 39 H 0.256 0.744 40 H 0.118 0.882 41 H 0.057 0.943 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.085 28.245 0.579 32.026 hybrid contribution -0.805 -1.476 -0.151 1.688 sum -15.890 26.769 0.428 31.133 Atomic orbital electron populations 1.23509 0.76198 1.05714 1.03030 1.86411 1.23612 1.25770 1.86430 1.20310 0.92174 0.86702 0.93188 1.21982 1.02281 0.90197 1.05864 1.21483 0.95110 0.96928 0.92450 1.20953 1.00204 0.91364 1.04447 1.23312 0.91628 0.96493 0.99391 1.67523 1.40457 0.97384 1.08606 1.20330 0.89159 0.92413 1.11997 1.18243 0.82905 0.87900 0.76298 1.90817 1.72574 1.29762 1.51347 1.45688 1.04855 1.10056 1.73037 1.21897 0.88798 0.86816 0.97149 0.91142 1.24237 0.99760 1.00784 0.96579 1.21044 0.95495 0.83577 0.93873 0.90640 1.42241 1.45592 1.02759 1.44590 1.19659 1.13531 0.89510 1.14547 0.90148 1.25620 1.01932 0.98872 1.00593 1.69850 1.42671 1.13846 1.35835 0.85167 0.78840 0.77579 0.77894 1.19916 1.22445 1.20579 1.23371 0.94159 0.99040 0.95321 1.22533 1.01735 0.92899 0.95956 1.22758 1.01861 0.94294 0.97047 1.22571 1.00911 0.97565 0.95231 0.87414 0.90450 0.90464 0.80687 0.88683 0.88722 0.89695 0.78399 0.74413 0.88226 0.94343 0.79679 0.94127 0.88067 0.89782 0.90629 0.89651 0.94162 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.27 16 2 O -0.31 -8.94 8.56 -68.66 -0.59 -9.53 16 3 C 0.13 3.25 6.71 22.93 0.15 3.41 16 4 C -0.18 -2.69 8.80 22.55 0.20 -2.49 16 5 C -0.06 -0.65 5.90 -19.72 -0.12 -0.77 16 6 C -0.11 -0.30 10.03 71.24 0.71 0.42 16 7 C 0.05 0.79 10.85 84.89 0.92 1.72 16 8 N -0.43 -9.85 9.54 -184.63 -1.76 -11.61 16 9 C 0.00 -0.09 6.76 41.93 0.28 0.19 16 10 C 0.56 20.80 7.80 86.78 0.68 21.47 16 11 O -0.57 -26.13 14.74 17.09 0.25 -25.88 16 12 N -0.68 -22.60 5.27 -443.55 -2.34 -24.94 16 13 C 0.16 6.12 4.05 45.38 0.18 6.31 16 14 H 0.07 3.38 7.46 -2.38 -0.02 3.37 16 15 C -0.17 -6.76 7.71 31.33 0.24 -6.52 16 16 C 0.17 7.14 4.35 45.28 0.20 7.34 16 17 H 0.08 3.00 8.11 -2.39 -0.02 2.98 16 18 N -0.72 -38.12 5.11 -321.56 -1.64 -39.77 16 19 C -0.24 -13.86 9.97 84.03 0.84 -13.02 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 22 N -0.97 -62.46 13.06 21.65 0.28 -62.18 16 23 Si 0.98 47.87 29.55 68.60 2.03 49.89 16 24 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 27 C -0.12 -4.02 0.91 -52.31 -0.05 -4.07 16 28 C -0.09 -2.33 7.47 30.89 0.23 -2.10 16 29 C -0.12 -3.13 8.08 31.23 0.25 -2.88 16 30 C -0.12 -4.37 7.46 30.88 0.23 -4.14 16 31 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.08 0.83 7.70 -2.39 -0.02 0.81 16 33 H 0.08 0.83 7.70 -2.39 -0.02 0.81 16 34 H 0.18 1.43 6.46 -2.91 -0.02 1.41 16 35 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.09 0.00 8.09 -2.39 -0.02 -0.02 16 37 H 0.08 0.08 8.09 -2.39 -0.02 0.06 16 38 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.42 11.38 6.05 -92.71 -0.56 10.82 16 40 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.37 21.78 7.78 -92.71 -0.72 21.06 16 43 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.08 1.76 6.42 -2.39 -0.02 1.74 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -82.68 400.66 2.47 -80.20 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -0.30 Total: 41.88 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.54 Total: 1.93 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -5.46 Total: -138.50 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.34 Total: -35.40 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.89 kcal Total: -82.68 2.47 -80.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078648427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.962 kcal (2) G-P(sol) polarization free energy of solvation -82.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.96 seconds