Wall clock time and date at job start Wed Apr 1 2020 05:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35649 * 116.99970 * 2 1 4 4 C 1.39346 * 120.54212 * 0.26560 * 3 2 1 5 5 C 1.38309 * 118.43584 * 180.28770 * 4 3 2 6 6 C 1.50699 * 120.27254 * 179.70584 * 5 4 3 7 7 C 1.38761 * 119.44622 * 359.73140 * 5 4 3 8 8 N 1.31374 * 121.07078 * 359.97008 * 7 5 4 9 9 C 1.32859 * 121.69534 * 0.03312 * 8 7 5 10 10 C 1.47830 * 119.78509 * 179.97438 * 9 8 7 11 11 O 1.21555 * 119.99977 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00087 * 0.02562 * 10 9 8 13 13 C 1.46499 * 120.00425 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.94371 * 336.39941 * 13 12 10 15 15 C 1.53947 * 113.66623 * 107.80773 * 13 12 10 16 16 C 1.53940 * 87.29448 * 139.20809 * 15 13 12 17 17 H 1.09000 * 113.66946 * 89.74182 * 16 15 13 18 18 N 1.46505 * 113.66236 * 220.79726 * 16 15 13 19 19 C 1.36943 * 119.99990 * 252.18832 * 18 16 15 20 20 H 1.08002 * 119.99513 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00205 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99698 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47137 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46939 * 119.99668 * 23 21 19 26 26 H 1.48498 * 109.46992 * 239.99870 * 23 21 19 27 27 C 1.52905 * 86.78782 * 335.26706 * 16 15 13 28 28 C 1.52904 * 121.14213 * 150.61642 * 27 16 15 29 29 C 1.53957 * 86.78105 * 100.82198 * 28 27 16 30 30 C 1.52914 * 121.13770 * 259.18710 * 27 16 15 31 31 H 1.09000 * 109.47441 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47388 * 300.00409 * 1 2 3 33 33 H 1.09003 * 109.46862 * 60.00063 * 1 2 3 34 34 H 1.07999 * 120.77963 * 0.02562 * 4 3 2 35 35 H 1.08993 * 109.47153 * 270.01888 * 6 5 4 36 36 H 1.08995 * 109.47341 * 30.02619 * 6 5 4 37 37 H 1.09004 * 109.47037 * 150.01982 * 6 5 4 38 38 H 1.07999 * 119.46671 * 180.02562 * 7 5 4 39 39 H 0.97005 * 119.99572 * 359.97438 * 12 10 9 40 40 H 1.09003 * 113.57959 * 24.60328 * 15 13 12 41 41 H 1.09003 * 113.57772 * 253.81080 * 15 13 12 42 42 H 0.96996 * 120.00019 * 72.18452 * 18 16 15 43 43 H 0.97001 * 119.99798 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.66244 * 346.35405 * 28 27 16 45 45 H 1.08997 * 113.66842 * 215.29629 * 28 27 16 46 46 H 1.08998 * 113.57948 * 139.33665 * 29 28 27 47 47 H 1.09000 * 113.57875 * 270.13309 * 29 28 27 48 48 H 1.08993 * 113.66382 * 144.70253 * 30 27 16 49 49 H 1.08992 * 113.66018 * 13.64281 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0056 5 6 1.9697 3.5929 -0.0008 6 6 1.2020 4.8897 -0.0018 7 6 3.3572 3.6011 -0.0067 8 7 4.0419 2.4799 -0.0058 9 6 3.4410 1.2950 0.0001 10 6 4.2531 0.0598 0.0003 11 8 3.7074 -1.0264 0.0062 12 7 5.5986 0.1378 -0.0051 13 6 6.4035 -1.0862 -0.0043 14 1 5.8699 -1.9454 0.4022 15 6 7.0982 -1.3698 -1.3485 16 6 8.3338 -1.7981 -0.5363 17 1 8.3429 -2.8573 -0.2794 18 7 9.6017 -1.3382 -1.1084 19 6 10.4449 -2.2326 -1.7121 20 1 10.1753 -3.2770 -1.7661 21 6 11.6465 -1.7970 -2.2536 22 7 11.9752 -0.5242 -2.1872 23 14 12.7970 -3.0171 -3.0764 24 1 12.2005 -4.3758 -3.0194 25 1 13.0023 -2.6253 -4.4941 26 1 14.1029 -3.0202 -2.3696 27 6 7.8035 -0.8999 0.5817 28 6 8.0936 -1.2107 2.0505 29 6 9.1846 -0.1271 1.9742 30 6 8.3828 0.4956 0.8168 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2174 2.3528 0.0104 35 1 1.0127 5.1990 -1.0296 36 1 0.2533 4.7508 0.5165 37 1 1.7850 5.6574 0.5071 38 1 3.8829 4.5445 -0.0113 39 1 6.0341 1.0046 -0.0094 40 1 7.2611 -0.4769 -1.9521 41 1 6.6426 -2.1845 -1.9114 42 1 9.8440 -0.4002 -1.0595 43 1 12.8147 -0.2197 -2.5660 44 1 8.4848 -2.2145 2.2162 45 1 7.2726 -0.9584 2.7215 46 1 9.2336 0.5054 2.8605 47 1 10.1595 -0.5104 1.6726 48 1 7.6430 1.2274 1.1412 49 1 9.0050 0.8547 -0.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078648428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:21 Heat of formation + Delta-G solvation = 21.559798 kcal Electronic energy + Delta-G solvation = -30427.278767 eV Core-core repulsion = 26356.678369 eV Total energy + Delta-G solvation = -4070.600398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 27.17 seconds Orbital eigenvalues (eV) -41.21649 -40.32429 -38.57230 -38.40060 -34.73872 -34.21492 -33.87770 -32.23597 -31.26645 -29.83116 -28.47535 -27.53777 -25.38598 -24.71098 -24.04656 -23.76513 -22.94185 -21.92333 -20.39012 -20.34025 -18.49634 -17.81787 -17.70000 -17.48333 -16.69472 -16.26782 -15.82589 -15.56014 -15.00537 -14.71922 -14.59664 -14.40146 -14.33479 -14.15757 -14.01787 -13.72109 -13.11490 -13.04971 -12.90541 -12.64499 -12.58387 -12.34820 -11.95937 -11.78815 -11.78074 -11.72825 -11.40338 -11.15321 -10.86399 -10.72474 -10.62925 -10.24319 -10.11539 -9.96681 -9.88792 -9.83127 -9.75205 -9.50028 -9.34672 -8.80309 -8.73913 -8.42085 -6.91480 -5.75520 -3.03339 0.40602 0.92060 2.75952 2.84689 3.29535 3.45118 3.51516 3.53240 3.70467 4.03828 4.17822 4.39503 4.54185 4.59217 4.63498 4.70238 4.78261 4.92417 5.05650 5.07001 5.08186 5.11584 5.17544 5.20281 5.35854 5.36332 5.47169 5.52979 5.55093 5.72340 5.78019 6.00321 6.02252 6.05783 6.09770 6.10579 6.17025 6.32178 6.42093 6.50334 6.63343 6.69404 6.77145 6.88880 6.96479 7.03576 7.17336 7.46726 7.74318 7.88511 8.43488 8.46634 9.55171 10.12745 10.47953 11.46940 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.002424 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.369609 B =11549.208839 C =11862.363018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.141 3.859 4 C -0.181 4.181 5 C -0.076 4.076 6 C -0.115 4.115 7 C 0.058 3.942 8 N -0.414 5.414 9 C 0.040 3.960 10 C 0.569 3.431 11 O -0.523 6.523 12 N -0.693 5.693 13 C 0.130 3.870 14 H 0.110 0.890 15 C -0.173 4.173 16 C 0.193 3.807 17 H 0.081 0.919 18 N -0.706 5.706 19 C -0.239 4.239 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.119 4.119 28 C -0.126 4.126 29 C -0.130 4.130 30 C -0.116 4.116 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.165 0.835 39 H 0.408 0.592 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.387 0.613 43 H 0.254 0.746 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.725 10.517 7.857 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.180 6.180 3 C 0.090 3.910 4 C -0.207 4.207 5 C -0.078 4.078 6 C -0.172 4.172 7 C -0.103 4.103 8 N -0.125 5.125 9 C -0.099 4.099 10 C 0.353 3.647 11 O -0.399 6.399 12 N -0.343 5.343 13 C 0.025 3.975 14 H 0.128 0.872 15 C -0.216 4.216 16 C 0.080 3.920 17 H 0.099 0.901 18 N -0.345 5.345 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.122 4.122 28 C -0.163 4.163 29 C -0.167 4.167 30 C -0.154 4.154 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.162 0.838 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.182 0.818 39 H 0.245 0.755 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.223 0.777 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.108 0.892 48 H 0.091 0.909 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.971 9.316 7.776 26.868 hybrid contribution -0.350 0.413 -0.560 0.779 sum -24.322 9.730 7.216 27.171 Atomic orbital electron populations 1.23217 0.78651 1.04708 1.01090 1.86445 1.20798 1.24454 1.86298 1.20056 0.92307 0.85642 0.93011 1.21608 1.00853 0.91271 1.06968 1.20994 0.95270 0.95752 0.95819 1.20815 0.99861 0.93370 1.03134 1.22621 0.90555 0.96482 1.00672 1.67631 1.39721 0.97367 1.07806 1.20802 0.88623 0.93018 1.07440 1.17608 0.82578 0.87063 0.77445 1.90811 1.71780 1.27516 1.49746 1.45803 1.05056 1.10639 1.72817 1.22326 0.89334 0.87240 0.98601 0.87197 1.24274 0.99251 1.01747 0.96306 1.21055 0.85765 0.95539 0.89660 0.90063 1.42363 1.16895 1.08758 1.66441 1.19354 0.98105 0.90863 1.28756 0.91028 1.24736 0.98246 0.96106 1.01803 1.69668 1.24182 1.13224 1.50959 0.86133 0.80942 0.80305 0.78921 1.20543 1.21945 1.21941 1.23604 0.94342 0.98579 0.95642 1.22697 0.98407 0.99446 0.95764 1.22729 0.98829 0.97604 0.97555 1.22430 0.98861 0.94771 0.99338 0.87587 0.92591 0.92551 0.83757 0.90197 0.91075 0.90465 0.81823 0.75535 0.90154 0.92125 0.77737 0.93578 0.91529 0.91065 0.92612 0.89175 0.90931 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.83 101.05 0.99 1.13 16 2 O -0.27 -3.46 8.56 -40.60 -0.35 -3.80 16 3 C 0.14 1.74 6.71 -38.55 -0.26 1.48 16 4 C -0.18 -1.57 8.81 -39.14 -0.34 -1.91 16 5 C -0.08 -0.59 5.90 -104.40 -0.62 -1.21 16 6 C -0.11 -0.48 10.03 36.01 0.36 -0.12 16 7 C 0.06 0.54 10.85 -17.55 -0.19 0.35 16 8 N -0.41 -5.25 9.54 -9.71 -0.09 -5.34 16 9 C 0.04 0.57 6.76 -82.88 -0.56 0.01 16 10 C 0.57 9.51 7.80 -12.34 -0.10 9.42 16 11 O -0.52 -10.09 14.74 -16.63 -0.25 -10.34 16 12 N -0.69 -10.97 5.24 -54.32 -0.28 -11.25 16 13 C 0.13 2.18 4.12 -67.48 -0.28 1.90 16 14 H 0.11 1.91 7.46 -51.93 -0.39 1.52 16 15 C -0.17 -3.27 7.68 -25.76 -0.20 -3.46 16 16 C 0.19 3.88 4.36 -67.49 -0.29 3.59 16 17 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 18 N -0.71 -17.36 5.32 -52.99 -0.28 -17.64 16 19 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 23 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C -0.12 -2.02 1.06 -154.71 -0.16 -2.18 16 28 C -0.13 -1.96 7.84 -26.28 -0.21 -2.16 16 29 C -0.13 -2.10 8.08 -25.74 -0.21 -2.30 16 30 C -0.12 -1.91 6.78 -26.28 -0.18 -2.08 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.30 7.69 -51.93 -0.40 -0.10 16 33 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 34 H 0.14 0.82 6.46 -52.49 -0.34 0.48 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 37 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 38 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.41 6.09 6.36 -40.82 -0.26 5.83 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.39 10.00 5.92 -40.82 -0.24 9.76 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 48 H 0.07 1.05 7.03 -51.93 -0.36 0.69 16 49 H 0.08 1.46 6.42 -51.93 -0.33 1.13 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -33.52 398.07 -9.37 -42.89 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -7.34 Total: 13.94 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.48 Total: -4.76 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.07 Total: -61.35 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.59 Total: -14.14 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.52 -9.37 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078648428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.451 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.18 seconds