Wall clock time and date at job start Wed Apr 1 2020 05:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35649 * 116.99970 * 2 1 4 4 C 1.39346 * 120.54212 * 0.26560 * 3 2 1 5 5 C 1.38309 * 118.43584 * 180.28770 * 4 3 2 6 6 C 1.50699 * 120.27254 * 179.70584 * 5 4 3 7 7 C 1.38761 * 119.44622 * 359.73140 * 5 4 3 8 8 N 1.31374 * 121.07078 * 359.97008 * 7 5 4 9 9 C 1.32859 * 121.69534 * 0.03312 * 8 7 5 10 10 C 1.47830 * 119.78509 * 179.97438 * 9 8 7 11 11 O 1.21555 * 119.99977 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00087 * 0.02562 * 10 9 8 13 13 C 1.46499 * 120.00425 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.94371 * 336.39941 * 13 12 10 15 15 C 1.53947 * 113.66623 * 107.80773 * 13 12 10 16 16 C 1.53940 * 87.29448 * 139.20809 * 15 13 12 17 17 H 1.09000 * 113.66946 * 89.74182 * 16 15 13 18 18 N 1.46505 * 113.66236 * 220.79726 * 16 15 13 19 19 C 1.36943 * 119.99990 * 252.18832 * 18 16 15 20 20 H 1.08002 * 119.99513 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00205 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99698 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47137 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46939 * 119.99668 * 23 21 19 26 26 H 1.48498 * 109.46992 * 239.99870 * 23 21 19 27 27 C 1.52905 * 86.78782 * 335.26706 * 16 15 13 28 28 C 1.52904 * 121.14213 * 150.61642 * 27 16 15 29 29 C 1.53957 * 86.78105 * 100.82198 * 28 27 16 30 30 C 1.52914 * 121.13770 * 259.18710 * 27 16 15 31 31 H 1.09000 * 109.47441 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47388 * 300.00409 * 1 2 3 33 33 H 1.09003 * 109.46862 * 60.00063 * 1 2 3 34 34 H 1.07999 * 120.77963 * 0.02562 * 4 3 2 35 35 H 1.08993 * 109.47153 * 270.01888 * 6 5 4 36 36 H 1.08995 * 109.47341 * 30.02619 * 6 5 4 37 37 H 1.09004 * 109.47037 * 150.01982 * 6 5 4 38 38 H 1.07999 * 119.46671 * 180.02562 * 7 5 4 39 39 H 0.97005 * 119.99572 * 359.97438 * 12 10 9 40 40 H 1.09003 * 113.57959 * 24.60328 * 15 13 12 41 41 H 1.09003 * 113.57772 * 253.81080 * 15 13 12 42 42 H 0.96996 * 120.00019 * 72.18452 * 18 16 15 43 43 H 0.97001 * 119.99798 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.66244 * 346.35405 * 28 27 16 45 45 H 1.08997 * 113.66842 * 215.29629 * 28 27 16 46 46 H 1.08998 * 113.57948 * 139.33665 * 29 28 27 47 47 H 1.09000 * 113.57875 * 270.13309 * 29 28 27 48 48 H 1.08993 * 113.66382 * 144.70253 * 30 27 16 49 49 H 1.08992 * 113.66018 * 13.64281 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0056 5 6 1.9697 3.5929 -0.0008 6 6 1.2020 4.8897 -0.0018 7 6 3.3572 3.6011 -0.0067 8 7 4.0419 2.4799 -0.0058 9 6 3.4410 1.2950 0.0001 10 6 4.2531 0.0598 0.0003 11 8 3.7074 -1.0264 0.0062 12 7 5.5986 0.1378 -0.0051 13 6 6.4035 -1.0862 -0.0043 14 1 5.8699 -1.9454 0.4022 15 6 7.0982 -1.3698 -1.3485 16 6 8.3338 -1.7981 -0.5363 17 1 8.3429 -2.8573 -0.2794 18 7 9.6017 -1.3382 -1.1084 19 6 10.4449 -2.2326 -1.7121 20 1 10.1753 -3.2770 -1.7661 21 6 11.6465 -1.7970 -2.2536 22 7 11.9752 -0.5242 -2.1872 23 14 12.7970 -3.0171 -3.0764 24 1 12.2005 -4.3758 -3.0194 25 1 13.0023 -2.6253 -4.4941 26 1 14.1029 -3.0202 -2.3696 27 6 7.8035 -0.8999 0.5817 28 6 8.0936 -1.2107 2.0505 29 6 9.1846 -0.1271 1.9742 30 6 8.3828 0.4956 0.8168 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2174 2.3528 0.0104 35 1 1.0127 5.1990 -1.0296 36 1 0.2533 4.7508 0.5165 37 1 1.7850 5.6574 0.5071 38 1 3.8829 4.5445 -0.0113 39 1 6.0341 1.0046 -0.0094 40 1 7.2611 -0.4769 -1.9521 41 1 6.6426 -2.1845 -1.9114 42 1 9.8440 -0.4002 -1.0595 43 1 12.8147 -0.2197 -2.5660 44 1 8.4848 -2.2145 2.2162 45 1 7.2726 -0.9584 2.7215 46 1 9.2336 0.5054 2.8605 47 1 10.1595 -0.5104 1.6726 48 1 7.6430 1.2274 1.1412 49 1 9.0050 0.8547 -0.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078648428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:08 Heat of formation + Delta-G solvation = 0.166032 kcal Electronic energy + Delta-G solvation = -30428.206470 eV Core-core repulsion = 26356.678369 eV Total energy + Delta-G solvation = -4071.528102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 14.89 seconds Orbital eigenvalues (eV) -42.15973 -41.62921 -39.70895 -39.28172 -36.27133 -35.70623 -34.85237 -33.81970 -32.05077 -31.70313 -29.08066 -28.23024 -26.80333 -26.35155 -25.53463 -24.77313 -23.98831 -23.08749 -21.80993 -21.60512 -19.71768 -19.43862 -18.55164 -18.53656 -18.10754 -17.26979 -17.03478 -16.60741 -16.43453 -16.29107 -15.82550 -15.80861 -15.22725 -14.96171 -14.88207 -14.77282 -14.62342 -14.24851 -13.86121 -13.59325 -13.58269 -13.40618 -13.18845 -13.10901 -12.99576 -12.89248 -12.74238 -12.41118 -12.39344 -12.29278 -12.24517 -12.01678 -11.85428 -11.38039 -11.30019 -11.09415 -10.98841 -10.72670 -10.60419 -10.53177 -9.90190 -9.45066 -8.94599 -7.92767 -5.20021 -0.40776 0.19738 1.47794 1.48071 1.58100 1.72074 2.09364 2.20233 2.57745 2.77338 3.18773 3.37912 3.49901 3.52803 3.61729 3.70537 3.78306 3.90076 3.94883 4.01068 4.05170 4.12009 4.23052 4.24854 4.31075 4.33821 4.54677 4.60271 4.65920 4.72548 4.73470 4.78696 4.84418 4.85519 4.87154 5.01071 5.09064 5.12716 5.14868 5.18819 5.20130 5.35862 5.46782 5.51476 5.53460 5.63431 5.69703 6.19351 6.29538 6.48849 6.80553 7.22945 7.36670 8.12007 8.37504 9.30527 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.002424 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.369609 B =11549.208839 C =11862.363018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.307 6.307 3 C 0.131 3.869 4 C -0.177 4.177 5 C -0.058 4.058 6 C -0.113 4.113 7 C 0.051 3.949 8 N -0.435 5.435 9 C -0.005 4.005 10 C 0.566 3.434 11 O -0.559 6.559 12 N -0.689 5.689 13 C 0.146 3.854 14 H 0.108 0.892 15 C -0.169 4.169 16 C 0.179 3.821 17 H 0.080 0.920 18 N -0.715 5.715 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.296 1.296 26 H -0.293 1.293 27 C -0.111 4.111 28 C -0.115 4.115 29 C -0.126 4.126 30 C -0.111 4.111 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.178 0.822 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.192 0.808 39 H 0.412 0.588 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.378 0.622 43 H 0.250 0.750 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.344 12.238 8.871 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.217 6.217 3 C 0.080 3.920 4 C -0.203 4.203 5 C -0.060 4.060 6 C -0.170 4.170 7 C -0.112 4.112 8 N -0.146 5.146 9 C -0.141 4.141 10 C 0.352 3.648 11 O -0.437 6.437 12 N -0.339 5.339 13 C 0.041 3.959 14 H 0.125 0.875 15 C -0.211 4.211 16 C 0.068 3.932 17 H 0.098 0.902 18 N -0.354 5.354 19 C -0.372 4.372 20 H 0.092 0.908 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.799 3.201 24 H -0.193 1.193 25 H -0.223 1.223 26 H -0.221 1.221 27 C -0.114 4.114 28 C -0.152 4.152 29 C -0.164 4.164 30 C -0.148 4.148 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.195 0.805 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.209 0.791 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.213 0.787 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.115 0.885 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.634 11.009 8.808 30.135 hybrid contribution 0.279 -0.016 -0.875 0.919 sum -26.354 10.993 7.933 29.637 Atomic orbital electron populations 1.23524 0.76161 1.05885 1.02940 1.86387 1.23576 1.25386 1.86389 1.20234 0.91985 0.86740 0.93026 1.21988 1.02327 0.90154 1.05784 1.21457 0.94881 0.97131 0.92572 1.20947 1.00268 0.91416 1.04372 1.23241 0.91794 0.96415 0.99740 1.67536 1.40730 0.97707 1.08616 1.20427 0.89357 0.92499 1.11813 1.18085 0.82585 0.87859 0.76261 1.90768 1.72363 1.29125 1.51466 1.45696 1.05076 1.10235 1.72871 1.22014 0.89359 0.87849 0.96711 0.87459 1.24121 0.98939 1.00958 0.97115 1.21278 0.84401 0.96173 0.91372 0.90221 1.42457 1.18067 1.08016 1.66835 1.19707 0.98352 0.91386 1.27732 0.90765 1.25488 0.99999 0.97734 1.03326 1.69815 1.24502 1.14906 1.52527 0.85131 0.78788 0.78790 0.77408 1.19254 1.22302 1.22061 1.23387 0.93595 0.98517 0.95878 1.22685 0.98658 0.99279 0.94584 1.22630 0.97337 0.98119 0.98294 1.22433 0.98992 0.94777 0.98645 0.86973 0.90504 0.90747 0.80478 0.88843 0.89402 0.88990 0.79096 0.75008 0.91577 0.92422 0.78733 0.94087 0.91640 0.88847 0.89988 0.92288 0.88457 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.83 113.37 1.11 1.23 16 2 O -0.31 -7.78 8.56 -68.65 -0.59 -8.37 16 3 C 0.13 3.14 6.71 22.94 0.15 3.29 16 4 C -0.18 -2.57 8.81 22.55 0.20 -2.37 16 5 C -0.06 -0.71 5.90 -19.72 -0.12 -0.82 16 6 C -0.11 -0.41 10.03 71.24 0.71 0.30 16 7 C 0.05 0.84 10.85 84.89 0.92 1.76 16 8 N -0.43 -10.69 9.54 -184.63 -1.76 -12.45 16 9 C 0.00 -0.13 6.76 41.93 0.28 0.15 16 10 C 0.57 19.42 7.80 86.78 0.68 20.10 16 11 O -0.56 -22.34 14.74 17.10 0.25 -22.09 16 12 N -0.69 -22.15 5.24 -444.04 -2.33 -24.48 16 13 C 0.15 5.00 4.12 45.28 0.19 5.19 16 14 H 0.11 3.79 7.46 -2.39 -0.02 3.77 16 15 C -0.17 -6.60 7.68 31.23 0.24 -6.36 16 16 C 0.18 7.41 4.36 45.28 0.20 7.61 16 17 H 0.08 3.30 8.10 -2.39 -0.02 3.28 16 18 N -0.72 -36.39 5.32 -321.57 -1.71 -38.10 16 19 C -0.24 -13.47 9.97 84.03 0.84 -12.64 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 22 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 23 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 27 C -0.11 -3.80 1.06 -52.31 -0.06 -3.86 16 28 C -0.11 -3.45 7.84 30.89 0.24 -3.21 16 29 C -0.13 -4.01 8.08 31.23 0.25 -3.76 16 30 C -0.11 -3.63 6.78 30.89 0.21 -3.42 16 31 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 0.62 7.69 -2.39 -0.02 0.60 16 33 H 0.07 0.64 7.71 -2.39 -0.02 0.62 16 34 H 0.18 1.27 6.46 -2.91 -0.02 1.25 16 35 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.09 0.10 8.09 -2.39 -0.02 0.08 16 37 H 0.09 0.14 8.09 -2.39 -0.02 0.12 16 38 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.41 12.41 6.36 -92.70 -0.59 11.82 16 40 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.38 20.43 5.92 -92.71 -0.55 19.88 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.10 2.71 7.03 -2.39 -0.02 2.69 16 49 H 0.05 2.00 6.42 -2.39 -0.02 1.99 16 Total: -1.00 -76.20 398.07 2.55 -73.65 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.15 Total: 42.56 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 6.52 Total: -0.59 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -5.52 Total: -134.16 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.34 Total: -30.46 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -76.20 2.55 -73.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078648428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.819 kcal (2) G-P(sol) polarization free energy of solvation -76.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.89 seconds