Wall clock time and date at job start Wed Apr 1 2020 03:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35648 * 116.99953 * 2 1 4 4 C 1.39343 * 120.53935 * 359.97438 * 3 2 1 5 5 C 1.38305 * 118.43847 * 180.02562 * 4 3 2 6 6 C 1.50702 * 120.27611 * 180.02562 * 5 4 3 7 7 C 1.38759 * 119.44522 * 359.97438 * 5 4 3 8 8 N 1.31384 * 121.06654 * 0.02562 * 7 5 4 9 9 C 1.32855 * 121.69434 * 359.97438 * 8 7 5 10 10 C 1.47836 * 119.77983 * 180.02562 * 9 8 7 11 11 O 1.21555 * 119.99618 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00087 * 0.02562 * 10 9 8 13 13 C 1.46494 * 120.00202 * 180.02562 * 12 10 9 14 14 C 1.54323 * 111.69140 * 298.98945 * 13 12 10 15 15 C 1.55054 * 103.93677 * 262.78643 * 14 13 12 16 16 C 1.55048 * 102.11125 * 319.94285 * 15 14 13 17 17 C 1.54323 * 103.93578 * 40.05847 * 16 15 14 18 18 H 1.09004 * 111.02072 * 96.80634 * 17 16 15 19 19 C 1.53779 * 109.79233 * 221.69121 * 17 16 15 20 20 N 1.47210 * 106.37990 * 95.21396 * 19 17 16 21 21 C 1.36940 * 126.70310 * 211.28780 * 20 19 17 22 22 H 1.08001 * 120.00031 * 180.02562 * 21 20 19 23 23 C 1.38817 * 119.99749 * 0.02562 * 21 20 19 24 24 N 1.31615 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99898 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47067 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47218 * 119.99764 * 25 23 21 28 28 H 1.48495 * 109.47373 * 240.00136 * 25 23 21 29 29 C 1.48672 * 107.09192 * 30.74296 * 20 19 17 30 30 H 1.09009 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47572 * 300.00013 * 1 2 3 32 32 H 1.08997 * 109.47159 * 60.00570 * 1 2 3 33 33 H 1.08004 * 120.78012 * 359.97438 * 4 3 2 34 34 H 1.08996 * 109.46957 * 269.97411 * 6 5 4 35 35 H 1.09001 * 109.46808 * 29.97442 * 6 5 4 36 36 H 1.09000 * 109.46641 * 149.97195 * 6 5 4 37 37 H 1.08003 * 119.46754 * 179.97438 * 7 5 4 38 38 H 0.97002 * 119.99559 * 0.02562 * 12 10 9 39 39 H 1.09005 * 110.53649 * 21.39453 * 14 13 12 40 40 H 1.09001 * 110.53719 * 144.16969 * 14 13 12 41 41 H 1.09001 * 110.90669 * 78.15142 * 15 14 13 42 42 H 1.09006 * 110.90308 * 201.70640 * 15 14 13 43 43 H 1.09004 * 110.53799 * 158.66921 * 16 15 14 44 44 H 1.08996 * 110.53932 * 281.30633 * 16 15 14 45 45 H 1.09003 * 110.07530 * 214.44649 * 19 17 16 46 46 H 1.09007 * 110.07088 * 335.98681 * 19 17 16 47 47 H 0.97004 * 119.99763 * 179.97438 * 24 23 21 48 48 H 1.09007 * 110.91195 * 210.52345 * 29 20 19 49 49 H 1.09001 * 109.94195 * 88.52475 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9696 3.5928 -0.0011 6 6 1.2019 4.8897 -0.0011 7 6 3.3571 3.6012 -0.0005 8 7 4.0419 2.4799 0.0000 9 6 3.4409 1.2950 0.0005 10 6 4.2531 0.0598 0.0017 11 8 3.7074 -1.0264 0.0017 12 7 5.5986 0.1379 0.0027 13 6 6.4035 -1.0861 0.0033 14 6 6.1352 -1.9445 1.2573 15 6 7.2857 -1.5629 2.2243 16 6 8.4983 -1.4620 1.2633 17 6 7.9210 -0.7762 0.0072 18 1 8.1146 0.2964 0.0234 19 6 8.4765 -1.4526 -1.2572 20 7 7.4774 -2.4536 -1.6656 21 6 7.7222 -3.6440 -2.2968 22 1 6.9023 -4.3004 -2.5484 23 6 9.0241 -4.0069 -2.6133 24 7 10.0233 -3.2071 -2.3063 25 14 9.3580 -5.6303 -3.4750 26 1 8.0745 -6.3401 -3.7081 27 1 10.0237 -5.3719 -4.7770 28 1 10.2409 -6.4693 -2.6254 29 6 6.1464 -1.9365 -1.2518 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.2174 2.3527 -0.0014 34 1 1.0169 5.2023 -1.0287 35 1 0.2510 4.7489 0.5128 36 1 1.7827 5.6556 0.5128 37 1 3.8828 4.5447 -0.0013 38 1 6.0340 1.0048 0.0031 39 1 5.1691 -1.6919 1.6942 40 1 6.1788 -3.0055 1.0110 41 1 7.0887 -0.6042 2.7040 42 1 7.4429 -2.3433 2.9690 43 1 9.2860 -0.8512 1.7044 44 1 8.8768 -2.4547 1.0196 45 1 8.6115 -0.7144 -2.0479 46 1 9.4255 -1.9405 -1.0342 47 1 10.9332 -3.4609 -2.5271 48 1 5.4669 -2.7556 -1.0160 49 1 5.7256 -1.3170 -2.0438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098878845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:44 Heat of formation + Delta-G solvation = -28.332164 kcal Electronic energy + Delta-G solvation = -31333.354470 eV Core-core repulsion = 27260.590594 eV Total energy + Delta-G solvation = -4072.763876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.11468 -41.23698 -39.32263 -39.19586 -36.19652 -35.00176 -34.34670 -33.34626 -32.03262 -31.04171 -29.74339 -28.87756 -28.01780 -26.32282 -26.22347 -24.59027 -23.60792 -22.56405 -22.24788 -21.10311 -20.26917 -19.27165 -18.77454 -18.43107 -18.10426 -17.13887 -17.00708 -16.67927 -16.33421 -15.97133 -15.57702 -15.37222 -15.18133 -14.99982 -14.97042 -14.74794 -14.67756 -14.54472 -14.33491 -13.62022 -13.58575 -13.50342 -13.09210 -12.99073 -12.83094 -12.75156 -12.40892 -12.39158 -12.18603 -12.09466 -12.02671 -11.85282 -11.73303 -11.67634 -11.59637 -11.43074 -11.12116 -10.75928 -10.56904 -10.51949 -10.03282 -9.45222 -8.92497 -7.75463 -5.23589 -0.38913 0.21010 1.45611 1.46824 1.57438 1.77059 2.07324 2.20304 2.48885 2.79879 3.18972 3.30520 3.45981 3.53774 3.64534 3.73167 3.83413 3.89299 3.91445 4.06430 4.22054 4.29727 4.32965 4.39549 4.40307 4.49188 4.59887 4.61439 4.69851 4.71963 4.78729 4.82961 4.86627 4.92266 4.95417 5.02926 5.10201 5.15803 5.19619 5.21228 5.27071 5.41408 5.46314 5.48083 5.60028 5.72186 5.81895 6.20770 6.36529 6.52403 6.83127 7.10143 7.29986 7.72724 8.41413 9.23446 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.002884 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.504820 B = 9706.232999 C =10183.910054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.308 6.308 3 C 0.129 3.871 4 C -0.177 4.177 5 C -0.059 4.059 6 C -0.112 4.112 7 C 0.052 3.948 8 N -0.433 5.433 9 C -0.002 4.002 10 C 0.564 3.436 11 O -0.550 6.550 12 N -0.688 5.688 13 C 0.171 3.829 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.103 4.103 17 C -0.103 4.103 18 H 0.099 0.901 19 C 0.146 3.854 20 N -0.613 5.613 21 C -0.238 4.238 22 H 0.072 0.928 23 C -0.061 4.061 24 N -0.942 5.942 25 Si 0.982 3.018 26 H -0.273 1.273 27 H -0.289 1.289 28 H -0.285 1.285 29 C 0.143 3.857 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.177 0.823 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.196 0.804 38 H 0.413 0.587 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.045 0.955 45 H -0.022 1.022 46 H 0.107 0.893 47 H 0.250 0.750 48 H 0.033 0.967 49 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.089 19.528 10.019 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.219 6.219 3 C 0.078 3.922 4 C -0.203 4.203 5 C -0.061 4.061 6 C -0.169 4.169 7 C -0.111 4.111 8 N -0.145 5.145 9 C -0.138 4.138 10 C 0.350 3.650 11 O -0.427 6.427 12 N -0.340 5.340 13 C 0.083 3.917 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.140 4.140 17 C -0.123 4.123 18 H 0.117 0.883 19 C 0.021 3.979 20 N -0.338 5.338 21 C -0.366 4.366 22 H 0.090 0.910 23 C -0.253 4.253 24 N -0.592 5.592 25 Si 0.810 3.190 26 H -0.198 1.198 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.017 3.983 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.194 0.806 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.212 0.788 38 H 0.251 0.749 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.064 0.936 45 H -0.004 1.004 46 H 0.124 0.876 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -18.324 18.329 9.917 27.750 hybrid contribution -0.609 -0.731 -1.043 1.412 sum -18.932 17.598 8.874 27.329 Atomic orbital electron populations 1.23506 0.76238 1.05748 1.02940 1.86405 1.23535 1.25522 1.86404 1.20252 0.92021 0.86751 0.93138 1.21981 1.02283 0.90170 1.05839 1.21469 0.94976 0.97054 0.92635 1.20943 1.00241 0.91367 1.04357 1.23277 0.91730 0.96432 0.99620 1.67537 1.40666 0.97606 1.08645 1.20397 0.89292 0.92429 1.11715 1.18095 0.82414 0.88008 0.76452 1.90795 1.72280 1.29080 1.50516 1.45740 1.05164 1.09339 1.73715 1.21513 0.90755 0.84415 0.94984 1.22545 0.99089 0.98246 0.94747 1.22545 0.93447 1.02014 0.96654 1.22341 0.97816 1.00092 0.93793 1.22928 0.91678 1.00351 0.97329 0.88282 1.21831 0.96082 0.89178 0.90824 1.45051 1.01564 1.19118 1.68100 1.19429 0.92866 0.94520 1.29814 0.91047 1.25560 0.95042 1.02148 1.02585 1.69831 0.98607 1.37544 1.53227 0.84967 0.77664 0.78919 0.77490 1.19824 1.21623 1.21188 1.21801 0.87934 0.95091 0.93516 0.87248 0.90361 0.90778 0.80564 0.88876 0.89497 0.88815 0.78772 0.74926 0.91956 0.93149 0.89880 0.90536 0.89482 0.93588 1.00362 0.87556 0.93980 0.94827 0.98579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.27 16 2 O -0.31 -8.74 8.56 -68.64 -0.59 -9.32 16 3 C 0.13 3.40 6.71 22.93 0.15 3.55 16 4 C -0.18 -2.86 8.80 22.55 0.20 -2.66 16 5 C -0.06 -0.77 5.90 -19.72 -0.12 -0.89 16 6 C -0.11 -0.46 10.03 71.24 0.71 0.25 16 7 C 0.05 0.88 10.85 84.88 0.92 1.80 16 8 N -0.43 -11.11 9.54 -184.63 -1.76 -12.87 16 9 C 0.00 -0.07 6.76 41.93 0.28 0.22 16 10 C 0.56 21.39 7.09 86.78 0.62 22.01 16 11 O -0.55 -24.36 13.05 17.10 0.22 -24.14 16 12 N -0.69 -24.87 5.18 -419.67 -2.17 -27.05 16 13 C 0.17 7.01 0.93 4.96 0.00 7.01 16 14 C -0.11 -4.20 5.50 31.75 0.17 -4.02 16 15 C -0.11 -3.45 6.92 32.00 0.22 -3.23 16 16 C -0.10 -3.68 6.25 31.74 0.20 -3.48 16 17 C -0.10 -4.11 3.63 -9.44 -0.03 -4.14 16 18 H 0.10 3.38 7.71 -2.39 -0.02 3.36 16 19 C 0.15 7.59 5.62 86.51 0.49 8.08 16 20 N -0.61 -34.74 3.42 -691.54 -2.37 -37.11 16 21 C -0.24 -14.34 10.33 84.03 0.87 -13.48 16 22 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 23 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 24 N -0.94 -56.87 10.08 21.65 0.22 -56.65 16 25 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 C 0.14 7.29 5.36 86.22 0.46 7.75 16 30 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.08 0.80 7.70 -2.39 -0.02 0.78 16 32 H 0.07 0.83 7.70 -2.39 -0.02 0.81 16 33 H 0.18 1.56 6.46 -2.91 -0.02 1.54 16 34 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.09 0.16 8.09 -2.39 -0.02 0.14 16 36 H 0.09 0.14 8.09 -2.39 -0.02 0.12 16 37 H 0.20 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.41 13.10 7.62 -92.71 -0.71 12.39 16 39 H 0.06 2.44 6.64 -2.38 -0.02 2.43 16 40 H 0.05 2.22 7.57 -2.39 -0.02 2.20 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.05 1.97 7.62 -2.39 -0.02 1.95 16 45 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 46 H 0.11 6.07 4.93 -2.38 -0.01 6.06 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 48 H 0.03 1.80 7.52 -2.38 -0.02 1.79 16 49 H 0.00 -0.19 8.05 -2.39 -0.02 -0.21 16 Total: -1.00 -80.63 385.44 2.58 -78.05 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.27 Total: 22.56 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 6.73 Total: 16.93 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -6.08 Total: -133.68 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.36 Total: -33.46 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -80.63 2.58 -78.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098878845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.714 kcal (2) G-P(sol) polarization free energy of solvation -80.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds