Wall clock time and date at job start Wed Apr 1 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36407 * 120.34476 * 2 1 4 4 C 1.40188 * 119.26462 * 180.02562 * 3 2 1 5 5 C 1.35355 * 119.95145 * 0.02562 * 4 3 2 6 6 N 1.35767 * 120.69910 * 359.71845 * 5 4 3 7 7 C 1.46502 * 119.62620 * 180.30275 * 6 5 4 8 8 C 1.50692 * 109.46775 * 270.25639 * 7 6 5 9 9 O 1.21283 * 120.00674 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99513 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47073 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46900 * 179.97438 * 12 11 10 14 14 C 1.29451 * 117.69540 * 94.99718 * 13 12 11 15 15 C 1.50321 * 123.64842 * 180.85673 * 14 13 12 16 16 N 1.47006 * 109.16914 * 349.02524 * 15 14 13 17 17 C 1.36938 * 121.37549 * 222.97141 * 16 15 14 18 18 H 1.08002 * 120.00131 * 155.97687 * 17 16 15 19 19 C 1.38813 * 120.00011 * 335.97728 * 17 16 15 20 20 N 1.31625 * 119.99807 * 344.49188 * 19 17 16 21 21 Si 1.86798 * 120.00400 * 164.49713 * 19 17 16 22 22 H 1.48502 * 109.47042 * 94.44673 * 21 19 17 23 23 H 1.48498 * 109.47447 * 214.45069 * 21 19 17 24 24 H 1.48501 * 109.46779 * 334.45197 * 21 19 17 25 25 C 1.47339 * 117.25141 * 42.94397 * 16 15 14 26 26 C 1.49967 * 117.69007 * 274.73824 * 13 12 11 27 27 C 1.34662 * 120.74578 * 0.56528 * 6 5 4 28 28 O 1.22062 * 119.98219 * 179.72209 * 27 6 5 29 29 H 1.08996 * 109.47052 * 269.97306 * 1 2 3 30 30 H 1.08997 * 109.47563 * 29.97490 * 1 2 3 31 31 H 1.09007 * 109.46941 * 149.97609 * 1 2 3 32 32 H 1.07999 * 120.36453 * 0.05083 * 3 2 1 33 33 H 1.07998 * 120.02705 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.64961 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47032 * 30.25659 * 7 6 5 36 36 H 1.09003 * 109.46660 * 150.25476 * 7 6 5 37 37 H 0.96998 * 120.00284 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.46688 * 299.99837 * 11 10 8 39 39 H 1.08998 * 109.47224 * 59.99421 * 11 10 8 40 40 H 1.08997 * 109.47031 * 299.99590 * 12 11 10 41 41 H 1.08999 * 109.47055 * 59.99959 * 12 11 10 42 42 H 1.07995 * 118.17549 * 0.88158 * 14 13 12 43 43 H 1.09000 * 109.52327 * 108.93300 * 15 14 13 44 44 H 1.09002 * 109.51991 * 229.11726 * 15 14 13 45 45 H 0.97001 * 119.99638 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.77404 * 57.81087 * 25 16 15 47 47 H 1.08999 * 109.77684 * 178.62196 * 25 16 15 48 48 H 1.09008 * 109.31756 * 281.28859 * 26 13 12 49 49 H 1.09003 * 109.31857 * 40.71796 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1772 0.0000 4 6 3.5978 1.1508 -0.0005 5 6 4.2513 -0.0345 -0.0016 6 7 3.5637 -1.2052 0.0036 7 6 4.2950 -2.4746 0.0091 8 6 4.5510 -2.9128 -1.4098 9 8 4.1615 -2.2317 -2.3346 10 7 5.2129 -4.0619 -1.6511 11 6 5.4624 -4.4877 -3.0305 12 6 6.2260 -5.8135 -3.0248 13 6 6.4821 -6.2519 -4.4437 14 6 7.6206 -5.9385 -4.9741 15 6 8.0082 -6.2908 -6.3831 16 7 7.0291 -7.2413 -6.9298 17 6 7.4236 -8.3299 -7.6608 18 1 6.7847 -9.1984 -7.7239 19 6 8.6447 -8.3172 -8.3208 20 7 9.2813 -7.1800 -8.5052 21 14 9.3845 -9.9139 -8.9475 22 1 9.0059 -10.1101 -10.3700 23 1 10.8638 -9.8528 -8.8328 24 1 8.8717 -11.0483 -8.1378 25 6 5.6057 -6.9746 -6.6582 26 6 5.4022 -7.0255 -5.1397 27 6 2.2171 -1.2127 -0.0015 28 8 1.6130 -2.2733 -0.0018 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6678 2.1191 0.0008 33 1 4.1557 2.0755 -0.0010 34 1 5.3312 -0.0492 -0.0016 35 1 5.2456 -2.3441 0.5262 36 1 3.7032 -3.2326 0.5224 37 1 5.5248 -4.6065 -0.9115 38 1 4.5119 -4.6176 -3.5481 39 1 6.0547 -3.7299 -3.5433 40 1 7.1764 -5.6831 -2.5073 41 1 5.6340 -6.5715 -2.5119 42 1 8.3316 -5.3939 -4.3706 43 1 8.0201 -5.3883 -6.9942 44 1 8.9985 -6.7463 -6.3853 45 1 10.1348 -7.1712 -8.9661 46 1 5.3363 -5.9889 -7.0374 47 1 4.9899 -7.7359 -7.1372 48 1 5.4274 -8.0622 -4.8035 49 1 4.4325 -6.5930 -4.8931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160125428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:21 Heat of formation + Delta-G solvation = -24.721993 kcal Electronic energy + Delta-G solvation = -29158.574865 eV Core-core repulsion = 25085.967537 eV Total energy + Delta-G solvation = -4072.607328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.54619 -40.62273 -39.47365 -37.96937 -36.85510 -36.07445 -35.17294 -33.24091 -32.22517 -31.53122 -30.69434 -29.12284 -28.11510 -27.00202 -24.84784 -24.28557 -23.65308 -23.39559 -22.50323 -21.73884 -19.48555 -18.71262 -18.53859 -18.33781 -17.61782 -17.32219 -17.04071 -16.66684 -16.58240 -16.30314 -15.75511 -15.55866 -15.34255 -15.24954 -15.06282 -14.82098 -14.72988 -14.34317 -13.95087 -13.86078 -13.65292 -13.41681 -13.26993 -13.18353 -13.08597 -12.96425 -12.86197 -12.80607 -12.59482 -12.45366 -12.39111 -12.18596 -11.91753 -11.69875 -11.47254 -11.21439 -11.06255 -10.69871 -10.67968 -10.21922 -9.50731 -8.83239 -8.76738 -7.89621 -5.31777 -0.10851 0.94795 1.34779 1.43731 1.45749 1.46455 1.52123 1.57153 2.16180 2.49884 2.71025 3.27080 3.56069 3.63778 3.67618 3.77333 3.94087 4.00634 4.07077 4.10001 4.14005 4.22949 4.24647 4.27948 4.37958 4.52485 4.55062 4.65874 4.76972 4.79722 4.82835 4.88026 4.92349 4.94378 5.05261 5.15527 5.19802 5.21193 5.27353 5.32148 5.39729 5.43334 5.48580 5.59395 5.66621 5.85406 6.04943 6.26872 6.32135 6.41353 6.96596 7.11049 7.11767 7.81336 8.36380 9.19057 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.001681 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.475103 B =16656.132576 C =16860.629836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.254 4.254 3 C -0.004 4.004 4 C -0.227 4.227 5 C 0.127 3.873 6 N -0.483 5.483 7 C 0.073 3.927 8 C 0.494 3.506 9 O -0.582 6.582 10 N -0.707 5.707 11 C 0.134 3.866 12 C -0.077 4.077 13 C -0.124 4.124 14 C -0.171 4.171 15 C 0.205 3.795 16 N -0.615 5.615 17 C -0.259 4.259 18 H 0.070 0.930 19 C -0.057 4.057 20 N -0.941 5.941 21 Si 0.972 3.028 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.269 1.269 25 C 0.135 3.865 26 C -0.088 4.088 27 C 0.501 3.499 28 O -0.604 6.604 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.200 0.800 35 H 0.179 0.821 36 H 0.131 0.869 37 H 0.422 0.578 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.002 0.998 44 H 0.057 0.943 45 H 0.250 0.750 46 H 0.016 0.984 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 17.015 26.471 32.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.258 4.258 3 C -0.026 4.026 4 C -0.249 4.249 5 C 0.002 3.998 6 N -0.191 5.191 7 C -0.051 4.051 8 C 0.280 3.720 9 O -0.461 6.461 10 N -0.360 5.360 11 C 0.010 3.990 12 C -0.115 4.115 13 C -0.124 4.124 14 C -0.190 4.190 15 C 0.080 3.920 16 N -0.339 5.339 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.251 4.251 20 N -0.588 5.588 21 Si 0.800 3.200 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.194 1.194 25 C 0.010 3.990 26 C -0.127 4.127 27 C 0.306 3.694 28 O -0.491 6.491 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.181 0.819 33 H 0.199 0.801 34 H 0.217 0.783 35 H 0.197 0.803 36 H 0.149 0.851 37 H 0.260 0.740 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.020 0.980 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.787 16.786 25.738 31.960 hybrid contribution 0.646 -1.082 -0.938 1.571 sum -8.142 15.704 24.800 30.462 Atomic orbital electron populations 1.20399 0.88998 1.02465 1.02453 1.20942 0.98499 0.92315 1.14026 1.21760 0.94799 0.98171 0.87836 1.21147 0.94362 0.98589 1.10820 1.22687 1.00281 0.83969 0.92899 1.45078 1.07429 1.08019 1.58584 1.22047 1.01881 0.87203 0.94017 1.21338 0.77215 0.81274 0.92143 1.90763 1.52195 1.55701 1.47443 1.45778 1.57423 1.23310 1.09539 1.21163 0.99360 0.95980 0.82530 1.20799 1.01634 0.95385 0.93632 1.20569 0.95595 1.00027 0.96248 1.22834 0.97888 1.00763 0.97509 1.19382 0.93232 0.90813 0.88574 1.44428 1.01100 1.27837 1.60542 1.19535 1.03308 0.93011 1.23006 0.91235 1.25805 1.00272 0.99820 0.99237 1.70201 1.16874 1.25546 1.46150 0.85191 0.77234 0.79640 0.77966 1.21343 1.21693 1.19390 1.21174 0.85429 0.97749 0.94678 1.20743 0.97019 0.99511 0.95389 1.17400 0.81532 0.91424 0.79078 1.90888 1.67718 1.34398 1.56101 0.90857 0.89397 0.93992 0.81880 0.80118 0.78308 0.80342 0.85120 0.73991 0.93364 0.92760 0.89002 0.89105 0.86417 0.98005 0.92489 0.94094 0.96593 0.92404 0.91281 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.81 71.24 0.70 -0.89 16 2 C -0.25 -5.20 5.90 -19.73 -0.12 -5.32 16 3 C 0.00 -0.05 9.75 22.32 0.22 0.17 16 4 C -0.23 -2.02 10.01 22.08 0.22 -1.80 16 5 C 0.13 1.31 10.28 83.42 0.86 2.17 16 6 N -0.48 -8.50 2.07 -655.07 -1.36 -9.85 16 7 C 0.07 0.93 5.81 85.63 0.50 1.42 16 8 C 0.49 10.42 7.89 87.65 0.69 11.11 16 9 O -0.58 -18.94 16.43 -3.04 -0.05 -18.99 16 10 N -0.71 -11.74 5.56 -463.04 -2.57 -14.31 16 11 C 0.13 3.09 5.66 86.38 0.49 3.58 16 12 C -0.08 -1.65 5.32 29.85 0.16 -1.49 16 13 C -0.12 -3.99 5.11 -15.13 -0.08 -4.07 16 14 C -0.17 -6.46 9.47 27.11 0.26 -6.20 16 15 C 0.20 10.30 5.23 85.42 0.45 10.75 16 16 N -0.61 -32.18 3.01 -703.02 -2.11 -34.29 16 17 C -0.26 -14.63 9.71 84.03 0.82 -13.82 16 18 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 19 C -0.06 -3.24 5.01 84.86 0.42 -2.81 16 20 N -0.94 -56.74 11.08 21.65 0.24 -56.50 16 21 Si 0.97 45.56 29.58 68.60 2.03 47.59 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.14 5.85 6.59 86.32 0.57 6.42 16 26 C -0.09 -3.01 5.95 29.72 0.18 -2.83 16 27 C 0.50 12.90 7.39 84.82 0.63 13.53 16 28 O -0.60 -20.46 15.76 -5.52 -0.09 -20.55 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 31 H 0.04 1.01 7.62 -2.38 -0.02 0.99 16 32 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 34 H 0.20 0.33 8.04 -2.91 -0.02 0.31 16 35 H 0.18 0.13 8.02 -2.39 -0.02 0.11 16 36 H 0.13 1.71 7.39 -2.39 -0.02 1.70 16 37 H 0.42 3.42 8.47 -92.71 -0.79 2.64 16 38 H 0.05 1.35 8.11 -2.38 -0.02 1.33 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.62 7.78 -2.39 -0.02 1.60 16 41 H 0.09 1.64 8.11 -2.39 -0.02 1.62 16 42 H 0.12 3.77 7.73 -2.91 -0.02 3.74 16 43 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.06 3.19 6.41 -2.39 -0.02 3.17 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 48 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 49 H 0.08 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -89.44 404.54 3.21 -86.23 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.17 Total: 10.74 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.96 Total: 9.93 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -5.80 Total: -114.95 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.14 Total: -39.54 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -89.44 3.21 -86.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160125428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.510 kcal (2) G-P(sol) polarization free energy of solvation -89.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds