Wall clock time and date at job start Wed Apr 1 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 119.99731 * 2 1 4 4 O 1.42893 * 109.47601 * 134.99911 * 3 2 1 5 5 C 1.35652 * 117.00540 * 179.97438 * 4 3 2 6 6 C 1.39346 * 120.53619 * 0.02562 * 5 4 3 7 7 C 1.38304 * 118.43474 * 179.97438 * 6 5 4 8 8 C 1.38763 * 119.45043 * 0.02562 * 7 6 5 9 9 N 1.31374 * 121.06192 * 359.97294 * 8 7 6 10 10 C 1.32858 * 121.70221 * 359.74958 * 9 8 7 11 11 C 1.47834 * 119.78734 * 180.29147 * 10 9 8 12 12 O 1.21555 * 119.99572 * 175.30572 * 11 10 9 13 13 N 1.34776 * 119.99924 * 355.30614 * 11 10 9 14 14 C 1.48117 * 127.03197 * 185.01420 * 13 11 10 15 15 C 1.54599 * 103.41866 * 219.28362 * 14 13 11 16 16 C 1.54613 * 102.91395 * 322.86504 * 15 14 13 17 17 C 1.52998 * 110.41482 * 262.76496 * 16 15 14 18 18 C 1.52998 * 110.32617 * 140.59209 * 16 15 14 19 19 N 1.46506 * 109.46978 * 182.92665 * 18 16 15 20 20 C 1.36937 * 119.99755 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00266 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99799 * 180.02562 * 20 19 18 23 23 N 1.31616 * 119.99824 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47247 * 59.99313 * 24 22 20 26 26 H 1.48497 * 109.47257 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46770 * 299.99681 * 24 22 20 28 28 C 1.47488 * 127.03333 * 5.32166 * 13 11 10 29 29 H 1.08008 * 119.99662 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00641 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.00509 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47577 * 14.99532 * 3 2 1 33 33 H 1.09003 * 109.47107 * 254.99973 * 3 2 1 34 34 H 1.07997 * 120.77915 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.27157 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.46871 * 180.02562 * 8 7 6 37 37 H 1.08999 * 110.66123 * 337.76078 * 14 13 11 38 38 H 1.08994 * 110.66356 * 100.88082 * 14 13 11 39 39 H 1.09001 * 110.82987 * 204.44270 * 15 14 13 40 40 H 1.08998 * 110.73247 * 81.23977 * 15 14 13 41 41 H 1.09003 * 109.47250 * 177.12488 * 17 16 15 42 42 H 1.09001 * 109.47269 * 297.12724 * 17 16 15 43 43 H 1.08998 * 109.47103 * 57.12483 * 17 16 15 44 44 H 1.09000 * 109.47436 * 302.92667 * 18 16 15 45 45 H 1.09000 * 109.47355 * 62.92867 * 18 16 15 46 46 H 0.97002 * 119.99708 * 0.02562 * 19 18 16 47 47 H 0.97000 * 119.99993 * 180.02562 * 23 22 20 48 48 H 1.08993 * 109.91465 * 273.87806 * 28 13 11 49 49 H 1.08997 * 109.91173 * 35.16497 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1265 1.2415 0.9526 5 6 3.9081 2.3431 1.0779 6 6 3.6658 3.4750 0.3022 7 6 4.4892 4.5741 0.4658 8 6 5.5242 4.5199 1.3885 9 7 5.7340 3.4417 2.1092 10 6 4.9669 2.3633 1.9918 11 6 5.2372 1.1752 2.8289 12 8 4.4879 0.2190 2.7869 13 7 6.3145 1.1522 3.6385 14 6 6.7891 0.0146 4.4597 15 6 7.2490 0.6876 5.7733 16 6 7.8775 2.0118 5.2815 17 6 9.3969 1.8720 5.1687 18 6 7.5191 3.1556 6.2324 19 7 8.0644 4.4120 5.7124 20 6 7.8690 5.5798 6.4002 21 1 7.3133 5.5747 7.3262 22 6 8.3852 6.7704 5.9073 23 7 9.0630 6.7766 4.7790 24 14 8.1193 8.3634 6.8459 25 1 8.7180 8.2461 8.1999 26 1 8.7657 9.4826 6.1146 27 1 6.6633 8.6278 6.9697 28 6 7.2582 2.2567 3.8928 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5401 0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3854 2.1162 0.2659 33 1 2.4754 1.4868 -0.9927 34 1 2.8536 3.4939 -0.4094 35 1 4.3279 5.4672 -0.1198 36 1 6.1671 5.3781 1.5167 37 1 5.9768 -0.6865 4.6516 38 1 7.6255 -0.4879 3.9740 39 1 7.9915 0.0742 6.2838 40 1 6.3977 0.8831 6.4253 41 1 9.8184 2.7960 4.7728 42 1 9.8177 1.6736 6.1544 43 1 9.6370 1.0467 4.4984 44 1 6.4350 3.2356 6.3123 45 1 7.9422 2.9558 7.2169 46 1 8.5639 4.4166 4.8809 47 1 9.4240 7.6085 4.4347 48 1 8.0398 2.2595 3.1331 49 1 6.7267 3.2082 3.8860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270823858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:55 Heat of formation + Delta-G solvation = 15.795930 kcal Electronic energy + Delta-G solvation = -30903.072943 eV Core-core repulsion = 26832.222604 eV Total energy + Delta-G solvation = -4070.850339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.97948 -39.57892 -38.38175 -37.66465 -34.60821 -34.36888 -32.83055 -32.21502 -30.73420 -30.24307 -28.98645 -26.97612 -26.20459 -25.61958 -24.58754 -23.23385 -22.88052 -21.77356 -20.40265 -19.67632 -18.73046 -18.17782 -17.50524 -16.96428 -16.84392 -16.34300 -15.79461 -15.44989 -15.03012 -14.90075 -14.63930 -14.30326 -14.18348 -13.81757 -13.55970 -13.38552 -13.23871 -13.16444 -12.94127 -12.65196 -12.43989 -12.17219 -12.03678 -11.78758 -11.70057 -11.62520 -11.34697 -11.30461 -10.92876 -10.78353 -10.49555 -10.36074 -10.19843 -9.96056 -9.93573 -9.85195 -9.82402 -9.53759 -9.21661 -8.80158 -8.56964 -8.22911 -6.83574 -5.70397 -2.97450 0.68107 1.19027 1.73318 2.93980 3.03304 3.18638 3.46910 3.51277 3.52292 3.91885 4.26269 4.40792 4.48754 4.61965 4.63393 4.71769 4.83799 4.90618 4.95416 4.99600 5.08586 5.20233 5.23541 5.37894 5.49421 5.56472 5.58628 5.65166 5.74862 5.77218 5.90679 5.96232 6.04033 6.16954 6.19661 6.22689 6.23493 6.27826 6.32508 6.39017 6.51780 6.54485 6.75145 6.83168 6.93663 6.99727 7.10874 7.75609 7.77682 7.87441 8.43305 8.48788 9.60281 10.18913 10.54893 11.52264 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.003263 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.357643 B = 8579.018790 C =10295.464424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.148 4.148 3 C 0.078 3.922 4 O -0.269 6.269 5 C 0.132 3.868 6 C -0.180 4.180 7 C -0.108 4.108 8 C 0.068 3.932 9 N -0.401 5.401 10 C 0.047 3.953 11 C 0.590 3.410 12 O -0.529 6.529 13 N -0.603 5.603 14 C 0.106 3.894 15 C -0.124 4.124 16 C -0.084 4.084 17 C -0.131 4.131 18 C 0.168 3.832 19 N -0.728 5.728 20 C -0.234 4.234 21 H 0.067 0.933 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.288 1.288 28 C 0.114 3.886 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.172 0.828 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.386 0.614 47 H 0.254 0.746 48 H 0.062 0.938 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 -11.814 -11.638 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C 0.003 3.997 4 O -0.180 6.180 5 C 0.081 3.919 6 C -0.206 4.206 7 C -0.128 4.128 8 C -0.092 4.092 9 N -0.112 5.112 10 C -0.091 4.091 11 C 0.378 3.622 12 O -0.405 6.405 13 N -0.336 5.336 14 C -0.016 4.016 15 C -0.163 4.163 16 C -0.085 4.085 17 C -0.188 4.188 18 C 0.040 3.960 19 N -0.372 5.372 20 C -0.365 4.365 21 H 0.085 0.915 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.215 1.215 28 C -0.009 4.009 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.189 0.811 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.220 0.780 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.920 -12.463 -10.900 19.834 hybrid contribution -0.682 1.372 -0.566 1.633 sum -11.602 -11.090 -11.466 19.725 Atomic orbital electron populations 1.23851 0.95356 1.02493 0.99467 1.22629 0.95576 0.97795 1.00621 1.21951 0.88255 0.97252 0.92268 1.86418 1.40815 1.33628 1.57119 1.19956 0.90906 0.86938 0.94087 1.21686 1.03004 0.93512 1.02418 1.22256 0.94371 0.98376 0.97808 1.22986 0.97079 0.96563 0.92619 1.68012 1.24114 0.98697 1.20344 1.20650 0.94467 0.95233 0.98797 1.17198 0.79986 0.85745 0.79309 1.90798 1.46653 1.35971 1.67112 1.48592 1.26378 1.15313 1.43272 1.22381 0.98922 0.89541 0.90739 1.22740 1.00914 0.96215 0.96447 1.21747 0.95935 0.95306 0.95530 1.21792 0.93810 1.01864 1.01358 1.20681 0.95938 0.85343 0.93997 1.42364 1.65261 1.01915 1.27690 1.19166 1.28071 0.85729 1.03540 0.91501 1.24668 1.01074 0.97513 0.97618 1.69645 1.41261 1.26139 1.21103 0.86327 0.77496 0.83695 0.79012 1.21438 1.21801 1.21460 1.22596 0.91880 0.91694 0.94703 0.87416 0.88334 0.86023 0.91423 0.91005 0.83973 0.83976 0.81102 0.90152 0.91235 0.90144 0.90789 0.91202 0.92629 0.93571 0.96440 0.96179 0.77982 0.93645 0.91975 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 14.31 29.02 0.42 -0.86 16 2 C -0.15 -1.36 9.89 -36.02 -0.36 -1.71 16 3 C 0.08 0.76 5.17 36.01 0.19 0.94 16 4 O -0.27 -3.89 8.20 -40.55 -0.33 -4.23 16 5 C 0.13 1.92 6.71 -38.55 -0.26 1.66 16 6 C -0.18 -2.00 9.13 -39.15 -0.36 -2.35 16 7 C -0.11 -1.18 10.10 -39.36 -0.40 -1.58 16 8 C 0.07 0.96 11.17 -17.55 -0.20 0.76 16 9 N -0.40 -6.76 6.79 -9.71 -0.07 -6.83 16 10 C 0.05 0.81 6.74 -82.88 -0.56 0.25 16 11 C 0.59 10.86 7.86 -12.33 -0.10 10.77 16 12 O -0.53 -10.60 15.35 -16.58 -0.25 -10.86 16 13 N -0.60 -10.26 3.29 -171.09 -0.56 -10.82 16 14 C 0.11 1.51 7.09 -2.31 -0.02 1.50 16 15 C -0.12 -1.72 6.16 -25.04 -0.15 -1.88 16 16 C -0.08 -1.39 0.68 -153.14 -0.10 -1.50 16 17 C -0.13 -2.04 8.04 37.16 0.30 -1.74 16 18 C 0.17 3.43 4.90 -4.04 -0.02 3.41 16 19 N -0.73 -17.97 4.88 -59.91 -0.29 -18.26 16 20 C -0.23 -6.46 9.99 -15.06 -0.15 -6.61 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 24 Si 0.90 22.23 29.55 -169.99 -5.02 17.21 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.11 1.99 4.78 -2.98 -0.01 1.98 16 29 H 0.11 0.64 8.06 -52.48 -0.42 0.22 16 30 H 0.10 0.60 7.90 -52.49 -0.41 0.19 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 32 H 0.07 0.55 7.42 -51.93 -0.39 0.17 16 33 H 0.07 0.56 7.70 -51.93 -0.40 0.16 16 34 H 0.14 1.10 6.46 -52.49 -0.34 0.76 16 35 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 36 H 0.17 2.28 8.06 -52.49 -0.42 1.85 16 37 H 0.08 1.13 7.81 -51.93 -0.41 0.73 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 40 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 41 H 0.07 1.25 6.99 -51.93 -0.36 0.89 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.39 9.89 6.27 -40.82 -0.26 9.63 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 48 H 0.06 1.09 7.68 -51.93 -0.40 0.69 16 49 H 0.12 2.36 5.35 -51.93 -0.28 2.08 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -33.51 399.01 -9.08 -42.59 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.41 Total: 9.19 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.88 Total: 2.58 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.20 Total: -62.49 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.59 Total: -15.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.51 -9.08 -42.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270823858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.387 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds