Wall clock time and date at job start Wed Apr 1 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 119.99731 * 2 1 4 4 O 1.42893 * 109.47601 * 134.99911 * 3 2 1 5 5 C 1.35652 * 117.00540 * 179.97438 * 4 3 2 6 6 C 1.39346 * 120.53619 * 0.02562 * 5 4 3 7 7 C 1.38304 * 118.43474 * 179.97438 * 6 5 4 8 8 C 1.38763 * 119.45043 * 0.02562 * 7 6 5 9 9 N 1.31374 * 121.06192 * 359.97294 * 8 7 6 10 10 C 1.32858 * 121.70221 * 359.74958 * 9 8 7 11 11 C 1.47834 * 119.78734 * 180.29147 * 10 9 8 12 12 O 1.21555 * 119.99572 * 175.30572 * 11 10 9 13 13 N 1.34776 * 119.99924 * 355.30614 * 11 10 9 14 14 C 1.48117 * 127.03197 * 185.01420 * 13 11 10 15 15 C 1.54599 * 103.41866 * 219.28362 * 14 13 11 16 16 C 1.54613 * 102.91395 * 322.86504 * 15 14 13 17 17 C 1.52998 * 110.41482 * 262.76496 * 16 15 14 18 18 C 1.52998 * 110.32617 * 140.59209 * 16 15 14 19 19 N 1.46506 * 109.46978 * 182.92665 * 18 16 15 20 20 C 1.36937 * 119.99755 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00266 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99799 * 180.02562 * 20 19 18 23 23 N 1.31616 * 119.99824 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47247 * 59.99313 * 24 22 20 26 26 H 1.48497 * 109.47257 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46770 * 299.99681 * 24 22 20 28 28 C 1.47488 * 127.03333 * 5.32166 * 13 11 10 29 29 H 1.08008 * 119.99662 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00641 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.00509 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47577 * 14.99532 * 3 2 1 33 33 H 1.09003 * 109.47107 * 254.99973 * 3 2 1 34 34 H 1.07997 * 120.77915 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.27157 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.46871 * 180.02562 * 8 7 6 37 37 H 1.08999 * 110.66123 * 337.76078 * 14 13 11 38 38 H 1.08994 * 110.66356 * 100.88082 * 14 13 11 39 39 H 1.09001 * 110.82987 * 204.44270 * 15 14 13 40 40 H 1.08998 * 110.73247 * 81.23977 * 15 14 13 41 41 H 1.09003 * 109.47250 * 177.12488 * 17 16 15 42 42 H 1.09001 * 109.47269 * 297.12724 * 17 16 15 43 43 H 1.08998 * 109.47103 * 57.12483 * 17 16 15 44 44 H 1.09000 * 109.47436 * 302.92667 * 18 16 15 45 45 H 1.09000 * 109.47355 * 62.92867 * 18 16 15 46 46 H 0.97002 * 119.99708 * 0.02562 * 19 18 16 47 47 H 0.97000 * 119.99993 * 180.02562 * 23 22 20 48 48 H 1.08993 * 109.91465 * 273.87806 * 28 13 11 49 49 H 1.08997 * 109.91173 * 35.16497 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1265 1.2415 0.9526 5 6 3.9081 2.3431 1.0779 6 6 3.6658 3.4750 0.3022 7 6 4.4892 4.5741 0.4658 8 6 5.5242 4.5199 1.3885 9 7 5.7340 3.4417 2.1092 10 6 4.9669 2.3633 1.9918 11 6 5.2372 1.1752 2.8289 12 8 4.4879 0.2190 2.7869 13 7 6.3145 1.1522 3.6385 14 6 6.7891 0.0146 4.4597 15 6 7.2490 0.6876 5.7733 16 6 7.8775 2.0118 5.2815 17 6 9.3969 1.8720 5.1687 18 6 7.5191 3.1556 6.2324 19 7 8.0644 4.4120 5.7124 20 6 7.8690 5.5798 6.4002 21 1 7.3133 5.5747 7.3262 22 6 8.3852 6.7704 5.9073 23 7 9.0630 6.7766 4.7790 24 14 8.1193 8.3634 6.8459 25 1 8.7180 8.2461 8.1999 26 1 8.7657 9.4826 6.1146 27 1 6.6633 8.6278 6.9697 28 6 7.2582 2.2567 3.8928 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5401 0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3854 2.1162 0.2659 33 1 2.4754 1.4868 -0.9927 34 1 2.8536 3.4939 -0.4094 35 1 4.3279 5.4672 -0.1198 36 1 6.1671 5.3781 1.5167 37 1 5.9768 -0.6865 4.6516 38 1 7.6255 -0.4879 3.9740 39 1 7.9915 0.0742 6.2838 40 1 6.3977 0.8831 6.4253 41 1 9.8184 2.7960 4.7728 42 1 9.8177 1.6736 6.1544 43 1 9.6370 1.0467 4.4984 44 1 6.4350 3.2356 6.3123 45 1 7.9422 2.9558 7.2169 46 1 8.5639 4.4166 4.8809 47 1 9.4240 7.6085 4.4347 48 1 8.0398 2.2595 3.1331 49 1 6.7267 3.2082 3.8860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270823858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:54 Heat of formation + Delta-G solvation = -3.990561 kcal Electronic energy + Delta-G solvation = -30903.930950 eV Core-core repulsion = 26832.222604 eV Total energy + Delta-G solvation = -4071.708345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.07194 -40.82854 -39.38413 -39.05887 -36.34001 -35.09814 -34.31439 -33.47940 -32.19692 -31.58212 -30.32174 -27.73428 -27.64857 -27.17368 -25.95796 -24.73046 -23.96474 -23.19785 -21.26792 -20.72110 -20.16615 -19.16679 -19.10148 -18.47133 -17.93791 -17.30508 -16.98264 -16.73857 -16.54287 -16.00779 -15.89344 -15.63678 -15.31462 -15.19597 -15.08724 -14.80064 -14.50263 -14.26809 -14.05742 -13.91065 -13.69202 -13.52370 -13.15583 -13.08350 -12.95500 -12.81913 -12.76055 -12.61478 -12.54464 -12.15642 -12.00580 -11.94777 -11.77253 -11.43540 -11.38491 -11.17717 -10.88681 -10.87037 -10.54360 -10.31146 -9.77506 -9.43094 -8.89491 -7.86281 -5.13521 -0.37998 0.19315 1.08215 1.50067 1.52072 1.58083 1.69391 1.91330 2.23064 2.60893 2.78819 3.10693 3.45053 3.50241 3.58754 3.63366 3.75209 3.87553 3.89346 3.98218 4.05336 4.13124 4.24894 4.28702 4.34434 4.41177 4.42514 4.48484 4.48786 4.75269 4.80688 4.85154 4.90808 4.92643 4.95359 4.97982 5.02445 5.08963 5.18793 5.22695 5.35353 5.35647 5.51424 5.56180 5.59206 5.61162 5.65307 6.18193 6.35145 6.46224 6.73849 7.12842 7.42651 8.17797 8.44688 9.36371 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.003263 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.357643 B = 8579.018790 C =10295.464424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.178 4.178 3 C 0.071 3.929 4 O -0.297 6.297 5 C 0.129 3.871 6 C -0.168 4.168 7 C -0.084 4.084 8 C 0.046 3.954 9 N -0.431 5.431 10 C 0.004 3.996 11 C 0.581 3.419 12 O -0.557 6.557 13 N -0.607 5.607 14 C 0.104 3.896 15 C -0.112 4.112 16 C -0.078 4.078 17 C -0.123 4.123 18 C 0.170 3.830 19 N -0.734 5.734 20 C -0.244 4.244 21 H 0.067 0.933 22 C -0.067 4.067 23 N -0.961 5.961 24 Si 0.966 3.034 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.283 1.283 28 C 0.125 3.875 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.185 0.815 35 H 0.186 0.814 36 H 0.169 0.831 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.002 0.998 45 H 0.025 0.975 46 H 0.379 0.621 47 H 0.251 0.749 48 H 0.057 0.943 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.337 -11.735 -12.352 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.197 4.197 3 C -0.003 4.003 4 O -0.208 6.208 5 C 0.078 3.922 6 C -0.194 4.194 7 C -0.104 4.104 8 C -0.116 4.116 9 N -0.143 5.143 10 C -0.133 4.133 11 C 0.370 3.630 12 O -0.436 6.436 13 N -0.339 5.339 14 C -0.018 4.018 15 C -0.151 4.151 16 C -0.079 4.079 17 C -0.181 4.181 18 C 0.044 3.956 19 N -0.377 5.377 20 C -0.376 4.376 21 H 0.085 0.915 22 C -0.260 4.260 23 N -0.611 5.611 24 Si 0.796 3.204 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.209 1.209 28 C 0.003 3.997 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.202 0.798 35 H 0.203 0.797 36 H 0.187 0.813 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.020 0.980 45 H 0.043 0.957 46 H 0.212 0.788 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.199 -12.423 -11.584 20.913 hybrid contribution -0.403 1.336 -0.398 1.451 sum -12.602 -11.087 -11.982 20.623 Atomic orbital electron populations 1.24103 0.94677 1.03893 0.96533 1.22633 0.96339 0.97310 1.03375 1.22276 0.87574 0.98143 0.92346 1.86387 1.41830 1.34058 1.58548 1.20110 0.90255 0.88038 0.93839 1.22128 1.03568 0.91869 1.01862 1.22645 0.92084 0.99623 0.96030 1.23210 0.98644 0.95978 0.93769 1.67865 1.25201 0.99509 1.21701 1.20556 0.96712 0.95186 1.00861 1.17604 0.79865 0.86112 0.79447 1.90752 1.47540 1.37067 1.68248 1.48698 1.26005 1.15877 1.43289 1.22583 0.99614 0.88934 0.90638 1.22712 1.01301 0.94753 0.96319 1.21659 0.96930 0.95237 0.94099 1.21718 0.92498 1.01408 1.02428 1.20755 0.94667 0.85161 0.95063 1.42475 1.65213 1.02728 1.27312 1.19499 1.27489 0.86994 1.03589 0.91519 1.25398 1.01445 1.00445 0.98662 1.69793 1.42328 1.26546 1.22446 0.85332 0.77400 0.79856 0.77838 1.20810 1.21949 1.20942 1.22330 0.91405 0.90850 0.95147 0.86190 0.86709 0.87404 0.89551 0.88995 0.79820 0.79655 0.81346 0.90068 0.89139 0.86861 0.91358 0.94084 0.91546 0.90946 0.97979 0.95667 0.78802 0.94044 0.92444 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 14.31 67.79 0.97 -0.98 16 2 C -0.18 -3.12 9.89 25.65 0.25 -2.87 16 3 C 0.07 1.26 5.17 71.24 0.37 1.63 16 4 O -0.30 -8.60 8.20 -68.73 -0.56 -9.16 16 5 C 0.13 3.72 6.71 22.94 0.15 3.88 16 6 C -0.17 -3.33 9.13 22.55 0.21 -3.13 16 7 C -0.08 -1.65 10.10 22.41 0.23 -1.43 16 8 C 0.05 1.30 11.17 84.89 0.95 2.25 16 9 N -0.43 -15.28 6.79 -184.63 -1.25 -16.54 16 10 C 0.00 0.14 6.74 41.93 0.28 0.42 16 11 C 0.58 22.39 7.86 86.78 0.68 23.07 16 12 O -0.56 -23.30 15.35 17.04 0.26 -23.03 16 13 N -0.61 -21.26 3.29 -813.50 -2.68 -23.94 16 14 C 0.10 2.88 7.09 86.61 0.61 3.49 16 15 C -0.11 -2.96 6.16 31.69 0.20 -2.77 16 16 C -0.08 -2.58 0.68 -51.29 -0.03 -2.62 16 17 C -0.12 -3.73 8.04 71.98 0.58 -3.15 16 18 C 0.17 7.07 4.90 86.38 0.42 7.49 16 19 N -0.73 -37.23 4.88 -343.44 -1.68 -38.91 16 20 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 21 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 23 N -0.96 -57.33 13.06 21.65 0.28 -57.05 16 24 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 28 C 0.13 4.56 4.78 86.53 0.41 4.98 16 29 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 30 H 0.11 1.06 7.90 -2.91 -0.02 1.04 16 31 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.09 1.18 7.42 -2.39 -0.02 1.16 16 33 H 0.09 1.21 7.70 -2.39 -0.02 1.19 16 34 H 0.18 2.02 6.46 -2.91 -0.02 2.00 16 35 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.17 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.08 2.26 7.81 -2.39 -0.02 2.24 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.11 2.28 7.86 -2.39 -0.02 2.26 16 40 H 0.07 1.89 7.86 -2.39 -0.02 1.88 16 41 H 0.04 1.48 6.99 -2.39 -0.02 1.47 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.00 0.10 8.13 -2.39 -0.02 0.08 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.38 20.17 6.27 -92.71 -0.58 19.59 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 48 H 0.06 2.10 7.68 -2.39 -0.02 2.08 16 49 H 0.09 3.77 5.35 -2.39 -0.01 3.76 16 Total: -1.00 -76.08 399.01 4.36 -71.72 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.37 Total: 34.79 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 7.59 Total: 14.10 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -5.33 Total: -136.44 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.30 Total: -32.20 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -76.08 4.36 -71.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270823858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.726 kcal (2) G-P(sol) polarization free energy of solvation -76.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds