Wall clock time and date at job start Wed Apr 1 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34653 * 125.80483 * 2 1 4 4 H 0.97003 * 124.85205 * 0.02562 * 3 2 1 5 5 C 1.36447 * 110.30196 * 180.30312 * 3 2 1 6 6 C 1.34485 * 108.85423 * 359.72644 * 5 3 2 7 7 C 1.36774 * 125.80125 * 179.83203 * 2 1 3 8 8 C 1.47267 * 126.93841 * 359.97438 * 7 2 1 9 9 O 1.21624 * 119.99935 * 352.99376 * 8 7 2 10 10 N 1.34773 * 119.99520 * 172.99522 * 8 7 2 11 11 C 1.47657 * 125.81901 * 354.44660 * 10 8 7 12 12 C 1.54971 * 104.85805 * 204.00561 * 11 10 8 13 13 C 1.55327 * 101.66881 * 323.39666 * 12 11 10 14 14 C 1.46237 * 125.81350 * 174.44405 * 10 8 7 15 15 C 1.53899 * 110.90543 * 299.83240 * 14 10 8 16 16 C 1.54638 * 101.58811 * 144.74761 * 15 14 10 17 17 N 1.46848 * 105.50811 * 335.22234 * 16 15 14 18 18 C 1.46501 * 124.36930 * 196.84065 * 17 16 15 19 19 C 1.52995 * 109.47104 * 90.00150 * 18 17 16 20 20 C 1.50705 * 109.47442 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99479 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00188 * 180.27216 * 20 19 18 23 23 N 1.31518 * 119.99843 * 179.72181 * 22 20 19 24 24 Si 1.86801 * 120.00220 * 359.72662 * 22 20 19 25 25 H 1.48495 * 109.47269 * 89.99783 * 24 22 20 26 26 H 1.48497 * 109.47124 * 209.99862 * 24 22 20 27 27 H 1.48498 * 109.46788 * 329.99689 * 24 22 20 28 28 C 1.34658 * 111.26225 * 17.10486 * 17 16 15 29 29 O 1.21282 * 125.07198 * 178.90415 * 28 17 16 30 30 H 1.08998 * 109.46619 * 270.17014 * 1 2 3 31 31 H 1.09000 * 109.47145 * 30.16450 * 1 2 3 32 32 H 1.08995 * 109.46946 * 150.16813 * 1 2 3 33 33 H 1.07995 * 125.57356 * 179.70587 * 5 3 2 34 34 H 1.07995 * 126.83453 * 180.02562 * 6 5 3 35 35 H 1.09010 * 110.35610 * 322.84918 * 11 10 8 36 36 H 1.08997 * 110.36399 * 85.04464 * 11 10 8 37 37 H 1.09002 * 110.98951 * 81.49374 * 12 11 10 38 38 H 1.08998 * 110.98897 * 205.26646 * 12 11 10 39 39 H 1.08995 * 110.76367 * 276.57722 * 13 12 11 40 40 H 1.09005 * 110.75995 * 153.19336 * 13 12 11 41 41 H 1.08996 * 111.00198 * 26.67131 * 15 14 10 42 42 H 1.08996 * 110.99936 * 262.82286 * 15 14 10 43 43 H 1.09005 * 110.24088 * 216.21680 * 16 15 14 44 44 H 1.09000 * 110.24399 * 94.23354 * 16 15 14 45 45 H 1.08995 * 109.47275 * 330.00049 * 18 17 16 46 46 H 1.09003 * 109.46917 * 209.99972 * 18 17 16 47 47 H 1.09002 * 109.47792 * 59.99886 * 19 18 17 48 48 H 1.09003 * 109.47088 * 299.99717 * 19 18 17 49 49 H 0.97001 * 119.99948 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7274 -0.0068 6 6 3.6883 -0.6152 -0.0052 7 6 2.3071 -1.1093 0.0033 8 6 1.8702 -2.5157 0.0079 9 8 0.6914 -2.7858 0.1377 10 7 2.7765 -3.5033 -0.1316 11 6 4.2150 -3.3228 -0.4116 12 6 4.6610 -4.6516 -1.0727 13 6 3.8153 -5.6919 -0.2884 14 6 2.5029 -4.9363 -0.0314 15 6 1.9436 -5.2928 1.3574 16 6 0.9418 -6.4182 1.0093 17 7 0.5642 -6.1885 -0.3911 18 6 -0.6091 -6.7799 -1.0390 19 6 -1.8112 -5.8498 -0.8642 20 6 -3.0184 -6.4584 -1.5301 21 1 -2.9362 -7.4130 -2.0285 22 6 -4.2261 -5.7938 -1.5083 23 7 -5.2783 -6.3224 -2.0942 24 14 -4.3681 -4.1424 -0.6468 25 1 -4.0688 -3.0536 -1.6112 26 1 -5.7474 -3.9743 -0.1230 27 1 -3.4009 -4.0865 0.4786 28 6 1.4388 -5.3686 -1.0045 29 8 1.3772 -5.0279 -2.1668 30 1 -0.3632 0.0031 1.0277 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8915 -0.5112 33 1 4.4498 1.4059 -0.0128 34 1 4.5890 -1.2110 -0.0089 35 1 4.3662 -2.4887 -1.0970 36 1 4.7638 -3.1553 0.5151 37 1 4.4095 -4.6637 -2.1333 38 1 5.7272 -4.8228 -0.9245 39 1 4.3005 -5.9546 0.6516 40 1 3.6373 -6.5806 -0.8941 41 1 1.4330 -4.4395 1.8037 42 1 2.7324 -5.6610 2.0133 43 1 0.0638 -6.3536 1.6520 44 1 1.4175 -7.3930 1.1165 45 1 -0.8276 -7.7456 -0.5833 46 1 -0.4071 -6.9168 -2.1013 47 1 -1.5928 -4.8840 -1.3199 48 1 -2.0132 -5.7129 0.1982 49 1 -6.1279 -5.8546 -2.0792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271351753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:18 Heat of formation + Delta-G solvation = -37.287225 kcal Electronic energy + Delta-G solvation = -32029.764519 eV Core-core repulsion = 27956.612322 eV Total energy + Delta-G solvation = -4073.152197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.55916 -41.92765 -39.73975 -38.17209 -37.48334 -35.63793 -33.93236 -32.96571 -32.49083 -31.73577 -30.99838 -28.92099 -27.50258 -27.09530 -25.49194 -24.03954 -23.31557 -22.89714 -21.89563 -21.57295 -20.37407 -19.36295 -19.13323 -18.55290 -17.59145 -17.27209 -17.00135 -16.64506 -16.33738 -16.29816 -15.77786 -15.56277 -15.21866 -14.96703 -14.84790 -14.79280 -14.55886 -14.37288 -14.25128 -14.05652 -13.76569 -13.72828 -13.60537 -13.53769 -13.43721 -13.11799 -12.98675 -12.73868 -12.56420 -12.35891 -12.16970 -12.02825 -11.90510 -11.87392 -11.62227 -11.57614 -10.93296 -10.88851 -10.86499 -9.84031 -9.61859 -9.57021 -9.09300 -8.41952 -6.45034 0.70014 1.20127 1.22892 1.37941 1.40929 1.56637 2.01166 2.16213 2.24300 2.43070 2.51502 2.92639 3.31858 3.41224 3.54336 3.78980 3.85613 3.92863 4.06360 4.12629 4.19664 4.20471 4.26647 4.34359 4.44213 4.53638 4.55822 4.62414 4.63849 4.73990 4.74966 4.82349 4.85201 4.90396 4.96565 4.99533 5.00879 5.08644 5.14028 5.19562 5.21495 5.33731 5.42884 5.46691 5.69710 5.78707 5.97576 6.13301 6.24857 6.55426 6.59781 6.67179 7.17048 7.21569 7.29833 8.74208 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.004423 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.861712 B = 6329.159640 C = 8441.991279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.088 3.912 3 N -0.537 5.537 4 H 0.432 0.568 5 C 0.002 3.998 6 C -0.187 4.187 7 C -0.262 4.262 8 C 0.587 3.413 9 O -0.587 6.587 10 N -0.597 5.597 11 C 0.093 3.907 12 C -0.129 4.129 13 C -0.103 4.103 14 C 0.132 3.868 15 C -0.123 4.123 16 C 0.096 3.904 17 N -0.619 5.619 18 C 0.149 3.851 19 C -0.006 4.006 20 C -0.530 4.530 21 H 0.048 0.952 22 C 0.021 3.979 23 N -0.938 5.938 24 Si 0.939 3.061 25 H -0.282 1.282 26 H -0.264 1.264 27 H -0.264 1.264 28 C 0.505 3.495 29 O -0.583 6.583 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.215 0.785 34 H 0.177 0.823 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.050 0.950 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.050 0.950 47 H -0.018 1.018 48 H 0.017 0.983 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.141 13.151 12.272 35.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 N -0.134 5.134 4 H 0.272 0.728 5 C -0.126 4.126 6 C -0.210 4.210 7 C -0.272 4.272 8 C 0.380 3.620 9 O -0.469 6.469 10 N -0.330 5.330 11 C -0.027 4.027 12 C -0.167 4.167 13 C -0.141 4.141 14 C 0.042 3.958 15 C -0.162 4.162 16 C -0.026 4.026 17 N -0.351 5.351 18 C 0.027 3.973 19 C -0.045 4.045 20 C -0.569 4.569 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.578 5.578 24 Si 0.764 3.236 25 H -0.208 1.208 26 H -0.189 1.189 27 H -0.189 1.189 28 C 0.293 3.707 29 O -0.463 6.463 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.232 0.768 34 H 0.194 0.806 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.163 0.837 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.114 0.886 46 H 0.069 0.931 47 H 0.000 1.000 48 H 0.036 0.964 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 29.174 13.377 11.693 34.158 hybrid contribution -1.693 0.897 -0.485 1.976 sum 27.481 14.274 11.208 32.933 Atomic orbital electron populations 1.20430 0.88017 1.03226 1.03358 1.20254 0.93614 0.86829 1.02400 1.41595 1.06306 1.08309 1.57193 0.72817 1.22486 0.86027 0.96512 1.07566 1.22716 0.94893 0.94714 1.08704 1.20140 0.95994 0.90288 1.20804 1.17728 0.83920 0.85196 0.75170 1.90824 1.18658 1.84698 1.52685 1.48041 1.10646 1.03319 1.70952 1.23050 0.78500 0.99420 1.01761 1.22927 1.02231 0.92800 0.98702 1.22663 0.90081 0.97387 1.03948 1.21309 0.96449 0.83452 0.94576 1.23009 0.99748 0.98150 0.95249 1.22429 0.99304 1.00501 0.80336 1.48596 1.25015 1.47712 1.13754 1.21147 0.83031 0.96451 0.96660 1.19636 0.94019 0.94814 0.96007 1.21266 0.93904 1.06520 1.35180 0.93333 1.25726 0.95415 1.01001 0.95620 1.70009 1.01570 1.40720 1.45490 0.85830 0.77877 0.80155 0.79734 1.20785 1.18875 1.18868 1.21574 0.83927 0.77460 0.87782 1.90610 1.77196 1.58766 1.19746 0.90156 0.89150 0.92866 0.76792 0.80574 0.89494 0.87152 0.93145 0.84886 0.84569 0.90610 0.92147 0.83680 0.90975 0.86849 0.88572 0.93094 0.99975 0.96436 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.56 9.81 71.24 0.70 -1.86 16 2 C 0.09 2.25 7.17 41.78 0.30 2.55 16 3 N -0.54 -8.04 5.90 -182.72 -1.08 -9.12 16 4 H 0.43 3.34 8.96 -92.71 -0.83 2.51 16 5 C 0.00 0.02 11.89 83.12 0.99 1.01 16 6 C -0.19 -3.29 9.27 23.62 0.22 -3.07 16 7 C -0.26 -7.45 6.18 -19.04 -0.12 -7.57 16 8 C 0.59 21.26 7.19 86.62 0.62 21.88 16 9 O -0.59 -27.45 13.58 -4.11 -0.06 -27.51 16 10 N -0.60 -17.19 2.90 -774.19 -2.25 -19.44 16 11 C 0.09 1.56 5.15 86.83 0.45 2.01 16 12 C -0.13 -1.92 7.09 32.07 0.23 -1.69 16 13 C -0.10 -1.75 6.07 31.60 0.19 -1.56 16 14 C 0.13 3.73 0.72 3.36 0.00 3.73 16 15 C -0.12 -2.95 6.21 31.46 0.20 -2.75 16 16 C 0.10 2.68 7.36 86.87 0.64 3.31 16 17 N -0.62 -24.89 2.94 -818.11 -2.41 -27.30 16 18 C 0.15 7.04 5.89 86.38 0.51 7.54 16 19 C -0.01 -0.36 4.37 29.85 0.13 -0.23 16 20 C -0.53 -33.92 9.66 25.60 0.25 -33.67 16 21 H 0.05 3.26 7.99 -2.91 -0.02 3.24 16 22 C 0.02 1.33 5.47 84.65 0.46 1.80 16 23 N -0.94 -62.12 13.96 21.45 0.30 -61.82 16 24 Si 0.94 51.26 27.46 68.60 1.88 53.14 16 25 H -0.28 -15.51 7.11 99.48 0.71 -14.80 16 26 H -0.26 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.26 -14.35 6.55 99.48 0.65 -13.70 16 28 C 0.51 21.19 5.78 87.62 0.51 21.70 16 29 O -0.58 -30.56 17.60 -3.04 -0.05 -30.62 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 2.01 6.64 -2.39 -0.02 2.00 16 33 H 0.22 0.55 8.06 -2.91 -0.02 0.52 16 34 H 0.18 2.02 5.16 -2.91 -0.02 2.00 16 35 H 0.09 1.45 5.92 -2.38 -0.01 1.43 16 36 H 0.11 1.02 7.76 -2.39 -0.02 1.00 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.13 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.14 1.05 7.45 -2.39 -0.02 1.03 16 40 H 0.08 1.47 7.81 -2.38 -0.02 1.45 16 41 H 0.06 1.83 6.91 -2.39 -0.02 1.81 16 42 H 0.15 1.82 7.44 -2.39 -0.02 1.80 16 43 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 46 H 0.05 2.60 7.92 -2.39 -0.02 2.58 16 47 H -0.02 -1.17 7.56 -2.39 -0.02 -1.19 16 48 H 0.02 0.98 7.21 -2.39 -0.02 0.96 16 49 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 Total: -1.00 -102.40 388.48 2.70 -99.70 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.09 Total: 9.84 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.27 Total: 13.12 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.43 Total: -117.67 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -0.11 Total: -58.12 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.88 Total: 53.14 kcal Total: -102.40 2.70 -99.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271351753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.409 kcal (2) G-P(sol) polarization free energy of solvation -102.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds