Wall clock time and date at job start Wed Apr 1 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 125.57727 * 2 1 4 4 C 1.46684 * 106.33562 * 180.02562 * 3 2 1 5 5 C 1.47272 * 126.94043 * 180.02562 * 4 3 2 6 6 O 1.21625 * 120.00159 * 352.89154 * 5 4 3 7 7 N 1.34774 * 119.99757 * 172.89196 * 5 4 3 8 8 C 1.47656 * 125.81433 * 354.41261 * 7 5 4 9 9 C 1.54976 * 104.85873 * 204.02437 * 8 7 5 10 10 C 1.55333 * 101.66637 * 323.40460 * 9 8 7 11 11 C 1.46232 * 125.81490 * 174.45106 * 7 5 4 12 12 C 1.54065 * 110.84661 * 299.98097 * 11 7 5 13 13 C 1.54645 * 101.51538 * 145.01421 * 12 11 7 14 14 N 1.46850 * 105.49696 * 334.99617 * 13 12 11 15 15 C 1.46503 * 124.36176 * 196.87358 * 14 13 12 16 16 C 1.53002 * 109.47146 * 270.02436 * 15 14 13 17 17 C 1.50703 * 109.47110 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99744 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00010 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00010 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00141 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47244 * 89.99541 * 21 19 17 23 23 H 1.48493 * 109.47454 * 209.99751 * 21 19 17 24 24 H 1.48508 * 109.47100 * 329.99569 * 21 19 17 25 25 C 1.34651 * 111.27069 * 16.87321 * 14 13 12 26 26 O 1.21272 * 125.07619 * 179.16142 * 25 14 13 27 27 C 1.36766 * 106.11563 * 0.26410 * 4 3 2 28 28 N 1.34657 * 108.39558 * 359.57129 * 27 4 3 29 29 H 0.97004 * 124.85181 * 180.14854 * 28 27 4 30 30 H 1.09000 * 109.46953 * 89.99345 * 1 2 3 31 31 H 1.08992 * 109.47078 * 209.99994 * 1 2 3 32 32 H 1.09002 * 109.46662 * 329.99894 * 1 2 3 33 33 H 1.08001 * 126.83052 * 0.05505 * 3 2 1 34 34 H 1.09005 * 110.35829 * 322.86455 * 8 7 5 35 35 H 1.08995 * 110.36288 * 85.07093 * 8 7 5 36 36 H 1.08998 * 110.98791 * 81.49771 * 9 8 7 37 37 H 1.08998 * 110.98578 * 205.27679 * 9 8 7 38 38 H 1.08999 * 110.75947 * 276.59091 * 10 9 8 39 39 H 1.08996 * 110.76544 * 153.20386 * 10 9 8 40 40 H 1.08999 * 111.23886 * 26.87193 * 12 11 7 41 41 H 1.09011 * 110.87475 * 262.99117 * 12 11 7 42 42 H 1.09001 * 110.24177 * 215.98747 * 13 12 11 43 43 H 1.08999 * 110.24036 * 94.00176 * 13 12 11 44 44 H 1.08998 * 109.47391 * 30.02368 * 15 14 13 45 45 H 1.08999 * 109.46923 * 150.02436 * 15 14 13 46 46 H 1.08998 * 109.46920 * 300.00220 * 16 15 14 47 47 H 1.08999 * 109.47209 * 60.00175 * 16 15 14 48 48 H 0.97004 * 119.99960 * 180.02562 * 20 19 17 49 49 H 1.08000 * 125.79697 * 179.72178 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6104 -0.0006 5 6 4.8979 1.4300 -0.0003 6 8 4.8214 2.6370 -0.1298 7 7 6.1023 0.8427 0.1434 8 6 6.3381 -0.5876 0.4244 9 6 7.7364 -0.6364 1.0908 10 6 8.4956 0.4708 0.3095 11 6 7.3983 1.5135 0.0485 12 6 7.5831 2.1552 -1.3399 13 6 8.3815 3.4315 -0.9863 14 7 8.0498 3.7266 0.4135 15 6 8.2858 5.0175 1.0648 16 6 9.6798 5.0234 1.6953 17 6 9.9223 6.3512 2.3658 18 1 9.1582 7.1143 2.3446 19 6 11.1189 6.5913 3.0070 20 7 11.3307 7.7501 3.5917 21 14 12.4401 5.2712 3.0442 22 1 13.3271 5.4252 1.8631 23 1 13.2418 5.4080 4.2865 24 1 11.8016 3.9308 3.0122 25 6 7.5009 2.6577 1.0212 26 8 7.1470 2.6207 2.1806 27 6 3.5997 -0.7552 -0.0070 28 7 2.3007 -1.1099 -0.0006 29 1 1.9756 -2.0238 -0.0011 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9630 2.1233 0.0008 34 1 5.5792 -0.9701 1.1069 35 1 6.3377 -1.1613 -0.5024 36 1 7.6723 -0.3919 2.1511 37 1 8.2050 -1.6096 0.9442 38 1 8.8890 0.0807 -0.6292 39 1 9.2944 0.8946 0.9180 40 1 6.6226 2.4072 -1.7894 41 1 8.1598 1.5028 -1.9957 42 1 8.0759 4.2575 -1.6285 43 1 9.4509 3.2481 -1.0898 44 1 8.2181 5.8153 0.3252 45 1 7.5358 5.1759 1.8397 46 1 9.7474 4.2256 2.4349 47 1 10.4298 4.8650 0.9204 48 1 12.1728 7.9192 4.0425 49 1 4.4400 -1.4337 -0.0134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271354423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:28 Heat of formation + Delta-G solvation = -6.524497 kcal Electronic energy + Delta-G solvation = -31197.516960 eV Core-core repulsion = 27125.698735 eV Total energy + Delta-G solvation = -4071.818225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 5.84 seconds Orbital eigenvalues (eV) -41.65878 -40.96869 -38.52437 -37.04042 -35.91180 -33.70253 -32.53364 -31.82436 -31.67166 -30.90476 -29.47258 -27.94573 -26.45496 -25.34007 -24.69717 -23.01436 -21.97530 -21.55776 -20.76683 -20.47853 -19.56627 -18.38571 -17.47169 -16.92300 -16.56264 -16.30534 -15.66212 -15.42529 -15.25503 -14.91473 -14.42088 -14.22446 -14.18289 -14.01067 -13.58269 -13.50389 -13.18563 -13.12324 -12.98845 -12.85847 -12.79862 -12.67522 -12.61755 -12.47001 -12.13962 -12.02631 -11.76819 -11.49890 -11.32912 -11.25236 -10.95395 -10.74559 -10.38146 -9.93222 -9.85485 -9.82059 -9.56039 -9.20354 -9.04660 -8.50468 -8.48272 -8.41383 -8.01303 -6.00713 -3.98988 1.57588 2.16570 2.62040 2.90422 3.24648 3.32868 3.40576 3.46507 3.48875 3.62364 4.23622 4.28849 4.46033 4.49020 4.55084 4.57514 4.75924 4.78364 4.83932 4.88014 5.01898 5.06071 5.16368 5.17732 5.31271 5.33362 5.42559 5.45545 5.49956 5.59312 5.64134 5.70959 5.75305 5.82024 5.85218 5.96930 6.01725 6.09721 6.32161 6.45793 6.55189 6.66361 6.70595 6.95941 7.13069 7.25089 7.43908 7.50544 7.75849 7.82957 8.31982 8.54689 8.73171 9.03345 9.61213 11.12550 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.002731 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.248725 B =10248.639171 C =10870.733985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.004 3.996 3 C -0.136 4.136 4 C -0.215 4.215 5 C 0.603 3.397 6 O -0.526 6.526 7 N -0.596 5.596 8 C 0.094 3.906 9 C -0.133 4.133 10 C -0.111 4.111 11 C 0.133 3.867 12 C -0.135 4.135 13 C 0.106 3.894 14 N -0.609 5.609 15 C 0.140 3.860 16 C -0.024 4.024 17 C -0.518 4.518 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.523 3.477 26 O -0.521 6.521 27 C 0.033 3.967 28 N -0.550 5.550 29 H 0.414 0.586 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.019 0.981 47 H 0.012 0.988 48 H 0.263 0.737 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 -26.375 -13.563 33.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.160 4.160 4 C -0.225 4.225 5 C 0.394 3.606 6 O -0.402 6.402 7 N -0.331 5.331 8 C -0.028 4.028 9 C -0.171 4.171 10 C -0.150 4.150 11 C 0.044 3.956 12 C -0.174 4.174 13 C -0.019 4.019 14 N -0.342 5.342 15 C 0.020 3.980 16 C -0.062 4.062 17 C -0.557 4.557 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 C 0.308 3.692 26 O -0.397 6.397 27 C -0.102 4.102 28 N -0.145 5.145 29 H 0.251 0.749 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.165 0.835 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.038 0.962 47 H 0.031 0.969 48 H 0.073 0.927 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.459 -25.590 -12.875 33.038 hybrid contribution 0.807 -0.942 0.082 1.243 sum -15.652 -26.532 -12.793 33.355 Atomic orbital electron populations 1.20319 0.87654 1.03417 1.02720 1.20302 0.93648 0.85938 1.10653 1.21735 0.89960 0.98089 1.06237 1.20324 0.93362 0.92168 1.16658 1.17090 0.80900 0.86741 0.75869 1.90826 1.85943 1.13876 1.49547 1.47962 1.03988 1.09027 1.72114 1.22668 0.98142 0.82462 0.99573 1.22872 0.94101 0.99143 1.00991 1.22530 0.96277 0.94412 1.01732 1.21165 0.84917 0.93549 0.95984 1.22991 1.02140 0.96796 0.95481 1.22028 0.99151 0.97324 0.83353 1.48446 1.60647 1.13437 1.11669 1.21561 0.99544 0.80527 0.96411 1.19900 0.92114 0.98313 0.95862 1.20986 1.02155 0.98595 1.33948 0.90783 1.24980 0.98245 0.95301 0.94761 1.69914 1.25139 1.22729 1.36286 0.86763 0.81842 0.83127 0.77500 1.20299 1.21330 1.19066 1.20301 0.77146 0.84229 0.87541 1.90673 1.49662 1.82574 1.16744 1.22503 0.86564 0.96044 1.05125 1.41562 1.05830 1.08686 1.58438 0.74937 0.90984 0.91777 0.89906 0.83461 0.89942 0.90975 0.89723 0.89382 0.89260 0.89335 0.89275 0.89236 0.90288 0.91079 0.91028 0.90653 0.96223 0.96934 0.92719 0.80234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.41 36.01 0.37 -0.06 16 2 C 0.00 0.03 7.13 -81.86 -0.58 -0.55 16 3 C -0.14 -1.64 10.87 -37.50 -0.41 -2.05 16 4 C -0.21 -2.74 6.21 -103.35 -0.64 -3.38 16 5 C 0.60 9.69 7.19 -12.59 -0.09 9.60 16 6 O -0.53 -10.70 15.62 5.26 0.08 -10.62 16 7 N -0.60 -8.10 2.90 -158.59 -0.46 -8.56 16 8 C 0.09 0.81 5.14 -2.37 -0.01 0.80 16 9 C -0.13 -1.19 7.09 -24.45 -0.17 -1.36 16 10 C -0.11 -1.21 6.08 -25.18 -0.15 -1.37 16 11 C 0.13 1.93 0.73 -132.33 -0.10 1.83 16 12 C -0.14 -1.69 6.21 -25.31 -0.16 -1.85 16 13 C 0.11 1.54 7.36 -2.99 -0.02 1.52 16 14 N -0.61 -12.02 2.94 -172.49 -0.51 -12.53 16 15 C 0.14 3.17 5.88 -4.04 -0.02 3.15 16 16 C -0.02 -0.60 4.37 -27.88 -0.12 -0.73 16 17 C -0.52 -15.44 9.66 -34.44 -0.33 -15.78 16 18 H 0.07 2.35 7.99 -52.48 -0.42 1.93 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -28.59 13.96 55.43 0.77 -27.82 16 21 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 25 C 0.52 10.62 5.76 -11.12 -0.06 10.55 16 26 O -0.52 -12.79 17.62 5.56 0.10 -12.69 16 27 C 0.03 0.27 10.24 -16.84 -0.17 0.10 16 28 N -0.55 -3.60 5.90 -9.12 -0.05 -3.65 16 29 H 0.41 1.18 8.96 -40.82 -0.37 0.81 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.08 0.62 6.01 -51.93 -0.31 0.31 16 35 H 0.07 0.40 7.74 -51.93 -0.40 0.00 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.69 7.46 -51.93 -0.39 0.30 16 39 H 0.09 1.12 7.82 -51.93 -0.41 0.72 16 40 H 0.09 1.24 6.92 -51.93 -0.36 0.88 16 41 H 0.09 0.79 7.45 -51.92 -0.39 0.40 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.08 1.87 7.94 -51.93 -0.41 1.46 16 46 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 47 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.18 0.93 4.85 -52.49 -0.25 0.67 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -41.32 392.37 -9.04 -50.36 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.44 Total: -0.66 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.78 Total: 2.40 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.25 Total: -52.56 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.18 Total: -23.31 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -41.32 -9.04 -50.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271354423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.837 kcal (2) G-P(sol) polarization free energy of solvation -41.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.85 seconds