Wall clock time and date at job start Wed Apr 1 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 125.57727 * 2 1 4 4 C 1.46684 * 106.33562 * 180.02562 * 3 2 1 5 5 C 1.47272 * 126.94043 * 180.02562 * 4 3 2 6 6 O 1.21625 * 120.00159 * 352.89154 * 5 4 3 7 7 N 1.34774 * 119.99757 * 172.89196 * 5 4 3 8 8 C 1.47656 * 125.81433 * 354.41261 * 7 5 4 9 9 C 1.54976 * 104.85873 * 204.02437 * 8 7 5 10 10 C 1.55333 * 101.66637 * 323.40460 * 9 8 7 11 11 C 1.46232 * 125.81490 * 174.45106 * 7 5 4 12 12 C 1.54065 * 110.84661 * 299.98097 * 11 7 5 13 13 C 1.54645 * 101.51538 * 145.01421 * 12 11 7 14 14 N 1.46850 * 105.49696 * 334.99617 * 13 12 11 15 15 C 1.46503 * 124.36176 * 196.87358 * 14 13 12 16 16 C 1.53002 * 109.47146 * 270.02436 * 15 14 13 17 17 C 1.50703 * 109.47110 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99744 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00010 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00010 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00141 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47244 * 89.99541 * 21 19 17 23 23 H 1.48493 * 109.47454 * 209.99751 * 21 19 17 24 24 H 1.48508 * 109.47100 * 329.99569 * 21 19 17 25 25 C 1.34651 * 111.27069 * 16.87321 * 14 13 12 26 26 O 1.21272 * 125.07619 * 179.16142 * 25 14 13 27 27 C 1.36766 * 106.11563 * 0.26410 * 4 3 2 28 28 N 1.34657 * 108.39558 * 359.57129 * 27 4 3 29 29 H 0.97004 * 124.85181 * 180.14854 * 28 27 4 30 30 H 1.09000 * 109.46953 * 89.99345 * 1 2 3 31 31 H 1.08992 * 109.47078 * 209.99994 * 1 2 3 32 32 H 1.09002 * 109.46662 * 329.99894 * 1 2 3 33 33 H 1.08001 * 126.83052 * 0.05505 * 3 2 1 34 34 H 1.09005 * 110.35829 * 322.86455 * 8 7 5 35 35 H 1.08995 * 110.36288 * 85.07093 * 8 7 5 36 36 H 1.08998 * 110.98791 * 81.49771 * 9 8 7 37 37 H 1.08998 * 110.98578 * 205.27679 * 9 8 7 38 38 H 1.08999 * 110.75947 * 276.59091 * 10 9 8 39 39 H 1.08996 * 110.76544 * 153.20386 * 10 9 8 40 40 H 1.08999 * 111.23886 * 26.87193 * 12 11 7 41 41 H 1.09011 * 110.87475 * 262.99117 * 12 11 7 42 42 H 1.09001 * 110.24177 * 215.98747 * 13 12 11 43 43 H 1.08999 * 110.24036 * 94.00176 * 13 12 11 44 44 H 1.08998 * 109.47391 * 30.02368 * 15 14 13 45 45 H 1.08999 * 109.46923 * 150.02436 * 15 14 13 46 46 H 1.08998 * 109.46920 * 300.00220 * 16 15 14 47 47 H 1.08999 * 109.47209 * 60.00175 * 16 15 14 48 48 H 0.97004 * 119.99960 * 180.02562 * 20 19 17 49 49 H 1.08000 * 125.79697 * 179.72178 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6104 -0.0006 5 6 4.8979 1.4300 -0.0003 6 8 4.8214 2.6370 -0.1298 7 7 6.1023 0.8427 0.1434 8 6 6.3381 -0.5876 0.4244 9 6 7.7364 -0.6364 1.0908 10 6 8.4956 0.4708 0.3095 11 6 7.3983 1.5135 0.0485 12 6 7.5831 2.1552 -1.3399 13 6 8.3815 3.4315 -0.9863 14 7 8.0498 3.7266 0.4135 15 6 8.2858 5.0175 1.0648 16 6 9.6798 5.0234 1.6953 17 6 9.9223 6.3512 2.3658 18 1 9.1582 7.1143 2.3446 19 6 11.1189 6.5913 3.0070 20 7 11.3307 7.7501 3.5917 21 14 12.4401 5.2712 3.0442 22 1 13.3271 5.4252 1.8631 23 1 13.2418 5.4080 4.2865 24 1 11.8016 3.9308 3.0122 25 6 7.5009 2.6577 1.0212 26 8 7.1470 2.6207 2.1806 27 6 3.5997 -0.7552 -0.0070 28 7 2.3007 -1.1099 -0.0006 29 1 1.9756 -2.0238 -0.0011 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9630 2.1233 0.0008 34 1 5.5792 -0.9701 1.1069 35 1 6.3377 -1.1613 -0.5024 36 1 7.6723 -0.3919 2.1511 37 1 8.2050 -1.6096 0.9442 38 1 8.8890 0.0807 -0.6292 39 1 9.2944 0.8946 0.9180 40 1 6.6226 2.4072 -1.7894 41 1 8.1598 1.5028 -1.9957 42 1 8.0759 4.2575 -1.6285 43 1 9.4509 3.2481 -1.0898 44 1 8.2181 5.8153 0.3252 45 1 7.5358 5.1759 1.8397 46 1 9.7474 4.2256 2.4349 47 1 10.4298 4.8650 0.9204 48 1 12.1728 7.9192 4.0425 49 1 4.4400 -1.4337 -0.0134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271354423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:26 Heat of formation + Delta-G solvation = -37.857819 kcal Electronic energy + Delta-G solvation = -31198.875675 eV Core-core repulsion = 27125.698735 eV Total energy + Delta-G solvation = -4073.176940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.59829 -41.93971 -39.79700 -38.18426 -37.50500 -35.63560 -33.97218 -33.09285 -32.39671 -31.73917 -31.07416 -29.04612 -27.22704 -27.02607 -25.81739 -24.05840 -23.33971 -22.72137 -21.94985 -21.28384 -20.86698 -19.62391 -19.11266 -18.18525 -17.73385 -17.26715 -17.12733 -16.80183 -16.34768 -16.23455 -15.74295 -15.47406 -15.27616 -15.00282 -14.93980 -14.74341 -14.57204 -14.45302 -14.26743 -13.95531 -13.72621 -13.61356 -13.46641 -13.41488 -13.35557 -13.24610 -12.95332 -12.83529 -12.63940 -12.32063 -12.12965 -12.00970 -12.00699 -11.87839 -11.62121 -11.57188 -11.02707 -10.93758 -10.83191 -9.91068 -9.64728 -9.54861 -9.14764 -8.36090 -6.42419 0.73937 1.28728 1.33714 1.38215 1.43043 1.46012 1.93280 2.14313 2.31206 2.37338 2.49925 2.97876 3.27623 3.37773 3.50244 3.74680 3.86831 3.95054 4.00486 4.08290 4.16025 4.21203 4.24098 4.34189 4.42261 4.52709 4.61657 4.62417 4.62932 4.68521 4.78114 4.79453 4.83917 4.89656 4.92862 4.99558 5.07062 5.07839 5.09810 5.13247 5.22451 5.30235 5.38936 5.44252 5.68103 5.73269 5.92980 6.16589 6.22647 6.52040 6.62845 6.66465 7.15338 7.22420 7.25004 8.80638 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.002731 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.248725 B =10248.639171 C =10870.733985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.023 3.977 3 C -0.188 4.188 4 C -0.264 4.264 5 C 0.591 3.409 6 O -0.594 6.594 7 N -0.598 5.598 8 C 0.086 3.914 9 C -0.128 4.128 10 C -0.108 4.108 11 C 0.133 3.867 12 C -0.120 4.120 13 C 0.094 3.906 14 N -0.619 5.619 15 C 0.149 3.851 16 C -0.006 4.006 17 C -0.539 4.539 18 H 0.032 0.968 19 C 0.008 3.992 20 N -0.946 5.946 21 Si 0.956 3.044 22 H -0.251 1.251 23 H -0.280 1.280 24 H -0.260 1.260 25 C 0.503 3.497 26 O -0.584 6.584 27 C 0.070 3.930 28 N -0.530 5.530 29 H 0.438 0.562 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.048 0.952 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.145 0.855 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.035 0.965 46 H 0.000 1.000 47 H 0.035 0.965 48 H 0.269 0.731 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.040 -32.504 -16.300 39.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.212 4.212 4 C -0.274 4.274 5 C 0.384 3.616 6 O -0.476 6.476 7 N -0.330 5.330 8 C -0.035 4.035 9 C -0.166 4.166 10 C -0.146 4.146 11 C 0.043 3.957 12 C -0.158 4.158 13 C -0.028 4.028 14 N -0.352 5.352 15 C 0.027 3.973 16 C -0.045 4.045 17 C -0.577 4.577 18 H 0.051 0.949 19 C -0.190 4.190 20 N -0.586 5.586 21 Si 0.779 3.221 22 H -0.175 1.175 23 H -0.205 1.205 24 H -0.184 1.184 25 C 0.290 3.710 26 O -0.464 6.464 27 C -0.068 4.068 28 N -0.127 5.127 29 H 0.279 0.721 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.067 0.933 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.162 0.838 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -15.316 -31.796 -15.662 38.612 hybrid contribution 0.317 1.051 0.998 1.484 sum -14.999 -30.745 -14.664 37.219 Atomic orbital electron populations 1.20433 0.85225 1.04460 1.03920 1.20582 0.94969 0.85378 1.07832 1.21762 0.91199 0.98338 1.09901 1.20270 0.92143 0.94131 1.20855 1.17723 0.82498 0.86395 0.74938 1.90769 1.87027 1.16782 1.52973 1.48128 1.02879 1.11108 1.70925 1.23140 0.98215 0.79879 1.02245 1.22917 0.94381 1.00684 0.98628 1.22683 0.94342 0.93549 1.04064 1.21326 0.86998 0.92602 0.94773 1.23036 1.01665 0.96144 0.94936 1.22446 1.01179 0.98971 0.80179 1.48595 1.60514 1.12112 1.13939 1.21116 0.96931 0.83226 0.95997 1.19681 0.94105 0.95109 0.95572 1.21256 1.01632 0.99628 1.35185 0.94947 1.26017 1.01025 0.98037 0.93905 1.70061 1.26309 1.25098 1.37101 0.85576 0.78385 0.79436 0.78742 1.17493 1.20512 1.18443 1.21625 0.75565 0.86016 0.87775 1.90609 1.52003 1.84012 1.19796 1.22894 0.88052 0.94499 1.01310 1.41582 1.05102 1.09465 1.56543 0.72069 0.89602 0.89180 0.90436 0.86198 0.88973 0.85847 0.93334 0.84608 0.84232 0.91664 0.91193 0.83752 0.89708 0.88347 0.89902 0.94658 0.98120 0.94673 0.92167 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.41 71.24 0.74 0.04 16 2 C 0.02 0.36 7.13 40.98 0.29 0.65 16 3 C -0.19 -4.83 10.87 23.62 0.26 -4.57 16 4 C -0.26 -6.78 6.21 -19.04 -0.12 -6.90 16 5 C 0.59 19.81 7.19 86.62 0.62 20.44 16 6 O -0.59 -26.55 15.62 -4.11 -0.06 -26.62 16 7 N -0.60 -15.58 2.90 -773.90 -2.24 -17.82 16 8 C 0.09 1.11 5.14 86.83 0.45 1.56 16 9 C -0.13 -1.81 7.09 32.07 0.23 -1.58 16 10 C -0.11 -1.96 6.08 31.60 0.19 -1.77 16 11 C 0.13 3.68 0.73 3.42 0.00 3.68 16 12 C -0.12 -2.70 6.21 31.51 0.20 -2.50 16 13 C 0.09 2.64 7.36 86.87 0.64 3.28 16 14 N -0.62 -25.46 2.94 -818.10 -2.41 -27.86 16 15 C 0.15 7.27 5.88 86.38 0.51 7.78 16 16 C -0.01 -0.33 4.37 29.85 0.13 -0.20 16 17 C -0.54 -33.78 9.66 25.60 0.25 -33.53 16 18 H 0.03 2.22 7.99 -2.91 -0.02 2.20 16 19 C 0.01 0.47 5.47 84.65 0.46 0.94 16 20 N -0.95 -61.89 13.96 21.45 0.30 -61.59 16 21 Si 0.96 46.65 27.47 68.60 1.88 48.54 16 22 H -0.25 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.26 -12.37 6.54 99.48 0.65 -11.72 16 25 C 0.50 21.40 5.76 87.62 0.50 21.91 16 26 O -0.58 -31.10 17.62 -3.00 -0.05 -31.16 16 27 C 0.07 0.93 10.24 83.91 0.86 1.79 16 28 N -0.53 -5.04 5.90 -182.76 -1.08 -6.12 16 29 H 0.44 0.26 8.96 -92.71 -0.83 -0.57 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.09 1.02 6.01 -2.38 -0.01 1.00 16 35 H 0.12 0.45 7.74 -2.39 -0.02 0.43 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.14 1.15 7.46 -2.39 -0.02 1.14 16 39 H 0.06 1.52 7.82 -2.39 -0.02 1.50 16 40 H 0.07 1.89 6.92 -2.39 -0.02 1.88 16 41 H 0.14 1.68 7.45 -2.38 -0.02 1.66 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.08 3.75 8.14 -2.39 -0.02 3.73 16 45 H 0.03 1.95 7.94 -2.39 -0.02 1.93 16 46 H 0.00 0.02 7.20 -2.39 -0.02 0.01 16 47 H 0.04 1.70 7.57 -2.39 -0.02 1.68 16 48 H 0.27 16.27 8.31 -92.70 -0.77 15.50 16 49 H 0.22 0.98 4.85 -2.91 -0.01 0.96 16 Total: -1.00 -104.78 392.37 2.64 -102.14 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.09 Total: 9.51 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.21 Total: 10.99 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -5.43 Total: -113.40 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -0.12 Total: -57.77 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.88 Total: 48.54 kcal Total: -104.78 2.64 -102.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271354423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.282 kcal (2) G-P(sol) polarization free energy of solvation -104.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds