Wall clock time and date at job start Wed Apr 1 2020 05:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35448 * 125.56308 * 2 1 4 4 C 1.39834 * 107.86540 * 179.70168 * 3 2 1 5 5 C 1.37870 * 107.08464 * 0.41812 * 4 3 2 6 6 C 1.46674 * 126.23524 * 179.84957 * 5 4 3 7 7 O 1.21695 * 120.00001 * 359.68426 * 6 5 4 8 8 N 1.34777 * 120.00030 * 179.69018 * 6 5 4 9 9 C 1.47454 * 125.57345 * 359.81941 * 8 6 5 10 10 C 1.54583 * 107.16904 * 178.97175 * 9 8 6 11 11 C 1.53712 * 102.94859 * 339.33847 * 10 9 8 12 12 C 1.53205 * 111.53870 * 153.88485 * 11 10 9 13 13 C 1.54801 * 101.39077 * 98.87863 * 12 11 10 14 14 N 1.46931 * 105.54149 * 24.16668 * 13 12 11 15 15 C 1.46503 * 124.37828 * 163.26832 * 14 13 12 16 16 C 1.52999 * 109.46743 * 90.00110 * 15 14 13 17 17 C 1.50706 * 109.46966 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99679 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47000 * 59.99746 * 21 19 17 23 23 H 1.48506 * 109.46947 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46778 * 299.99674 * 21 19 17 25 25 C 1.34887 * 111.24248 * 343.25272 * 14 13 12 26 26 O 1.21284 * 125.22178 * 181.25307 * 25 14 13 27 27 C 1.47704 * 125.60768 * 179.97438 * 8 6 5 28 28 N 1.35526 * 125.56414 * 179.97438 * 2 1 3 29 29 H 0.97004 * 125.68203 * 0.02562 * 28 2 1 30 30 H 1.08996 * 109.47470 * 270.04563 * 1 2 3 31 31 H 1.09004 * 109.47139 * 30.04184 * 1 2 3 32 32 H 1.08998 * 109.47222 * 150.04055 * 1 2 3 33 33 H 1.08001 * 126.06973 * 359.97438 * 3 2 1 34 34 H 1.08000 * 126.46335 * 180.29770 * 4 3 2 35 35 H 1.09001 * 109.84487 * 59.64584 * 9 8 6 36 36 H 1.09005 * 110.05625 * 298.41415 * 9 8 6 37 37 H 1.09002 * 110.74912 * 220.92164 * 10 9 8 38 38 H 1.09002 * 110.74690 * 97.75131 * 10 9 8 39 39 H 1.08995 * 111.04222 * 216.91069 * 12 11 10 40 40 H 1.09004 * 111.04307 * 340.85421 * 12 11 10 41 41 H 1.09007 * 110.22867 * 143.17911 * 13 12 11 42 42 H 1.08997 * 110.23942 * 265.05985 * 13 12 11 43 43 H 1.08996 * 109.46781 * 210.00178 * 15 14 13 44 44 H 1.09000 * 109.46944 * 329.99846 * 15 14 13 45 45 H 1.09004 * 109.46994 * 299.99953 * 16 15 14 46 46 H 1.09000 * 109.47109 * 60.00002 * 16 15 14 47 47 H 0.96998 * 120.00207 * 179.97438 * 20 19 17 48 48 H 1.09002 * 110.39038 * 83.80221 * 27 8 6 49 49 H 1.08997 * 110.48989 * 321.46240 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6269 0.6768 0.0069 5 6 3.6122 -0.7018 0.0014 6 6 4.7860 -1.5814 0.0024 7 8 5.9049 -1.1029 0.0028 8 7 4.6253 -2.9196 0.0029 9 6 3.3322 -3.6283 0.0061 10 6 3.6418 -5.1426 -0.0212 11 6 5.0780 -5.1908 -0.5666 12 6 5.8150 -6.4502 -0.0999 13 6 5.6672 -7.3674 -1.3381 14 7 5.4665 -6.4615 -2.4774 15 6 5.6270 -6.8495 -3.8810 16 6 4.2915 -7.3616 -4.4243 17 6 4.4567 -7.7612 -5.8680 18 1 5.4179 -7.6596 -6.3498 19 6 3.3808 -8.2565 -6.5736 20 7 2.2104 -8.3807 -5.9867 21 14 3.5853 -8.7512 -8.3633 22 1 4.6067 -9.8241 -8.4667 23 1 2.2891 -9.2484 -8.8907 24 1 4.0224 -7.5737 -9.1554 25 6 5.1151 -5.2267 -2.0639 26 8 4.8671 -4.2892 -2.7923 27 6 5.7151 -3.9166 0.0033 28 7 2.2953 -1.1025 0.0005 29 1 1.9834 -2.0210 0.0006 30 1 -0.3634 0.0008 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 1.9545 2.1268 -0.0004 34 1 4.5024 1.3091 0.0132 35 1 2.7565 -3.3518 -0.8771 36 1 2.7725 -3.3807 0.9082 37 1 2.9571 -5.6647 -0.6895 38 1 3.5957 -5.5643 0.9829 39 1 6.8638 -6.2364 0.1058 40 1 5.3284 -6.8881 0.7717 41 1 6.5728 -7.9573 -1.4805 42 1 4.8051 -8.0239 -1.2204 43 1 5.9484 -5.9852 -4.4623 44 1 6.3764 -7.6374 -3.9568 45 1 3.9702 -8.2258 -3.8430 46 1 3.5422 -6.5736 -4.3485 47 1 1.4533 -8.7288 -6.4832 48 1 6.0696 -4.0912 1.0192 49 1 6.5357 -3.5851 -0.6328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272323951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:06 Heat of formation + Delta-G solvation = -16.960606 kcal Electronic energy + Delta-G solvation = -30739.603829 eV Core-core repulsion = 26667.333061 eV Total energy + Delta-G solvation = -4072.270769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.70721 -40.97635 -38.96673 -37.07782 -36.10066 -34.00841 -32.65684 -31.81474 -31.28687 -30.56992 -29.44378 -28.31639 -26.92925 -25.33278 -24.37243 -23.32540 -22.01841 -21.43359 -20.72896 -20.47741 -19.83395 -18.81377 -17.79120 -16.67313 -16.28051 -16.04978 -15.83794 -15.66354 -15.33675 -14.87450 -14.78582 -14.49481 -14.20627 -13.84074 -13.73716 -13.44684 -13.31827 -13.07636 -12.95640 -12.84539 -12.72389 -12.65786 -12.59112 -12.40757 -12.28151 -12.12938 -11.94456 -11.72060 -11.39549 -11.20929 -10.97011 -10.92434 -10.73997 -10.15913 -10.05685 -9.91470 -9.43621 -9.19375 -9.14462 -8.86253 -8.42365 -8.17444 -8.10147 -6.07992 -4.11463 1.36492 2.56060 2.68793 2.82922 2.98682 3.29469 3.33487 3.34472 3.35428 3.43804 4.03636 4.14413 4.21653 4.41097 4.54715 4.60188 4.65650 4.74790 4.85206 4.92112 5.06350 5.18658 5.20053 5.21709 5.24198 5.28501 5.37614 5.42057 5.48548 5.55217 5.57899 5.60478 5.71588 5.73653 5.90580 5.93116 5.94674 5.99674 6.13418 6.39950 6.64100 6.73479 6.80513 6.91083 7.20080 7.32412 7.41056 7.59047 7.76503 7.90933 8.04948 8.27522 8.57224 8.94744 9.52956 11.03393 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.002771 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.916105 B =10101.465849 C =11448.555468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.046 3.954 3 C -0.210 4.210 4 C -0.105 4.105 5 C -0.049 4.049 6 C 0.609 3.391 7 O -0.531 6.531 8 N -0.612 5.612 9 C 0.091 3.909 10 C -0.105 4.105 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.102 3.898 14 N -0.611 5.611 15 C 0.128 3.872 16 C 0.014 3.986 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.526 3.474 26 O -0.517 6.517 27 C 0.138 3.862 28 N -0.540 5.540 29 H 0.415 0.585 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.262 0.738 48 H 0.080 0.920 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 9.042 20.070 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C -0.234 4.234 4 C -0.131 4.131 5 C -0.162 4.162 6 C 0.400 3.600 7 O -0.408 6.408 8 N -0.346 5.346 9 C -0.032 4.032 10 C -0.143 4.143 11 C -0.119 4.119 12 C -0.155 4.155 13 C -0.022 4.022 14 N -0.344 5.344 15 C 0.008 3.992 16 C -0.024 4.024 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C 0.311 3.689 26 O -0.392 6.392 27 C 0.015 3.985 28 N -0.141 5.141 29 H 0.258 0.742 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.035 0.965 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.595 9.604 19.540 21.780 hybrid contribution -0.272 -0.944 -1.138 1.504 sum -0.867 8.659 18.401 20.356 Atomic orbital electron populations 1.20421 0.87663 1.03808 1.02912 1.20606 0.93767 0.86488 1.06346 1.20662 0.92326 0.97915 1.12476 1.21280 0.97723 0.91637 1.02510 1.20264 0.82758 0.94494 1.18659 1.16644 0.87607 0.79619 0.76165 1.90831 1.24354 1.74320 1.51260 1.48345 1.07659 1.04777 1.73778 1.22326 0.86645 0.93265 1.00992 1.22407 0.94853 0.94420 1.02596 1.21620 0.97690 0.96760 0.95841 1.22481 1.01426 0.93346 0.98248 1.22108 1.02311 0.92877 0.84884 1.48680 1.67718 1.10329 1.07699 1.21829 1.01067 0.99590 0.76708 1.19388 0.91103 0.96280 0.95651 1.21050 0.96190 1.42909 0.96088 0.92517 1.24991 0.95177 0.95580 0.98447 1.69956 1.00633 1.45795 1.36856 0.86606 0.77299 0.78970 0.84848 1.20144 1.21222 1.20107 1.19884 0.77155 0.82981 0.88899 1.90739 1.48955 1.38649 1.60854 1.21855 0.90502 0.85180 1.00948 1.42626 1.05578 1.08980 1.56895 0.74209 0.90657 0.89690 0.91420 0.83993 0.83506 0.90824 0.91141 0.88794 0.88858 0.89508 0.88789 0.90343 0.90844 0.91158 0.91508 0.96482 0.96238 0.92871 0.90192 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.41 36.01 0.37 -0.20 16 2 C 0.05 0.46 7.13 -81.96 -0.58 -0.13 16 3 C -0.21 -2.26 10.71 -39.98 -0.43 -2.69 16 4 C -0.10 -1.37 10.65 -39.12 -0.42 -1.78 16 5 C -0.05 -0.68 6.89 -81.98 -0.56 -1.25 16 6 C 0.61 9.60 7.82 -12.85 -0.10 9.50 16 7 O -0.53 -9.96 17.16 5.19 0.09 -9.87 16 8 N -0.61 -8.26 3.35 -172.24 -0.58 -8.84 16 9 C 0.09 0.96 5.10 -2.69 -0.01 0.95 16 10 C -0.10 -1.02 5.94 -25.53 -0.15 -1.17 16 11 C -0.11 -1.38 0.68 -155.39 -0.10 -1.48 16 12 C -0.12 -1.02 6.26 -25.68 -0.16 -1.18 16 13 C 0.10 1.21 7.37 -2.86 -0.02 1.19 16 14 N -0.61 -10.49 2.95 -172.56 -0.51 -11.00 16 15 C 0.13 2.65 5.88 -4.04 -0.02 2.62 16 16 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 21 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.53 9.30 6.74 -11.36 -0.08 9.22 16 26 O -0.52 -11.59 17.51 5.55 0.10 -11.49 16 27 C 0.14 1.72 5.73 -3.16 -0.02 1.70 16 28 N -0.54 -5.94 5.62 -5.70 -0.03 -5.97 16 29 H 0.42 3.78 4.91 -40.82 -0.20 3.58 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.07 0.87 7.08 -51.93 -0.37 0.51 16 36 H 0.07 0.53 7.25 -51.93 -0.38 0.16 16 37 H 0.09 1.03 8.00 -51.93 -0.42 0.62 16 38 H 0.09 0.60 7.74 -51.93 -0.40 0.20 16 39 H 0.09 0.65 7.97 -51.93 -0.41 0.24 16 40 H 0.09 0.56 7.62 -51.93 -0.40 0.16 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.57 7.96 -51.93 -0.41 1.15 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 48 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 49 H 0.08 1.26 7.94 -51.93 -0.41 0.85 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -37.47 399.70 -9.62 -47.10 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.58 Total: 1.26 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.85 Total: 2.11 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.38 Total: -51.66 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.19 Total: -21.36 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.47 -9.62 -47.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272323951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.136 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds