Wall clock time and date at job start Wed Apr 1 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35448 * 125.56308 * 2 1 4 4 C 1.39834 * 107.86540 * 179.70168 * 3 2 1 5 5 C 1.37870 * 107.08464 * 0.41812 * 4 3 2 6 6 C 1.46674 * 126.23524 * 179.84957 * 5 4 3 7 7 O 1.21695 * 120.00001 * 359.68426 * 6 5 4 8 8 N 1.34777 * 120.00030 * 179.69018 * 6 5 4 9 9 C 1.47454 * 125.57345 * 359.81941 * 8 6 5 10 10 C 1.54583 * 107.16904 * 178.97175 * 9 8 6 11 11 C 1.53712 * 102.94859 * 339.33847 * 10 9 8 12 12 C 1.53205 * 111.53870 * 153.88485 * 11 10 9 13 13 C 1.54801 * 101.39077 * 98.87863 * 12 11 10 14 14 N 1.46931 * 105.54149 * 24.16668 * 13 12 11 15 15 C 1.46503 * 124.37828 * 163.26832 * 14 13 12 16 16 C 1.52999 * 109.46743 * 90.00110 * 15 14 13 17 17 C 1.50706 * 109.46966 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99679 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47000 * 59.99746 * 21 19 17 23 23 H 1.48506 * 109.46947 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46778 * 299.99674 * 21 19 17 25 25 C 1.34887 * 111.24248 * 343.25272 * 14 13 12 26 26 O 1.21284 * 125.22178 * 181.25307 * 25 14 13 27 27 C 1.47704 * 125.60768 * 179.97438 * 8 6 5 28 28 N 1.35526 * 125.56414 * 179.97438 * 2 1 3 29 29 H 0.97004 * 125.68203 * 0.02562 * 28 2 1 30 30 H 1.08996 * 109.47470 * 270.04563 * 1 2 3 31 31 H 1.09004 * 109.47139 * 30.04184 * 1 2 3 32 32 H 1.08998 * 109.47222 * 150.04055 * 1 2 3 33 33 H 1.08001 * 126.06973 * 359.97438 * 3 2 1 34 34 H 1.08000 * 126.46335 * 180.29770 * 4 3 2 35 35 H 1.09001 * 109.84487 * 59.64584 * 9 8 6 36 36 H 1.09005 * 110.05625 * 298.41415 * 9 8 6 37 37 H 1.09002 * 110.74912 * 220.92164 * 10 9 8 38 38 H 1.09002 * 110.74690 * 97.75131 * 10 9 8 39 39 H 1.08995 * 111.04222 * 216.91069 * 12 11 10 40 40 H 1.09004 * 111.04307 * 340.85421 * 12 11 10 41 41 H 1.09007 * 110.22867 * 143.17911 * 13 12 11 42 42 H 1.08997 * 110.23942 * 265.05985 * 13 12 11 43 43 H 1.08996 * 109.46781 * 210.00178 * 15 14 13 44 44 H 1.09000 * 109.46944 * 329.99846 * 15 14 13 45 45 H 1.09004 * 109.46994 * 299.99953 * 16 15 14 46 46 H 1.09000 * 109.47109 * 60.00002 * 16 15 14 47 47 H 0.96998 * 120.00207 * 179.97438 * 20 19 17 48 48 H 1.09002 * 110.39038 * 83.80221 * 27 8 6 49 49 H 1.08997 * 110.48989 * 321.46240 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6269 0.6768 0.0069 5 6 3.6122 -0.7018 0.0014 6 6 4.7860 -1.5814 0.0024 7 8 5.9049 -1.1029 0.0028 8 7 4.6253 -2.9196 0.0029 9 6 3.3322 -3.6283 0.0061 10 6 3.6418 -5.1426 -0.0212 11 6 5.0780 -5.1908 -0.5666 12 6 5.8150 -6.4502 -0.0999 13 6 5.6672 -7.3674 -1.3381 14 7 5.4665 -6.4615 -2.4774 15 6 5.6270 -6.8495 -3.8810 16 6 4.2915 -7.3616 -4.4243 17 6 4.4567 -7.7612 -5.8680 18 1 5.4179 -7.6596 -6.3498 19 6 3.3808 -8.2565 -6.5736 20 7 2.2104 -8.3807 -5.9867 21 14 3.5853 -8.7512 -8.3633 22 1 4.6067 -9.8241 -8.4667 23 1 2.2891 -9.2484 -8.8907 24 1 4.0224 -7.5737 -9.1554 25 6 5.1151 -5.2267 -2.0639 26 8 4.8671 -4.2892 -2.7923 27 6 5.7151 -3.9166 0.0033 28 7 2.2953 -1.1025 0.0005 29 1 1.9834 -2.0210 0.0006 30 1 -0.3634 0.0008 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 1.9545 2.1268 -0.0004 34 1 4.5024 1.3091 0.0132 35 1 2.7565 -3.3518 -0.8771 36 1 2.7725 -3.3807 0.9082 37 1 2.9571 -5.6647 -0.6895 38 1 3.5957 -5.5643 0.9829 39 1 6.8638 -6.2364 0.1058 40 1 5.3284 -6.8881 0.7717 41 1 6.5728 -7.9573 -1.4805 42 1 4.8051 -8.0239 -1.2204 43 1 5.9484 -5.9852 -4.4623 44 1 6.3764 -7.6374 -3.9568 45 1 3.9702 -8.2258 -3.8430 46 1 3.5422 -6.5736 -4.3485 47 1 1.4533 -8.7288 -6.4832 48 1 6.0696 -4.0912 1.0192 49 1 6.5357 -3.5851 -0.6328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272323951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:05 Heat of formation + Delta-G solvation = -42.723738 kcal Electronic energy + Delta-G solvation = -30740.721002 eV Core-core repulsion = 26667.333061 eV Total energy + Delta-G solvation = -4073.387942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.68371 -42.03723 -40.12782 -38.28220 -37.52091 -35.75861 -34.24220 -32.67404 -32.26408 -31.78776 -30.68736 -29.46358 -27.83717 -27.05932 -25.51341 -24.27430 -23.63003 -22.38352 -21.85788 -21.62204 -20.74885 -20.07537 -18.84452 -18.69027 -17.32518 -17.21529 -17.09472 -16.90459 -16.63517 -16.42845 -15.81408 -15.74042 -15.17956 -14.99204 -14.76821 -14.65129 -14.50153 -14.32757 -14.18286 -14.09941 -13.74792 -13.67158 -13.53758 -13.45865 -13.27750 -13.23728 -13.10004 -12.87599 -12.68074 -12.64523 -12.57450 -12.15461 -11.98855 -11.96208 -11.60981 -11.45826 -11.34466 -10.69963 -10.61364 -10.09053 -9.89839 -9.58832 -9.06159 -8.27179 -6.39638 0.35686 1.36557 1.40362 1.47216 1.49392 1.65701 1.72897 2.08442 2.13568 2.27564 2.38644 3.06378 3.14751 3.18483 3.23086 3.64397 3.77144 3.88176 3.94623 3.99938 4.22108 4.26295 4.27319 4.30976 4.34841 4.36187 4.51861 4.56024 4.61392 4.67134 4.73788 4.79270 4.80902 4.83655 4.88969 4.95634 5.02481 5.07050 5.14603 5.17180 5.26322 5.29662 5.43040 5.56500 5.76788 5.78720 5.88689 6.12303 6.24222 6.26401 6.43204 6.74808 6.91976 7.17374 7.30128 8.84568 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.002771 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.916105 B =10101.465849 C =11448.555468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.058 3.942 3 C -0.221 4.221 4 C -0.120 4.120 5 C -0.082 4.082 6 C 0.598 3.402 7 O -0.579 6.579 8 N -0.614 5.614 9 C 0.086 3.914 10 C -0.097 4.097 11 C -0.106 4.106 12 C -0.097 4.097 13 C 0.090 3.910 14 N -0.619 5.619 15 C 0.142 3.858 16 C 0.028 3.972 17 C -0.549 4.549 18 H 0.063 0.937 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.967 3.033 22 H -0.259 1.259 23 H -0.281 1.281 24 H -0.273 1.273 25 C 0.508 3.492 26 O -0.581 6.581 27 C 0.135 3.865 28 N -0.534 5.534 29 H 0.423 0.577 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.141 0.859 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.146 0.854 39 H 0.106 0.894 40 H 0.141 0.859 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.005 0.995 46 H -0.028 1.028 47 H 0.265 0.735 48 H 0.120 0.880 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 7.452 22.193 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.244 4.244 4 C -0.147 4.147 5 C -0.195 4.195 6 C 0.390 3.610 7 O -0.460 6.460 8 N -0.346 5.346 9 C -0.037 4.037 10 C -0.135 4.135 11 C -0.110 4.110 12 C -0.135 4.135 13 C -0.031 4.031 14 N -0.351 5.351 15 C 0.020 3.980 16 C -0.010 4.010 17 C -0.587 4.587 18 H 0.081 0.919 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.791 3.209 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.199 1.199 25 C 0.296 3.704 26 O -0.461 6.461 27 C 0.013 3.987 28 N -0.136 5.136 29 H 0.267 0.733 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.183 0.817 34 H 0.159 0.841 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.164 0.836 39 H 0.124 0.876 40 H 0.159 0.841 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.024 0.976 46 H -0.010 1.010 47 H 0.074 0.926 48 H 0.138 0.862 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.383 7.939 21.704 23.152 hybrid contribution -0.103 -0.423 -1.839 1.890 sum -1.486 7.516 19.866 21.292 Atomic orbital electron populations 1.20587 0.84640 1.04852 1.04583 1.21292 0.95488 0.85748 1.03563 1.20988 0.91292 0.99488 1.12668 1.21503 0.98885 0.91721 1.02581 1.20134 0.83436 0.94604 1.21293 1.17001 0.87635 0.80537 0.75795 1.90778 1.26030 1.75313 1.53852 1.48458 1.09182 1.04440 1.72543 1.22542 0.85522 0.93815 1.01796 1.22550 0.92540 0.93593 1.04827 1.21585 0.99979 0.98321 0.91118 1.22621 1.02751 0.90169 0.97926 1.22521 1.03503 0.92931 0.84153 1.48804 1.67146 1.11552 1.07560 1.21354 0.98668 0.98943 0.79061 1.19166 0.92411 0.94112 0.95288 1.21519 0.96724 1.43050 0.97442 0.91879 1.25964 0.94738 0.95366 1.03409 1.70085 1.01494 1.46481 1.38847 0.85474 0.77810 0.78926 0.78697 1.18370 1.20573 1.19851 1.21029 0.75581 0.82150 0.91643 1.90690 1.51516 1.40721 1.63176 1.22013 0.89476 0.84896 1.02303 1.42630 1.04674 1.09790 1.56504 0.73315 0.88522 0.88284 0.90744 0.81661 0.84121 0.93072 0.87351 0.90308 0.83610 0.87597 0.84082 0.88285 0.90427 0.93760 0.89007 0.97638 1.00997 0.92617 0.86196 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.41 71.24 0.74 -0.15 16 2 C 0.06 1.08 7.13 41.34 0.29 1.37 16 3 C -0.22 -4.63 10.71 22.01 0.24 -4.40 16 4 C -0.12 -3.26 10.65 22.57 0.24 -3.02 16 5 C -0.08 -2.38 6.89 40.35 0.28 -2.10 16 6 C 0.60 19.92 7.82 86.45 0.68 20.59 16 7 O -0.58 -23.34 17.16 -4.33 -0.07 -23.42 16 8 N -0.61 -16.74 3.35 -817.05 -2.73 -19.47 16 9 C 0.09 1.72 5.10 86.74 0.44 2.16 16 10 C -0.10 -1.64 5.94 31.37 0.19 -1.45 16 11 C -0.11 -2.37 0.68 -52.75 -0.04 -2.41 16 12 C -0.10 -1.28 6.26 31.28 0.20 -1.09 16 13 C 0.09 1.92 7.37 86.91 0.64 2.56 16 14 N -0.62 -21.53 2.95 -818.18 -2.41 -23.94 16 15 C 0.14 6.07 5.88 86.38 0.51 6.58 16 16 C 0.03 1.52 5.30 29.85 0.16 1.67 16 17 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 18 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 19 C 0.00 0.21 5.46 84.65 0.46 0.68 16 20 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 21 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.51 18.64 6.74 87.36 0.59 19.23 16 26 O -0.58 -28.20 17.51 -3.04 -0.05 -28.25 16 27 C 0.14 3.28 5.73 86.29 0.49 3.77 16 28 N -0.53 -11.57 5.62 -171.94 -0.97 -12.53 16 29 H 0.42 7.39 4.91 -92.71 -0.46 6.93 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.05 1.25 7.08 -2.39 -0.02 1.24 16 36 H 0.11 1.34 7.25 -2.38 -0.02 1.33 16 37 H 0.08 1.63 8.00 -2.39 -0.02 1.61 16 38 H 0.15 1.00 7.74 -2.39 -0.02 0.98 16 39 H 0.11 1.09 7.97 -2.39 -0.02 1.07 16 40 H 0.14 0.67 7.62 -2.38 -0.02 0.65 16 41 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.04 2.10 7.96 -2.39 -0.02 2.08 16 44 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 47 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.12 1.97 8.04 -2.39 -0.02 1.95 16 49 H 0.05 1.57 7.94 -2.39 -0.02 1.55 16 Total: -1.00 -90.92 399.70 2.92 -88.00 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.50 Total: 16.78 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.34 Total: 12.66 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -5.83 Total: -112.20 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.13 Total: -51.67 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -90.92 2.92 -88.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272323951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.280 kcal (2) G-P(sol) polarization free energy of solvation -90.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds