Wall clock time and date at job start Wed Apr 1 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35455 * 125.56663 * 2 1 4 4 C 1.39835 * 107.86663 * 179.70750 * 3 2 1 5 5 C 1.37867 * 107.08504 * 0.42005 * 4 3 2 6 6 C 1.46679 * 126.23423 * 179.84420 * 5 4 3 7 7 O 1.21690 * 119.99832 * 353.01734 * 6 5 4 8 8 N 1.34776 * 119.99857 * 173.01226 * 6 5 4 9 9 C 1.47649 * 125.81807 * 354.52666 * 8 6 5 10 10 C 1.54977 * 104.85727 * 204.02814 * 9 8 6 11 11 C 1.55326 * 101.66914 * 323.39912 * 10 9 8 12 12 C 1.46234 * 125.81290 * 174.55601 * 8 6 5 13 13 C 1.54056 * 111.02245 * 57.67108 * 12 8 6 14 14 C 1.54637 * 101.52333 * 263.78182 * 13 12 8 15 15 N 1.46847 * 105.50083 * 335.00917 * 14 13 12 16 16 C 1.46499 * 124.36921 * 196.87521 * 15 14 13 17 17 C 1.52997 * 109.47236 * 270.02545 * 16 15 14 18 18 C 1.50696 * 109.47274 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00183 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00137 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99828 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47019 * 89.99718 * 22 20 18 24 24 H 1.48503 * 109.47101 * 209.99642 * 22 20 18 25 25 H 1.48500 * 109.47267 * 329.99585 * 22 20 18 26 26 C 1.34665 * 111.26324 * 16.87496 * 15 14 13 27 27 O 1.21284 * 125.07382 * 179.14015 * 26 15 14 28 28 N 1.35535 * 125.56502 * 179.97438 * 2 1 3 29 29 H 0.97002 * 125.67376 * 0.05539 * 28 2 1 30 30 H 1.08999 * 109.46820 * 270.03576 * 1 2 3 31 31 H 1.09000 * 109.47219 * 30.03511 * 1 2 3 32 32 H 1.09005 * 109.46951 * 150.03796 * 1 2 3 33 33 H 1.08005 * 126.06351 * 359.97438 * 3 2 1 34 34 H 1.08002 * 126.45880 * 180.30140 * 4 3 2 35 35 H 1.09001 * 110.36504 * 322.87275 * 9 8 6 36 36 H 1.08996 * 110.36454 * 85.07258 * 9 8 6 37 37 H 1.09000 * 110.98770 * 81.49825 * 10 9 8 38 38 H 1.09008 * 110.98583 * 205.26393 * 10 9 8 39 39 H 1.09004 * 110.76023 * 276.57949 * 11 10 9 40 40 H 1.08997 * 110.76014 * 153.19461 * 11 10 9 41 41 H 1.09001 * 111.21915 * 145.64900 * 13 12 8 42 42 H 1.09000 * 110.85847 * 21.75804 * 13 12 8 43 43 H 1.09002 * 110.24387 * 216.00708 * 14 13 12 44 44 H 1.08993 * 110.23976 * 94.01199 * 14 13 12 45 45 H 1.08996 * 109.47368 * 30.02739 * 16 15 14 46 46 H 1.09001 * 109.47227 * 150.02550 * 16 15 14 47 47 H 1.09002 * 109.47141 * 299.99907 * 17 16 15 48 48 H 1.09001 * 109.47008 * 59.99871 * 17 16 15 49 49 H 0.97003 * 119.99747 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 0.0068 5 6 3.6122 -0.7019 0.0012 6 6 4.7860 -1.5815 0.0019 7 8 5.9007 -1.1088 -0.1202 8 7 4.6300 -2.9133 0.1380 9 6 3.3569 -3.6110 0.4073 10 6 3.7700 -4.9498 1.0697 11 6 5.0711 -5.2954 0.2948 12 6 5.6928 -3.9133 0.0445 13 6 6.8057 -3.6348 1.0727 14 6 7.8289 -2.8532 0.2164 15 7 7.5830 -3.2729 -1.1692 16 6 8.5243 -3.0719 -2.2736 17 6 8.2496 -1.7216 -2.9385 18 6 9.2174 -1.5150 -4.0750 19 1 9.9550 -2.2710 -4.3003 20 6 9.1619 -0.3604 -4.8265 21 7 8.2641 0.5605 -4.5518 22 14 10.3621 -0.1041 -6.2348 23 1 9.7803 -0.6514 -7.4867 24 1 10.6239 1.3479 -6.4040 25 1 11.6361 -0.8049 -5.9332 26 6 6.3807 -3.8664 -1.2936 27 8 5.9187 -4.2945 -2.3301 28 7 2.2953 -1.1025 0.0005 29 1 1.9833 -2.0210 0.0001 30 1 -0.3633 0.0006 1.0277 31 1 -0.3634 0.8897 -0.5144 32 1 -0.3633 -0.8904 -0.5133 33 1 1.9545 2.1269 -0.0004 34 1 4.5025 1.3091 0.0131 35 1 2.7401 -3.0252 1.0888 36 1 2.8214 -3.7960 -0.5238 37 1 3.9728 -4.8137 2.1320 38 1 3.0079 -5.7136 0.9146 39 1 4.8392 -5.7914 -0.6478 40 1 5.7318 -5.9116 0.9045 41 1 7.2377 -4.5627 1.4476 42 1 6.4321 -3.0208 1.8922 43 1 8.8452 -3.1117 0.5139 44 1 7.6661 -1.7805 0.3200 45 1 9.5441 -3.0868 -1.8892 46 1 8.4005 -3.8694 -3.0063 47 1 7.2297 -1.7067 -3.3230 48 1 8.3733 -0.9240 -2.2058 49 1 8.2248 1.3727 -5.0808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272324152.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:10 Heat of formation + Delta-G solvation = -4.255250 kcal Electronic energy + Delta-G solvation = -31907.717525 eV Core-core repulsion = 27835.997702 eV Total energy + Delta-G solvation = -4071.719823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71556 -40.83511 -38.35870 -37.21290 -35.82574 -33.58619 -32.46386 -31.65818 -31.55280 -30.94774 -29.05772 -27.82305 -26.88280 -25.10089 -24.20258 -22.90806 -22.02462 -21.64774 -20.83977 -20.04162 -19.73456 -18.74001 -17.54835 -16.59693 -16.30199 -15.92119 -15.90860 -15.32879 -14.93619 -14.75516 -14.48155 -14.22243 -14.20860 -13.71703 -13.53560 -13.42908 -13.22746 -13.10880 -12.93400 -12.69698 -12.60777 -12.52394 -12.42143 -12.19801 -12.05775 -11.86848 -11.66306 -11.48823 -11.25481 -11.06726 -10.86889 -10.77268 -10.57647 -9.92847 -9.89235 -9.62348 -9.60497 -9.07950 -8.99862 -8.55404 -8.24163 -8.05677 -7.80164 -5.88055 -3.92233 1.48617 2.44498 2.69115 3.01342 3.37596 3.39211 3.44103 3.46315 3.47551 3.68043 4.12561 4.19344 4.47203 4.55176 4.57747 4.69594 4.74632 4.80687 4.93500 4.95676 5.06880 5.20615 5.25351 5.33882 5.35495 5.43234 5.46646 5.52407 5.54426 5.58175 5.60948 5.80868 5.87652 5.90599 6.09393 6.15212 6.15736 6.31478 6.45366 6.57620 6.76348 6.93405 6.97808 7.13691 7.29287 7.41359 7.68431 7.82852 8.03074 8.14970 8.26812 8.47198 8.74806 9.15264 9.70582 11.22816 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.003936 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.158708 B = 7111.692427 C = 9108.709239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.040 3.960 3 C -0.207 4.207 4 C -0.098 4.098 5 C -0.046 4.046 6 C 0.599 3.401 7 O -0.490 6.490 8 N -0.602 5.602 9 C 0.088 3.912 10 C -0.125 4.125 11 C -0.114 4.114 12 C 0.135 3.865 13 C -0.133 4.133 14 C 0.096 3.904 15 N -0.590 5.590 16 C 0.129 3.871 17 C 0.017 3.983 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.888 5.888 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.511 3.489 27 O -0.532 6.532 28 N -0.543 5.543 29 H 0.413 0.587 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.017 0.983 48 H 0.022 0.978 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.163 -8.245 18.585 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.231 4.231 4 C -0.124 4.124 5 C -0.158 4.158 6 C 0.389 3.611 7 O -0.362 6.362 8 N -0.339 5.339 9 C -0.036 4.036 10 C -0.163 4.163 11 C -0.152 4.152 12 C 0.046 3.954 13 C -0.172 4.172 14 C -0.027 4.027 15 N -0.322 5.322 16 C 0.009 3.991 17 C -0.020 4.020 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.294 3.706 27 O -0.409 6.409 28 N -0.144 5.144 29 H 0.254 0.746 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.035 0.965 48 H 0.040 0.960 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.744 -8.077 17.824 25.116 hybrid contribution 0.434 -0.041 -0.929 1.026 sum -15.311 -8.117 16.895 24.202 Atomic orbital electron populations 1.20387 0.87806 1.03577 1.02742 1.20549 0.93599 0.86530 1.06989 1.20682 0.92375 0.97923 1.12128 1.21367 0.97884 0.91705 1.01439 1.20227 0.82463 0.94470 1.18667 1.16819 0.88013 0.79541 0.76724 1.90887 1.23666 1.73744 1.47931 1.48093 1.08317 1.04628 1.72851 1.22594 0.86979 0.94103 0.99891 1.22775 0.97838 0.95749 0.99939 1.22575 0.96790 0.93801 1.02072 1.21113 0.89157 0.89672 0.95485 1.22942 0.95409 1.01407 0.97449 1.22337 0.97916 1.01889 0.80552 1.48440 1.18085 1.55726 1.09907 1.21810 0.89818 1.01355 0.86137 1.19331 0.97390 0.90238 0.95085 1.21110 1.16756 1.03464 1.14872 0.92655 1.25003 0.95709 0.96032 0.97489 1.70013 1.34413 1.08386 1.39876 0.86595 0.81443 0.77197 0.82740 1.20703 1.21223 1.19865 1.20414 0.82144 0.78445 0.89555 1.90670 1.68331 1.49749 1.32175 1.42532 1.05594 1.08629 1.57658 0.74551 0.90784 0.89756 0.91708 0.83993 0.83206 0.90574 0.90941 0.90038 0.89267 0.89108 0.89131 0.89542 0.89392 0.91397 0.88067 0.91693 0.91433 0.96455 0.95978 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.41 36.00 0.37 -0.19 16 2 C 0.04 0.43 7.13 -81.95 -0.58 -0.15 16 3 C -0.21 -2.56 10.71 -39.98 -0.43 -2.99 16 4 C -0.10 -1.50 10.66 -39.12 -0.42 -1.91 16 5 C -0.05 -0.71 6.83 -81.98 -0.56 -1.27 16 6 C 0.60 10.40 7.41 -12.85 -0.10 10.30 16 7 O -0.49 -10.31 12.87 5.20 0.07 -10.24 16 8 N -0.60 -8.59 2.86 -158.81 -0.45 -9.04 16 9 C 0.09 0.82 5.27 -2.37 -0.01 0.81 16 10 C -0.12 -0.89 7.09 -24.45 -0.17 -1.06 16 11 C -0.11 -1.18 6.06 -25.18 -0.15 -1.33 16 12 C 0.13 1.96 0.85 -132.33 -0.11 1.84 16 13 C -0.13 -1.68 5.96 -25.32 -0.15 -1.83 16 14 C 0.10 1.60 6.39 -2.99 -0.02 1.58 16 15 N -0.59 -12.18 2.80 -172.50 -0.48 -12.67 16 16 C 0.13 3.03 5.88 -4.04 -0.02 3.00 16 17 C 0.02 0.51 5.30 -27.89 -0.15 0.36 16 18 C -0.52 -15.86 9.11 -34.44 -0.31 -16.17 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -28.62 13.29 55.43 0.74 -27.89 16 22 Si 0.89 22.79 29.54 -169.99 -5.02 17.76 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.51 10.40 6.55 -11.12 -0.07 10.33 16 27 O -0.53 -12.82 17.07 5.55 0.09 -12.73 16 28 N -0.54 -6.21 5.37 -5.70 -0.03 -6.24 16 29 H 0.41 3.62 5.36 -40.82 -0.22 3.40 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 34 H 0.15 2.38 8.06 -52.49 -0.42 1.95 16 35 H 0.08 0.55 6.23 -51.93 -0.32 0.23 16 36 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.09 1.09 7.51 -51.93 -0.39 0.70 16 40 H 0.09 0.73 7.40 -51.93 -0.38 0.35 16 41 H 0.09 0.84 7.46 -51.93 -0.39 0.45 16 42 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.10 1.95 5.63 -51.93 -0.29 1.66 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.07 1.63 7.94 -51.93 -0.41 1.22 16 47 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -39.87 391.07 -9.61 -49.48 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.43 Total: 2.65 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.99 Total: 3.01 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.23 Total: -55.83 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.16 Total: -22.97 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.87 -9.61 -49.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272324152.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.225 kcal (2) G-P(sol) polarization free energy of solvation -39.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds