Wall clock time and date at job start Wed Apr 1 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38678 * 120.41675 * 2 1 4 4 C 1.38627 * 118.41930 * 180.24221 * 3 2 1 5 5 C 1.38232 * 119.16085 * 359.75178 * 4 3 2 6 6 C 1.50702 * 119.61830 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47164 * 95.01929 * 6 5 4 8 8 C 1.47592 * 110.99892 * 266.11023 * 7 6 5 9 9 C 1.52892 * 87.78621 * 221.75948 * 8 7 6 10 10 C 1.47594 * 111.00261 * 170.00032 * 7 6 5 11 11 C 1.52448 * 114.27055 * 271.58561 * 9 8 7 12 12 N 1.46289 * 109.56406 * 272.35168 * 11 9 8 13 13 C 1.46498 * 118.72966 * 164.04065 * 12 11 9 14 14 C 1.53004 * 109.47482 * 89.99784 * 13 12 11 15 15 C 1.50696 * 109.47345 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00265 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99937 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00170 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47250 * 59.99512 * 19 17 15 21 21 H 1.48498 * 109.47043 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46983 * 299.99763 * 19 17 15 23 23 C 1.33717 * 122.54607 * 344.01598 * 12 11 9 24 24 O 1.21284 * 118.36242 * 183.34693 * 23 12 11 25 25 C 1.50159 * 123.27722 * 3.36933 * 23 12 11 26 26 O 1.42563 * 114.25766 * 139.69306 * 9 8 7 27 27 N 1.31857 * 120.76541 * 359.97438 * 5 4 3 28 28 C 1.31889 * 121.72235 * 0.02562 * 27 5 4 29 29 H 1.09007 * 109.47201 * 270.25231 * 1 2 3 30 30 H 1.09001 * 109.47428 * 30.24997 * 1 2 3 31 31 H 1.08996 * 109.47062 * 150.25696 * 1 2 3 32 32 H 1.07994 * 120.78944 * 359.96926 * 3 2 1 33 33 H 1.07997 * 120.42083 * 179.72800 * 4 3 2 34 34 H 1.09002 * 109.47085 * 215.02006 * 6 5 4 35 35 H 1.09000 * 109.46752 * 335.01898 * 6 5 4 36 36 H 1.09001 * 113.50163 * 336.48734 * 8 7 6 37 37 H 1.09003 * 113.49867 * 107.03651 * 8 7 6 38 38 H 1.08996 * 113.50401 * 252.97103 * 10 7 6 39 39 H 1.09008 * 113.49412 * 23.51208 * 10 7 6 40 40 H 1.09005 * 109.45682 * 32.37103 * 11 9 8 41 41 H 1.08999 * 109.46144 * 152.32342 * 11 9 8 42 42 H 1.09005 * 109.47494 * 209.99951 * 13 12 11 43 43 H 1.09004 * 109.47332 * 329.99771 * 13 12 11 44 44 H 1.08999 * 109.46538 * 300.00339 * 14 13 12 45 45 H 1.09000 * 109.46446 * 59.99976 * 14 13 12 46 46 H 0.96998 * 120.00201 * 180.02562 * 18 17 15 47 47 H 1.09006 * 109.34249 * 102.48137 * 25 23 12 48 48 H 1.08999 * 109.34675 * 222.02328 * 25 23 12 49 49 H 1.08002 * 119.61237 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0052 5 6 4.2256 -0.0823 -0.0049 6 6 5.7312 -0.1468 -0.0110 7 7 6.2210 -0.2855 1.3669 8 6 6.5445 1.0319 1.9484 9 6 7.7958 0.3925 2.5509 10 6 7.6651 -0.5900 1.3869 11 6 7.5809 -0.2315 3.9252 12 7 7.7834 0.7821 4.9604 13 6 7.2926 0.5135 6.3144 14 6 8.3885 -0.1804 7.1259 15 6 7.8834 -0.4572 8.5184 16 1 6.8812 -0.1669 8.7971 17 6 8.7012 -1.0802 9.4372 18 7 9.9218 -1.4334 9.0981 19 14 8.0754 -1.4227 11.1636 20 1 6.8810 -2.3022 11.0918 21 1 9.1390 -2.0963 11.9511 22 1 7.7084 -0.1423 11.8202 23 6 8.3995 1.9440 4.7189 24 8 8.5813 2.7036 5.6468 25 6 8.8771 2.3556 3.3561 26 8 8.9586 1.2155 2.4958 27 7 3.5255 -1.1996 0.0008 28 6 2.2066 -1.1916 0.0058 29 1 -0.3634 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5098 32 1 1.6889 2.1423 -0.0005 33 1 4.1734 2.0593 -0.0097 34 1 6.0557 -1.0046 -0.6001 35 1 6.1322 0.7673 -0.4489 36 1 6.7631 1.7949 1.2013 37 1 5.8245 1.3659 2.6955 38 1 7.8882 -1.6210 1.6612 39 1 8.1893 -0.2694 0.4865 40 1 6.5651 -0.6209 3.9923 41 1 8.2917 -1.0451 4.0698 42 1 7.0235 1.4534 6.7965 43 1 6.4157 -0.1318 6.2617 44 1 8.6575 -1.1202 6.6438 45 1 9.2653 0.4650 7.1785 46 1 10.4970 -1.8720 9.7443 47 1 8.1802 3.0789 2.9325 48 1 9.8622 2.8142 3.4419 49 1 1.6672 -2.1273 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273231083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:06 Heat of formation + Delta-G solvation = 3.982080 kcal Electronic energy + Delta-G solvation = -30146.026284 eV Core-core repulsion = 26074.663659 eV Total energy + Delta-G solvation = -4071.362626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57999 -40.50227 -39.27901 -36.89937 -35.40367 -34.30924 -33.02938 -32.58193 -30.91953 -30.00152 -28.45396 -27.22669 -26.38377 -25.91824 -24.51832 -24.08239 -23.38985 -21.72646 -21.40105 -20.07472 -18.16175 -17.86557 -16.99955 -16.95147 -16.51384 -16.23699 -15.90371 -15.70725 -15.52114 -15.11042 -14.75487 -14.64806 -14.43116 -14.05802 -13.93732 -13.70948 -13.47275 -13.23318 -13.09152 -12.97432 -12.85333 -12.68240 -12.54982 -12.37236 -12.25756 -11.87273 -11.57426 -11.41348 -11.28149 -10.94085 -10.83309 -10.66796 -10.24464 -10.07592 -9.86090 -9.80785 -9.70146 -9.38535 -9.31277 -9.06344 -8.98396 -8.32022 -8.08636 -5.97298 -4.00474 0.74873 0.98748 2.89077 3.05698 3.34325 3.36287 3.40255 3.43461 3.48543 3.80122 3.91523 4.13079 4.27467 4.39746 4.45703 4.49327 4.55876 4.64541 4.66360 4.77822 4.85438 4.97338 5.01805 5.12247 5.15091 5.17034 5.28073 5.31056 5.38526 5.39286 5.44377 5.51212 5.53073 5.59356 5.62615 5.69626 5.86371 5.90188 5.95003 6.11047 6.38200 6.52477 6.55008 6.68290 6.84816 6.91370 7.62676 7.73903 7.74483 7.95531 8.02878 8.37971 8.52749 9.05717 9.62953 11.14183 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.002477 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.690782 B =11299.550896 C =12668.889591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.142 4.142 3 C -0.077 4.077 4 C -0.161 4.161 5 C 0.136 3.864 6 C 0.071 3.929 7 N -0.451 5.451 8 C -0.026 4.026 9 C 0.070 3.930 10 C 0.024 3.976 11 C 0.119 3.881 12 N -0.596 5.596 13 C 0.114 3.886 14 C 0.015 3.985 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.478 3.522 24 O -0.539 6.539 25 C 0.053 3.947 26 O -0.355 6.355 27 N -0.463 5.463 28 C 0.101 3.899 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.015 0.985 45 H 0.022 0.978 46 H 0.261 0.739 47 H 0.083 0.917 48 H 0.128 0.872 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.159 4.350 -25.896 29.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 C -0.103 4.103 4 C -0.181 4.181 5 C -0.002 4.002 6 C -0.058 4.058 7 N -0.175 5.175 8 C -0.155 4.155 9 C 0.029 3.971 10 C -0.104 4.104 11 C -0.004 4.004 12 N -0.328 5.328 13 C -0.006 4.006 14 C -0.023 4.023 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.265 3.735 24 O -0.417 6.417 25 C -0.026 4.026 26 O -0.272 6.272 27 N -0.172 5.172 28 C -0.056 4.056 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.034 0.966 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.146 0.854 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.781 3.365 -25.173 28.895 hybrid contribution -0.402 1.168 0.631 1.387 sum -14.182 4.533 -24.542 28.705 Atomic orbital electron populations 1.20723 0.90205 1.03045 1.02763 1.20961 0.97645 0.94325 1.01457 1.21457 0.93936 0.98229 0.96640 1.21945 0.95252 0.98893 1.02000 1.20882 0.95658 0.88392 0.95315 1.21536 0.89928 1.02696 0.91613 1.68959 1.14720 1.17836 1.15962 1.24611 0.97587 0.93067 1.00236 1.22815 0.85766 0.92968 0.95574 1.23867 0.88912 1.00808 0.96852 1.21582 1.03646 0.91432 0.83758 1.47703 1.56866 1.16258 1.12010 1.21957 0.98387 1.01005 0.79245 1.19343 0.93769 0.95270 0.93907 1.21045 0.99727 1.38734 0.96432 0.92613 1.25000 0.94847 0.95682 0.98770 1.69968 1.07216 1.40858 1.35167 0.86616 0.78363 0.78481 0.84291 1.20206 1.21279 1.20182 1.20622 0.79098 0.82305 0.91504 1.90763 1.55674 1.51257 1.44033 1.22758 1.04513 0.88720 0.86595 1.88061 1.38523 1.36953 1.63682 1.67465 1.08008 1.30945 1.10749 1.22681 0.89714 0.97505 0.95722 0.90760 0.91408 0.91132 0.84928 0.85141 0.88589 0.91726 0.89994 0.88946 0.87661 0.89473 0.88656 0.90030 0.90710 0.91700 0.96625 0.95927 0.92918 0.89931 0.85442 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.04 36.00 0.36 -0.18 16 2 C -0.14 -1.09 5.90 -104.48 -0.62 -1.71 16 3 C -0.08 -0.58 9.86 -39.28 -0.39 -0.97 16 4 C -0.16 -1.34 9.72 -39.44 -0.38 -1.72 16 5 C 0.14 1.35 6.37 -82.58 -0.53 0.82 16 6 C 0.07 0.60 5.12 -4.98 -0.03 0.58 16 7 N -0.45 -4.53 6.15 -246.10 -1.51 -6.05 16 8 C -0.03 -0.26 6.54 -7.27 -0.05 -0.31 16 9 C 0.07 0.82 1.29 -91.02 -0.12 0.71 16 10 C 0.02 0.23 7.12 -7.27 -0.05 0.18 16 11 C 0.12 1.76 5.85 -4.44 -0.03 1.74 16 12 N -0.60 -11.03 2.84 -174.72 -0.50 -11.52 16 13 C 0.11 2.50 5.20 -4.04 -0.02 2.48 16 14 C 0.01 0.41 5.29 -27.88 -0.15 0.26 16 15 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 19 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.48 8.89 7.57 -11.72 -0.09 8.80 16 24 O -0.54 -12.35 16.33 5.55 0.09 -12.26 16 25 C 0.05 0.71 6.70 35.74 0.24 0.95 16 26 O -0.35 -4.60 10.68 -35.23 -0.38 -4.98 16 27 N -0.46 -5.18 10.27 -9.47 -0.10 -5.28 16 28 C 0.10 0.92 10.86 -17.55 -0.19 0.73 16 29 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 31 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.06 0.43 7.20 -51.93 -0.37 0.05 16 36 H 0.08 0.67 7.42 -51.93 -0.39 0.28 16 37 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 38 H 0.11 0.97 8.11 -51.93 -0.42 0.55 16 39 H 0.09 0.69 7.91 -51.92 -0.41 0.28 16 40 H 0.10 1.35 7.83 -51.93 -0.41 0.94 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.73 7.29 -51.93 -0.38 1.36 16 43 H 0.06 1.30 7.97 -51.93 -0.41 0.89 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 47 H 0.08 0.88 7.99 -51.93 -0.41 0.47 16 48 H 0.13 1.57 8.14 -51.93 -0.42 1.14 16 49 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -36.17 403.45 -10.84 -47.02 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.81 Total: -1.79 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.44 Total: -1.48 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -1.37 Total: -49.74 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.29 Total: -17.24 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.17 -10.84 -47.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273231083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.002 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds